Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G017790 Citrullus lanatus HOM05D001283 ORTHO05D001109 4.2e-58 228.0 116 100.0
CsaV3_7G005550 Cucumis sativus L. HOM05D001283 ORTHO05D001109 6.3e-30 134.4 197 47.2
CsaV3_3G038510 Cucumis sativus L. HOM05D001283 ORTHO05D001109 8.2e-30 134.0 198 47.0
Ciclev10012758m.g Citrus clementina HOM05D001283 ORTHO05D001109 4.1e-29 131.7 193 48.7
Manes.09G040200 Manihot esculenta HOM05D001283 ORTHO05D001109 5.0e-27 124.8 191 46.6
COL.COLO4_29433 Corchorus olitorius HOM05D001283 ORTHO05D001109 2.5e-26 122.5 185 48.1
Nitab4.5_0000827g0060 Nicotiana tabacum HOM05D000764 ORTHO05D002006 6.7e-24 114.4 120 62.5
MELO3C009595.2 Cucumis melo HOM05D001283 ORTHO05D001109 9.7e-23 110.5 197 42.1
Gohir.A04G054300 Gossypium hirsutum HOM05D001283 ORTHO05D001109 1.4e-21 106.7 188 45.2
Haze_22963 Corylus avellana HOM05D000020 ORTHO05D000904 2.0e-20 102.8 137 56.9
Cc00_g26120 Coffea canephora HOM05D001283 ORTHO05D001109 7.7e-20 100.9 179 43.0
Thecc.05G180100 Theobroma cacao HOM05D001283 ORTHO05D001109 1.0e-19 100.5 197 42.6
Gorai.009G393200 Gossypium raimondii HOM05D001283 ORTHO05D001109 1.3e-19 100.1 177 44.6
TAR633G1703 Trochodendron aralioides HOM05D001283 ORTHO05D001109 1.7e-19 99.8 198 41.4
Potri.006G197000 Populus trichocarpa HOM05D001283 ORTHO05D001109 5.0e-19 98.2 195 42.1
vmacro22126 Vaccinium macrocarpon HOM05D001283 ORTHO05D001109 8.5e-19 97.4 118 59.3
DCAR_023815 Daucus carota HOM05D001283 ORTHO05D001109 1.4e-18 96.7 144 52.1
CANSAT64G1377 Cannabis sativa HOM05D001283 ORTHO05D001109 7.2e-18 94.4 187 42.8
Hund24826 Selenicereus undatus HOM05D001283 ORTHO05D001109 1.2e-17 93.6 191 39.8
Ca_25941_v3 Cicer arietinum L. HOM05D001283 ORTHO05D001109 1.6e-17 93.2 225 40.0
CiPaw.14G135100 Carya illinoinensis HOM05D001283 ORTHO05D001109 2.7e-17 92.4 206 39.8
Duzib168G0268 Durio zibethinus HOM05D001283 ORTHO05D001109 3.6e-17 92.0 181 45.9
MELO3C015085.2 Cucumis melo HOM05D001283 ORTHO05D001109 4.7e-17 91.7 166 48.2
RcHm_v2.0_Chr3g0478671 Rosa chinensis HOM05D001283 ORTHO05D001109 4.7e-17 91.7 173 42.8
Medtr1g054675 Medicago truncatula HOM05D001283 ORTHO05D001109 1.8e-16 89.7 197 39.6
Prupe.7G085400 Prunus persica HOM05D001283 ORTHO05D001109 6.7e-16 87.8 190 39.5
Lj1A1135T85 Lonicera japonica HOM05D001283 ORTHO05D001109 8.8e-16 87.4 182 40.7
Gohir.D04G094100 Gossypium hirsutum HOM05D001283 ORTHO05D001109 2.0e-15 86.3 180 41.1
arahy.Tifrunner.gnm1.ann1.60QTDI Arachis hypogaea HOM05D001283 ORTHO05D001109 4.4e-15 85.1 194 40.7
arahy.Tifrunner.gnm1.ann1.AVS37Q Arachis hypogaea HOM05D001283 ORTHO05D001109 4.4e-15 85.1 194 40.7
Potri.016G062500 Populus trichocarpa HOM05D001283 ORTHO05D001109 4.4e-15 85.1 50 88.0
EL10Ac3g06849 Beta vulgaris HOM05D001283 ORTHO05D001109 5.7e-15 84.7 101 56.4
Thhalv10021351m.g Eutrema salsugineum HOM05D001283 ORTHO05D001109 1.7e-14 83.2 202 39.1
