Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 0.0e+00 1283.1 709 100.0
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 1.2e-289 999.6 743 77.8
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 1.2e-289 999.6 711 80.0
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 2.2e-275 952.2 714 76.8
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 4.7e-265 917.9 712 74.7
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 2.9e-198 696.0 715 54.5
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 3.4e-191 672.5 709 59.5
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 1.1e-189 667.5 718 58.2
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 1.4e-189 667.2 716 59.4
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 4.8e-185 652.1 714 58.3
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 9.1e-184 647.9 714 56.3
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 6.5e-182 641.7 729 57.5
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 5.5e-181 638.6 718 57.4
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.1e-180 636.7 728 56.6
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 2.1e-180 636.7 717 56.5
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 2.1e-180 636.7 715 55.7
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 1.4e-179 634.0 713 56.9
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 8.8e-179 631.3 727 54.5
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.6e-178 629.8 723 56.3
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 1.3e-177 627.5 727 54.9
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 2.2e-177 626.7 721 57.0
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 4.8e-177 625.5 716 56.0
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.4e-176 624.0 708 56.1
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 7.0e-176 621.7 708 56.4
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.6e-175 619.8 708 55.8
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 3.5e-175 619.4 708 55.8
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 1.7e-174 617.1 716 55.0
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 2.9e-174 616.3 723 55.0
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.5e-173 613.2 725 55.7
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.2e-173 612.5 708 55.6
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 9.4e-173 611.3 746 54.6
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.6e-172 610.5 708 55.5
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 2.7e-172 609.8 719 54.5
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 6.1e-172 608.6 725 55.6
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 8.0e-172 608.2 785 45.0
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 1.0e-171 607.8 721 55.5
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 3.0e-171 606.3 709 55.4
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 3.9e-171 605.9 722 54.4
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 3.9e-171 605.9 716 56.0
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 1.7e-169 600.5 723 53.5
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.7e-169 600.5 774 48.6
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.2e-169 600.1 720 47.6
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 8.2e-169 598.2 714 54.8
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 3.1e-168 596.3 722 52.8
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 9.1e-168 594.7 723 54.1
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 1.6e-167 594.0 712 53.8
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 1.6e-167 594.0 716 54.5
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 2.0e-167 593.6 719 53.8
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 3.5e-167 592.8 714 54.1
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 8.5e-166 588.2 722 52.9
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 1.1e-165 587.8 721 53.7
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 6.1e-164 582.0 722 53.3
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 4.4e-162 575.9 722 52.2
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 3.7e-161 572.8 714 52.7
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 4.8e-161 572.4 721 47.9
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 1.4e-160 570.9 723 52.8
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 3.5e-159 566.2 714 53.6
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 4.5e-159 565.8 714 53.6
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 8.5e-158 561.6 685 54.7
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 2.5e-157 560.1 712 53.8
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 5.5e-157 558.9 747 50.9
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 2.1e-156 557.0 712 53.2
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 1.8e-155 553.9 720 52.2
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 2.3e-155 553.5 719 47.4
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 8.8e-155 551.6 715 52.7
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 1.5e-154 550.8 713 53.2
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 7.5e-154 548.5 719 49.9
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 9.8e-154 548.1 710 52.1
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 6.3e-153 545.4 720 51.2
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 8.3e-153 545.0 709 52.2
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 7.0e-152 542.0 716 51.3
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 1.2e-151 541.2 757 50.2
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 2.0e-151 540.4 712 51.1
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 2.7e-151 540.0 646 56.7
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 4.5e-151 539.3 713 51.2
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.3e-150 537.7 713 51.3
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 2.5e-149 533.5 714 50.8
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 2.5e-149 533.5 713 50.9
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 7.2e-149 531.9 714 50.7
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 9.5e-149 531.6 714 50.8
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 6.1e-148 528.9 718 51.5
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 8.0e-148 528.5 714 52.0
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 1.4e-147 527.7 713 50.4
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 1.4e-147 527.7 719 50.8
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 3.0e-147 526.6 652 56.3
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 3.4e-146 523.1 713 49.9
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 9.8e-146 521.5 719 46.3
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 2.8e-145 520.0 719 49.5
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 2.8e-145 520.0 715 50.6
