Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 5.3e-66 254.6 169 100.0
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 4.0e-53 211.8 132 98.5
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 7.5e-52 207.6 132 97.0
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 1.7e-48 196.4 132 87.1
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 4.7e-46 188.3 132 87.1
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 6.1e-46 188.0 132 81.8
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 6.1e-46 188.0 132 84.1
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 1.4e-45 186.8 132 80.3
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 8.8e-45 184.1 132 87.9
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 1.2e-44 183.7 132 84.1
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 1.5e-44 183.3 132 80.3
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 3.4e-44 182.2 106 84.9
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 4.4e-44 181.8 132 85.6
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 4.4e-44 181.8 132 86.4
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 4.4e-44 181.8 132 86.4
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 7.5e-44 181.0 132 86.4
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 9.8e-44 180.6 132 79.5
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.3e-43 180.3 132 80.3
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.3e-43 180.3 132 80.3
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 1.7e-43 179.9 132 84.8
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 2.2e-43 179.5 132 78.0
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 2.2e-43 179.5 132 87.1
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 2.8e-43 179.1 132 86.4
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 2.8e-43 179.1 132 82.6
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 2.8e-43 179.1 132 84.1
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 3.7e-43 178.7 132 79.5
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 4.8e-43 178.3 132 77.3
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 6.3e-43 177.9 132 84.8
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 6.3e-43 177.9 134 79.9
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 8.3e-43 177.6 132 84.8
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 1.4e-42 176.8 132 78.8
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 1.4e-42 176.8 132 78.8
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 1.8e-42 176.4 132 77.3
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 2.4e-42 176.0 132 84.1
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 3.1e-42 175.6 132 77.3
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 4.1e-42 175.3 106 75.5
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 4.1e-42 175.3 132 76.5
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 4.1e-42 175.3 106 78.3
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 4.1e-42 175.3 132 78.8
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 5.4e-42 174.9 132 81.8
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 5.4e-42 174.9 132 83.3
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 5.4e-42 174.9 132 84.8
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 7.0e-42 174.5 132 83.3
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 9.1e-42 174.1 132 81.1
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 1.6e-41 173.3 132 84.8
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 1.6e-41 173.3 132 75.8
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 2.7e-41 172.6 132 75.0
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 3.5e-41 172.2 136 80.9
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 3.5e-41 172.2 137 78.1
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 4.5e-41 171.8 132 78.0
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 5.9e-41 171.4 132 75.8
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 7.7e-41 171.0 132 83.3
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 7.7e-41 171.0 133 77.4
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 1.3e-40 170.2 132 83.3
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 1.7e-40 169.9 132 82.6
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 1.7e-40 169.9 131 84.0
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 1.7e-40 169.9 132 75.0
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 2.3e-40 169.5 132 82.6
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 2.3e-40 169.5 132 73.5
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 2.9e-40 169.1 106 79.2
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 3.8e-40 168.7 134 82.1
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 3.8e-40 168.7 132 75.8
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 3.8e-40 168.7 132 75.8
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 5.0e-40 168.3 132 75.8
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.5e-39 166.8 132 80.3
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.9e-39 166.4 132 74.2
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 1.9e-39 166.4 133 75.9
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 2.5e-39 166.0 132 74.2
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 3.3e-39 165.6 169 59.8
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 3.3e-39 165.6 135 82.2
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 3.3e-39 165.6 134 79.9
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 4.2e-39 165.2 132 83.3
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 7.2e-39 164.5 132 81.8
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 9.5e-39 164.1 127 81.9
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 9.5e-39 164.1 133 75.2
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.2e-38 163.7 134 76.1
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 1.2e-38 163.7 133 73.7
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 3.6e-38 162.2 130 82.3
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 3.6e-38 162.2 134 75.4
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 1.4e-37 160.2 135 78.5
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 1.8e-37 159.8 126 81.7
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 4.0e-37 158.7 132 79.5
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 4.0e-37 158.7 127 73.2
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 6.8e-37 157.9 127 72.4
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.5e-36 156.8 132 78.8
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 4.4e-36 155.2 134 70.1
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 7.5e-36 154.5 134 70.1
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 9.8e-36 154.1 134 69.4
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 9.8e-36 154.1 134 69.4
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 9.8e-36 154.1 128 75.0
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 9.8e-36 154.1 110 70.0
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 2.2e-35 152.9 134 69.4
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 2.8e-35 152.5 131 76.3
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 4.9e-35 151.8 134 71.6
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 8.3e-35 151.0 132 76.5
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 1.7e-32 143.3 133 67.7
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 1.7e-32 143.3 133 67.7
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 1.7e-32 143.3 133 67.7
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 2.5e-31 139.4 133 66.2
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 2.5e-31 139.4 105 82.9
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 1.6e-30 136.7 135 71.1
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 1.6e-30 136.7 120 68.3
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 2.1e-30 136.3 135 65.2
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 4.7e-30 135.2 109 75.2
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 1.0e-29 134.0 134 66.4
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 1.0e-29 134.0 103 82.5
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 2.3e-29 132.9 108 58.3
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.6e-28 129.4 132 62.1
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 2.2e-27 126.3 103 89.3
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 8.3e-27 124.4 109 71.6
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 1.1e-26 124.0 103 88.3
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 1.1e-26 124.0 110 69.1
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 1.6e-25 120.2 109 70.6
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 3.0e-24 115.9 112 64.3
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 6.6e-24 114.8 103 72.8
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 9.5e-23 110.9 112 59.8
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 5.8e-20 101.7 96 74.0
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 2.9e-19 99.4 118 56.8
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 6.4e-19 98.2 112 60.7
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 1.9e-18 96.7 116 58.6
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 4.1e-18 95.5 109 58.7
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 1.6e-17 93.6 84 79.8
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 2.3e-16 89.7 84 66.7
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 3.0e-16 89.4 94 74.5
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 8.6e-16 87.8 78 82.1
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 4.3e-15 85.5 78 78.2
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 7.3e-15 84.7 58 84.5
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 1.2e-14 84.0 56 87.5
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 6.2e-14 81.6 56 85.7
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 1.8e-13 80.1 76 44.7
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 2.2e-11 73.2 84 69.0
arahy.Tifrunner.gnm1.ann1.MYP07C Arachis hypogaea HOM05D005383 ORTHO05D006722 4.7e-06 55.5 60 65.0


User provided reference genes

Program Settings