Sabra06G0151500 Salix brachista HOM05D001283 ORTHO05D001109 2.8e-14 82.4 169 39.6
Sp1g40970 Schrenkiella parvula HOM05D001283 ORTHO05D001109 2.8e-14 82.4 209 40.2
Carub.0003s1305 Capsella rubella HOM05D001283 ORTHO05D001109 3.7e-14 82.0 202 39.1
Gohir.A06G103300 Gossypium hirsutum HOM05D001283 ORTHO05D001109 6.3e-14 81.3 203 36.9
Gohir.D06G111000 Gossypium hirsutum HOM05D001283 ORTHO05D001109 1.1e-13 80.5 203 36.9
Gorai.010G126300 Gossypium raimondii HOM05D001283 ORTHO05D001109 1.1e-13 80.5 203 36.9
Oeu035959.1 Olea europaea HOM05D001283 ORTHO05D001109 1.1e-13 80.5 194 37.1
Sp3g11780 Schrenkiella parvula HOM05D001283 ORTHO05D001109 1.1e-13 80.5 196 39.3
AT3G13570 Arabidopsis thaliana HOM05D001283 ORTHO05D001109 1.4e-13 80.1 202 38.6
Duzib093G1381 Durio zibethinus HOM05D001283 ORTHO05D001109 1.4e-13 80.1 50 86.0
Rhsim04G0093600 Rhododendron simsii HOM05D001283 ORTHO05D001109 2.4e-13 79.3 51 86.3
Carub.0001s4381 Capsella rubella HOM05D001283 ORTHO05D001109 3.1e-13 79.0 50 86.0
Hma1.2p1_0241F.1_g100610 Hydrangea macrophylla HOM05D001283 ORTHO05D001109 3.1e-13 79.0 213 38.5
MSTRG.20944 Avicennia marina HOM05D001283 ORTHO05D001109 4.1e-13 78.6 195 39.0
Thecc.09G208600 Theobroma cacao HOM05D001283 ORTHO05D001109 4.1e-13 78.6 206 39.3
TWI53G1669 Tripterygium wilfordii HOM05D001283 ORTHO05D001109 4.1e-13 78.6 50 84.0
FvH4_6g21490 Fragaria vesca HOM05D001283 ORTHO05D001109 5.3e-13 78.2 166 39.8
Nn7g37184 Nelumbo nucifera HOM05D007667 ORTHO05D001109 5.3e-13 78.2 50 84.0
Oeu058888.2 Olea europaea HOM05D001283 ORTHO05D001109 5.3e-13 78.2 232 35.3
PGR119G0664 Punica granatum HOM05D001283 ORTHO05D001109 5.3e-13 78.2 191 37.2
Sabra01G0004800 Salix brachista HOM05D000020 ORTHO05D000904 5.3e-13 78.2 50 86.0
CANSAT11G2380 Cannabis sativa HOM05D001283 ORTHO05D001109 7.0e-13 77.8 201 36.8
Potri.003G218600 Populus trichocarpa HOM05D001283 ORTHO05D001109 7.0e-13 77.8 50 86.0
QL01p008467 Quercus lobata HOM05D001283 ORTHO05D001109 1.2e-12 77.0 50 86.0
AL3G23580 Arabidopsis lyrata HOM05D001283 ORTHO05D001109 1.6e-12 76.6 48 85.4
Migut.D02546 Erythranthe guttata HOM05D001283 ORTHO05D001109 1.6e-12 76.6 195 36.4
Thhalv10011714m.g Eutrema salsugineum HOM05D001283 ORTHO05D001109 1.6e-12 76.6 50 84.0
FAN02G3873 Fragaria x ananassa HOM05D001283 ORTHO05D001109 1.6e-12 76.6 166 39.2
AL3G25480 Arabidopsis lyrata HOM05D001283 ORTHO05D001109 2.0e-12 76.3 220 35.9
PGSC0003DMG400004273 Solanum tuberosum HOM05D001283 ORTHO05D001109 2.0e-12 76.3 202 36.1
CSS0026311 Camellia sinensis var. sinensis HOM05D001283 ORTHO05D001109 2.6e-12 75.9 50 84.0
Carub.0003s1131 Capsella rubella HOM05D001283 ORTHO05D001109 2.6e-12 75.9 48 85.4
Cc01_g02150 Coffea canephora HOM05D001283 ORTHO05D001109 2.6e-12 75.9 204 37.3
Sabra03G0163000 Salix brachista HOM05D001283 ORTHO05D001109 2.6e-12 75.9 50 84.0