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 6.3e-145 518.8 709 51.5
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 3.6e-140 503.1 714 50.4
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 3.6e-140 503.1 709 50.8
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 4.7e-140 502.7 644 54.0
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.8e-139 500.7 730 48.2
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 2.2e-137 493.8 729 48.4
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 7.0e-136 488.8 719 47.0
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 5.8e-130 469.2 538 48.9
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.7e-129 467.6 725 41.2
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 1.7e-129 467.6 712 49.3
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 9.2e-128 461.8 724 47.8
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 1.0e-126 458.4 650 51.2
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 8.1e-124 448.7 723 38.9
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 1.3e-121 441.4 719 47.7
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 2.1e-119 434.1 574 53.3
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 2.7e-119 433.7 712 37.8
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 2.3e-118 430.6 722 37.8
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.3e-117 426.4 542 45.6
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.6e-116 424.5 738 40.5
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 6.8e-115 419.1 723 36.8
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 2.6e-114 417.2 519 55.9
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 4.4e-114 416.4 722 38.4
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.7e-110 404.4 656 48.6
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.1e-109 401.7 740 38.5
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 9.9e-106 388.7 472 58.5
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.5e-103 380.2 521 54.5
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 9.6e-101 372.1 518 52.9
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 8.7e-94 349.0 542 41.3
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.9e-88 331.3 550 40.0
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 9.6e-85 318.9 460 46.5
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 3.2e-80 303.9 732 39.9
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 6.1e-79 299.7 372 46.5
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.3e-73 282.0 330 47.6
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 5.1e-70 270.0 422 50.7
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.8e-70 269.2 476 38.9
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.0e-69 268.1 438 40.2
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.9e-65 254.2 492 37.2
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 1.4e-59 235.3 262 62.2
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 5.0e-57 226.9 253 69.2
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 5.2e-54 216.9 266 46.2
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 3.7e-52 210.7 727 31.4
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 7.7e-50 203.0 299 41.8
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 1.8e-43 181.8 198 51.5
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 2.1e-39 168.3 223 44.4
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 4.0e-38 164.1 123 64.2
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 1.2e-37 162.5 568 26.8
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 2.0e-34 151.8 121 59.5
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.3e-33 148.3 164 50.0
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 1.2e-31 142.5 527 26.4
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 2.3e-30 138.3 121 56.2
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.5e-29 135.6 123 54.5
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 4.9e-28 130.6 132 56.1
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 7.0e-27 126.7 125 56.0
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 1.2e-26 125.9 147 44.9
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.0e-26 125.2 124 50.0
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 2.7e-26 124.8 231 34.6
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 4.3e-24 117.5 151 43.7
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 1.2e-23 115.9 123 47.2
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 2.1e-23 115.2 109 53.2
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.7e-23 114.0 113 49.6
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.2e-22 110.5 108 50.9
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 8.9e-22 109.8 156 42.3
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.5e-21 109.0 113 48.7
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.5e-21 109.0 113 48.7
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 2.9e-20 104.8 107 50.5
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 4.9e-20 104.0 89 61.8
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.9e-19 102.1 113 46.9
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.9e-19 102.1 113 46.0
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.0e-18 98.6 113 46.0
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.0e-17 94.7 113 46.0
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.6e-17 93.6 97 55.7
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 8.6e-17 93.2 273 30.0
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 7.3e-16 90.1 126 44.4
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 2.1e-15 88.6 72 58.3
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.2e-15 87.0 93 54.8
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 8.9e-14 83.2 110 48.2
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 1.2e-13 82.8 285 28.4
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.6e-13 81.6 54 63.0
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.8e-13 80.5 58 65.5
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.8e-13 79.7 58 63.8
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 9.8e-13 79.7 76 52.6
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.2e-12 78.6 58 63.8
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 3.7e-12 77.8 260 26.9
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.1e-11 76.3 58 62.1
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 1.4e-11 75.9 122 34.4
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.9e-11 75.5 58 62.1
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.9e-11 75.5 58 62.1
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 1.2e-07 62.8 63 46.0
CAN.G475.12 Capsicum annuum HOM05D003682 ORTHO05D004224 2.1e-07 62.0 54 53.7
MELO3C003519.2 Cucumis melo HOM05D003682 ORTHO05D004224 3.6e-07 61.2 108 38.9


User provided reference genes

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