Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 1.4e-174 617.1 581 100.0
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 1.0e-161 574.3 579 96.2
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 7.8e-149 531.6 580 88.8
MELO3C026387.2 Cucumis melo HOM05D006642 ORTHO05D008856 9.9e-120 434.9 558 89.6
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 2.1e-109 400.6 334 78.1
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 7.3e-107 392.1 334 82.0
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.8e-105 387.5 334 82.3
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.8e-105 387.5 334 82.6
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 2.4e-105 387.1 334 82.6
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 2.4e-105 387.1 334 77.2
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 5.3e-105 386.0 334 82.6
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 9.0e-105 385.2 592 76.4
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 9.3e-102 375.2 335 75.2
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 1.1e-99 368.2 334 74.3
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 7.4e-99 365.5 336 73.8
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 7.4e-99 365.5 336 73.8
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 3.7e-98 363.2 334 72.5
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 4.8e-98 362.8 334 73.4
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 6.2e-98 362.5 334 72.8
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 2.4e-97 360.5 334 72.5
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 5.8e-96 355.9 335 72.2
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 7.6e-96 355.5 315 74.9
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 9.9e-96 355.1 337 72.1
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 2.2e-95 354.0 337 70.9
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 2.9e-95 353.6 337 70.9
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 2.5e-94 350.5 308 76.6
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 2.5e-94 350.5 317 79.2
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 3.2e-94 350.1 331 71.0
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 4.2e-94 349.7 334 71.3
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 1.6e-93 347.8 318 73.3
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 1.6e-93 347.8 303 76.2
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 2.1e-93 347.4 316 79.4
BcaC07g40235 Brassica carinata HOM05D006642 ORTHO05D008856 2.7e-93 347.1 335 77.6
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 2.7e-93 347.1 334 70.1
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 2.7e-93 347.1 315 73.7
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 2.7e-93 347.1 314 74.2
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 3.5e-93 346.7 337 70.9
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 3.5e-93 346.7 336 70.8
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 6.0e-93 345.9 337 70.0
A09p51470 Brassica napus HOM05D006642 ORTHO05D008856 3.9e-92 343.2 335 77.0
Thhalv10005856m.g Eutrema salsugineum HOM05D006642 ORTHO05D008856 3.9e-92 343.2 335 70.7
C08p34230 Brassica napus HOM05D006642 ORTHO05D008856 5.1e-92 342.8 335 77.0
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 5.1e-92 342.8 321 72.6
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 6.7e-92 342.4 321 72.6
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 8.7e-92 342.0 305 75.4
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 8.7e-92 342.0 311 74.3
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 1.1e-91 341.7 321 72.0
Sp5g03940 Schrenkiella parvula HOM05D006642 ORTHO05D008856 1.1e-91 341.7 335 70.4
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 1.9e-91 340.9 305 75.7
Carub.0005s2580 Capsella rubella HOM05D006642 ORTHO05D008856 2.5e-91 340.5 335 69.9
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 2.5e-91 340.5 305 75.1
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 9.6e-91 338.6 305 74.8
CARHR169450 Cardamine hirsuta HOM05D006642 ORTHO05D008856 4.8e-90 336.3 335 69.3
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 6.2e-90 335.9 334 68.3
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 1.8e-89 334.3 308 73.4
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 2.4e-89 334.0 334 68.6
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 6.9e-89 332.4 306 73.5
BraA09t40583Z Brassica rapa HOM05D006642 ORTHO05D008856 9.0e-89 332.0 335 75.5
AT3G59040 Arabidopsis thaliana HOM05D006642 ORTHO05D008856 1.2e-88 331.6 335 68.4