arahy.Tifrunner.gnm1.ann1.HMW6IE Arachis hypogaea HOM05D001283 ORTHO05D001109 3.5e-12 75.5 50 82.0
Eucgr.J01817 Eucalyptus grandis HOM05D001283 ORTHO05D001109 3.5e-12 75.5 214 36.0
Peaxi162Scf00463g00214 Petunia axillaris HOM05D001283 ORTHO05D001109 3.5e-12 75.5 203 36.5
Cpa.g.sc119.64 Carica papaya HOM05D001283 ORTHO05D001109 5.9e-12 74.7 51 82.4
CiPaw.10G023800 Carya illinoinensis HOM05D001283 ORTHO05D001109 5.9e-12 74.7 167 37.7
Os03g0374575 Oryza sativa ssp. japonica HOM05D001283 ORTHO05D001109 5.9e-12 74.7 48 81.2
C01p51540 Brassica napus HOM05D001283 ORTHO05D001109 1.0e-11 73.9 195 37.9
FvH4_3g45331 Fragaria vesca HOM05D001283 ORTHO05D001109 1.0e-11 73.9 52 80.8
FAN25G2643 Fragaria x ananassa HOM05D000020 ORTHO05D000904 1.0e-11 73.9 52 80.8
MD14G1050500 Malus domestica HOM05D001283 ORTHO05D001109 1.0e-11 73.9 57 73.7
PGR004G0332 Punica granatum HOM05D001283 ORTHO05D001109 1.0e-11 73.9 199 36.2
AL1G63350 Arabidopsis lyrata HOM05D001283 ORTHO05D001109 1.7e-11 73.2 196 37.8
arahy.Tifrunner.gnm1.ann1.F6WF27 Arachis hypogaea HOM05D001283 ORTHO05D001109 1.7e-11 73.2 50 80.0
Duzib150G0274 Durio zibethinus HOM05D001283 ORTHO05D001109 1.7e-11 73.2 50 82.0
Sabra16G0064400 Salix brachista HOM05D001283 ORTHO05D001109 1.7e-11 73.2 175 37.7
CARHR088250 Cardamine hirsuta HOM05D001283 ORTHO05D001109 2.2e-11 72.8 52 78.8
Cpa.g.sc85.26 Carica papaya HOM05D001283 ORTHO05D001109 2.2e-11 72.8 60 70.0
CsaV3_1G043660 Cucumis sativus L. HOM05D001283 ORTHO05D001109 2.2e-11 72.8 50 82.0
Eucgr.A02506 Eucalyptus grandis HOM05D001283 ORTHO05D001109 2.2e-11 72.8 50 78.0
Zm00001eb328450 Zea mays HOM05D001283 ORTHO05D001109 2.2e-11 72.8 185 39.5
Lj1C542G3 Lonicera japonica HOM05D001283 ORTHO05D001109 2.9e-11 72.4 220 33.2
Actinidia39355 Actinidia chinensis HOM05D001283 ORTHO05D001109 3.8e-11 72.0 208 36.5
RcHm_v2.0_Chr5g0083131 Rosa chinensis HOM05D001283 ORTHO05D001109 3.8e-11 72.0 52 80.8
Zm00001eb394060 Zea mays HOM05D001283 ORTHO05D001109 3.8e-11 72.0 50 78.0
FAN21G0550 Fragaria x ananassa HOM05D000020 ORTHO05D000904 5.0e-11 71.6 52 78.8
Gohir.A09G130200 Gossypium hirsutum HOM05D001283 ORTHO05D001109 5.0e-11 71.6 169 36.1
Nitab4.5_0001730g0110 Nicotiana tabacum HOM05D001283 ORTHO05D001109 5.0e-11 71.6 193 37.3
Nitab4.5_0002532g0050 Nicotiana tabacum HOM05D001283 ORTHO05D001109 5.0e-11 71.6 50 78.0
ClCG03G012340 Citrullus lanatus HOM05D001283 ORTHO05D001109 6.5e-11 71.2 221 36.2
Dinv24032 Davidia involucrata HOM05D001283 ORTHO05D001109 6.5e-11 71.2 51 78.4
Dinv13450 Davidia involucrata HOM05D001283 ORTHO05D001109 8.5e-11 70.9 217 37.8
PSO384G1488 Papaver somniferum HOM05D001283 ORTHO05D001109 8.5e-11 70.9 200 39.0
Sc13g0002520 Simmondsia chinensis HOM05D001283 ORTHO05D001109 8.5e-11 70.9 49 75.5
Aa31sc238G20 Aethionema arabicum HOM05D001283 ORTHO05D001109 1.1e-10 70.5 48 79.2
BcaC08g44189 Brassica carinata HOM05D001283 ORTHO05D001109 1.1e-10 70.5 210 39.5
A01p40060 Brassica napus HOM05D001283 ORTHO05D001109 1.1e-10 70.5 197 37.1
BolC6t36788H Brassica oleracea HOM05D001283 ORTHO05D001109 1.1e-10 70.5 210 39.5
TPR.G14494 Trifolium pratense HOM05D001283 ORTHO05D001109 1.1e-10 70.5 193 37.3
C06p15960 Brassica napus HOM05D001283 ORTHO05D001109 1.5e-10 70.1 210 39.5
CARHR086530 Cardamine hirsuta HOM05D001283 ORTHO05D001109 1.5e-10 70.1 89 55.1
COL.COLO4_35028 Corchorus olitorius HOM05D000020 ORTHO05D000904 1.5e-10 70.1 189 36.5
A06p00270 Brassica napus HOM05D001283 ORTHO05D001109 1.9e-10 69.7 53 81.1
BolC1t05097H Brassica oleracea HOM05D001283 ORTHO05D001109 1.9e-10 69.7 206 35.9
PSO339G0614 Papaver somniferum HOM05D001283 ORTHO05D001109 1.9e-10 69.7 200 38.5
THA.LOC104799276 Tarenaya hassleriana HOM05D001283 ORTHO05D001109 1.9e-10 69.7 48 79.2
Aa31LG10G1070 Aethionema arabicum HOM05D001283 ORTHO05D001109 2.5e-10 69.3 235 34.0
BraA06t23244Z Brassica rapa HOM05D001283 ORTHO05D001109 2.5e-10 69.3 53 81.1
ECA248G1698 Erigeron canadensis HOM05D001283 ORTHO05D001109 2.5e-10 69.3 67 64.2
HPP92_015936 Vanilla planifolia HOM05D001283 ORTHO05D001109 2.5e-10 69.3 50 80.0
Eucgr.J01814 Eucalyptus grandis HOM05D001283 ORTHO05D001109 3.2e-10 68.9 50 78.0
Peaxi162Scf00349g00096 Petunia axillaris HOM05D001283 ORTHO05D001109 3.2e-10 68.9 123 51.2
DCAR_019868 Daucus carota HOM05D000525 ORTHO05D007127 4.2e-10 68.6 52 78.8
TWI60G1426 Tripterygium wilfordii HOM05D001283 ORTHO05D001109 4.2e-10 68.6 193 35.8
BcaB04g20989 Brassica carinata HOM05D001283 ORTHO05D001109 5.5e-10 68.2 195 36.4
Lsat_1_v5_gn_1_58760 Lactuca sativa HOM05D001283 ORTHO05D001109 5.5e-10 68.2 49 75.5
Lsat_1_v5_gn_6_54241 Lactuca sativa HOM05D001283 ORTHO05D001109 7.2e-10 67.8 243 32.9
MD03G1005800 Malus domestica HOM05D001283 ORTHO05D001109 7.2e-10 67.8 54 77.8
Hma1.2p1_0116F.1_g056240 Hydrangea macrophylla HOM05D001283 ORTHO05D001109 9.4e-10 67.4 73 54.8
Os07g0633200 Oryza sativa ssp. japonica HOM05D001283 ORTHO05D001109 9.4e-10 67.4 49 79.6
BraA01t04047Z Brassica rapa HOM05D001283 ORTHO05D001109 1.6e-09 66.6 207 35.3
Glyma.14G188200 Glycine max HOM05D001283 ORTHO05D001109 2.7e-09 65.9 218 35.8
BolC6t37849H Brassica oleracea HOM05D001283 ORTHO05D001109 3.6e-09 65.5 53 75.5
SGA_v2.0_scaffold6G03285 Striga asiatica HOM05D001283 ORTHO05D001109 4.7e-09 65.1 49 77.6
THA.LOC104815664 Tarenaya hassleriana HOM05D001283 ORTHO05D001109 4.7e-09 65.1 106 49.1
AUR62032735 Chenopodium quinoa HOM05D001283 ORTHO05D001109 6.1e-09 64.7 52 69.2
Nn2g12627 Nelumbo nucifera HOM05D001283 ORTHO05D001109 6.1e-09 64.7 202 35.6
QL07p025482 Quercus lobata HOM05D001283 ORTHO05D001109 6.1e-09 64.7 181 35.9
Sp3g10200 Schrenkiella parvula HOM05D001283 ORTHO05D001109 6.1e-09 64.7 155 39.4