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 2.0e-88 330.9 318 69.5
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 4.5e-88 329.7 297 74.7
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 7.6e-88 328.9 320 70.3
THA.LOC104802288 Tarenaya hassleriana HOM05D006642 ORTHO05D008856 7.6e-88 328.9 344 69.2
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 1.0e-87 328.6 303 73.6
Duzib147G0394 Durio zibethinus HOM05D006642 ORTHO05D008856 1.7e-87 327.8 296 68.9
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 1.7e-87 327.8 315 65.4
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 1.7e-87 327.8 304 73.0
Aa31LG10G13530 Aethionema arabicum HOM05D006642 ORTHO05D008856 2.9e-87 327.0 335 67.8
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 4.9e-87 326.2 334 66.8
BolC8t51020H Brassica oleracea HOM05D006642 ORTHO05D008856 6.5e-87 325.9 308 80.5
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 6.5e-87 325.9 331 68.0
QL02p091883 Quercus lobata HOM05D006642 ORTHO05D008856 6.5e-87 325.9 570 77.7
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 1.4e-86 324.7 307 71.3
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 2.5e-86 323.9 342 66.1
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 4.2e-86 323.2 312 72.8
Thecc.01G164600 Theobroma cacao HOM05D006642 ORTHO05D008856 4.2e-86 323.2 295 74.2
COL.COLO4_29911 Corchorus olitorius HOM05D006642 ORTHO05D008856 5.5e-86 322.8 295 73.9
HPP92_011054 Vanilla planifolia HOM05D006642 ORTHO05D008856 5.5e-86 322.8 311 69.5
Gohir.A05G380400 Gossypium hirsutum HOM05D006642 ORTHO05D008856 2.1e-85 320.9 295 75.6
Gorai.012G039700 Gossypium raimondii HOM05D006642 ORTHO05D008856 4.6e-85 319.7 295 74.9
Gohir.D04G035200 Gossypium hirsutum HOM05D006642 ORTHO05D008856 7.9e-85 318.9 295 74.9
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 2.3e-84 317.4 303 71.3
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 2.3e-84 317.4 307 79.2
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 3.0e-84 317.0 337 51.9
BcaC07g40308 Brassica carinata HOM05D006642 ORTHO05D008856 1.1e-83 315.1 293 82.9
Zm00001eb413390 Zea mays HOM05D006642 ORTHO05D008856 1.1e-83 315.1 306 69.3
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 3.3e-83 313.5 301 72.1
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 1.3e-82 311.6 292 74.0
Hund08483 Selenicereus undatus HOM05D006642 ORTHO05D008856 1.6e-82 311.2 335 66.6
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 6.3e-82 309.3 303 69.6
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 7.7e-80 302.4 298 54.4
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 7.7e-80 302.4 560 63.9
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 1.7e-79 301.2 298 70.5
QL93p2017_0027 Quercus lobata HOM05D006642 ORTHO05D008856 2.5e-78 297.4 526 80.4
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 1.0e-76 292.0 331 64.7
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 3.8e-71 273.5 291 66.0
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 1.9e-70 271.2 315 56.2
Lj1A585G41 Lonicera japonica HOM05D006642 ORTHO05D008856 6.7e-68 262.7 183 71.6
Nn4g26620 Nelumbo nucifera HOM05D006642 ORTHO05D008856 2.3e-60 237.7 136 83.1
EL10Ac5g11659 Beta vulgaris HOM05D006642 ORTHO05D008856 2.5e-54 217.6 162 66.7
HPP92_011074 Vanilla planifolia HOM05D006642 ORTHO05D008856 4.2e-54 216.9 155 65.2
Haze_13626 Corylus avellana HOM05D006642 ORTHO05D008856 3.7e-50 203.8 446 78.7
FAN09G4833 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.5e-46 191.8 123 77.2
AL5G40920 Arabidopsis lyrata HOM05D006642 ORTHO05D008856 2.9e-39 167.5 196 73.0
Pp3c26_11100 Physcomitrium patens HOM05D006642 ORTHO05D008856 3.9e-31 140.6 262 49.2
BcaC08g44955 Brassica carinata HOM05D006642 ORTHO05D008856 2.0e-27 128.3 82 76.8
CiPaw.03G197600 Carya illinoinensis HOM05D006642 ORTHO05D008856 3.7e-26 124.0 315 79.0
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 7.0e-25 119.8 265 34.0
Mapoly0047s0104 Marchantia polymorpha HOM05D006642 ORTHO05D008856 2.7e-24 117.9 261 46.0
EL10Ac5g11660 Beta vulgaris HOM05D006642 ORTHO05D008856 1.3e-23 115.5 104 57.7
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 3.0e-23 114.4 78 73.1
SMO259G0047 Selaginella moellendorffii HOM05D006642 ORTHO05D008856 1.8e-20 105.1 266 41.7
BcaB02g07488 Brassica carinata HOM05D006642 ORTHO05D008856 1.0e-15 89.4 63 69.8
BolC6t37747H Brassica oleracea HOM05D006642 ORTHO05D032904 6.6e-15 86.7 62 67.7
Lj5g0013792 Lotus japonicus HOM05D006642 ORTHO05D008856 3.7e-10 70.9 48 70.8
BcaC08g44954 Brassica carinata HOM05D006642 ORTHO05D032904 2.7e-08 64.7 45 71.1


User provided reference genes

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