C08p11220 Brassica napus HOM05D001283 ORTHO05D001109 8.0e-09 64.3 48 75.0
Haze_20071 Corylus avellana HOM05D001283 ORTHO05D001109 8.0e-09 64.3 50 74.0
BraA05t22537Z Brassica rapa HOM05D001283 ORTHO05D001109 1.0e-08 63.9 48 79.2
Thhalv10021457m.g Eutrema salsugineum HOM05D001283 ORTHO05D001109 1.0e-08 63.9 165 38.2
Glyma.02G220800 Glycine max HOM05D001283 ORTHO05D001109 1.0e-08 63.9 54 74.1
FAN11G1880 Fragaria x ananassa HOM05D000020 ORTHO05D000904 1.4e-08 63.5 45 80.0
SGA_v2.0_scaffold6G03419 Striga asiatica HOM05D001283 ORTHO05D001109 1.4e-08 63.5 49 75.5
BraA05t20649Z Brassica rapa HOM05D001283 ORTHO05D001109 2.3e-08 62.8 54 75.9
C05p55940 Brassica napus HOM05D001283 ORTHO05D001109 4.0e-08 62.0 48 77.1
BolC5t34261H Brassica oleracea HOM05D001283 ORTHO05D001109 4.0e-08 62.0 48 77.1
Potri.001G006400 Populus trichocarpa HOM05D001283 ORTHO05D001109 4.0e-08 62.0 50 74.0
Aa31LG8G770 Aethionema arabicum HOM05D001283 ORTHO05D001109 5.2e-08 61.6 51 74.5
C03p92610 Brassica napus HOM05D001283 ORTHO05D001109 5.2e-08 61.6 57 66.7
Eucgr.L01219 Eucalyptus grandis HOM05D001283 ORTHO05D001109 5.2e-08 61.6 140 39.3
HanXRQChr11g0344731 Helianthus annuus HOM05D001283 ORTHO05D001109 6.7e-08 61.2 52 71.2
MSTRG.10855 Avicennia marina HOM05D001283 ORTHO05D001109 8.8e-08 60.8 96 49.0
Glyma.09G104200 Glycine max HOM05D001283 ORTHO05D001109 8.8e-08 60.8 52 73.1
Phvul.001G268900 Phaseolus vulgaris HOM05D001283 ORTHO05D001109 1.2e-07 60.5 54 74.1
VMungo1383G1868 Vigna mungo HOM05D001283 ORTHO05D001109 1.2e-07 60.5 54 74.1
AUR62015293 Chenopodium quinoa HOM05D001283 ORTHO05D001109 1.5e-07 60.1 53 67.9
Solyc01g005820.4 Solanum lycopersicum HOM05D001283 ORTHO05D001109 1.5e-07 60.1 47 72.3
Sopen01g001820 Solanum pennellii HOM05D001283 ORTHO05D001109 1.5e-07 60.1 47 72.3
Prupe.6G005600 Prunus persica HOM05D001283 ORTHO05D001109 2.0e-07 59.7 51 74.5
Migut.N00566 Erythranthe guttata HOM05D001283 ORTHO05D001109 2.6e-07 59.3 50 72.0
Lalb_Chr02g0153871 Lupinus albus HOM05D001283 ORTHO05D001109 2.6e-07 59.3 67 59.7
Nitab4.5_0000658g0110 Nicotiana tabacum HOM05D001283 ORTHO05D001109 2.6e-07 59.3 44 75.0
GSVIVG01025432001 Vitis vinifera HOM05D001283 ORTHO05D001109 2.6e-07 59.3 53 67.9
ECA233G1134 Erigeron canadensis HOM05D007640 ORTHO05D009514 3.3e-07 58.9 244 31.1
SEGI_36663 Sequoiadendron giganteum HOM05D001283 ORTHO05D001109 3.3e-07 58.9 50 66.0
Ca_16379_v3 Cicer arietinum L. HOM05D001283 ORTHO05D001109 4.4e-07 58.5 55 67.3
Oeu033919.1 Olea europaea HOM05D001283 ORTHO05D001109 4.4e-07 58.5 80 50.0
Migut.J01877 Erythranthe guttata HOM05D001283 ORTHO05D001109 7.5e-07 57.8 181 38.1
BolC6t36101H Brassica oleracea HOM05D001283 ORTHO05D001109 1.3e-06 57.0 56 66.1
Manes.15G107000 Manihot esculenta HOM05D001283 ORTHO05D001109 1.3e-06 57.0 199 34.7
Medtr3g083550 Medicago truncatula HOM05D001283 ORTHO05D001109 1.3e-06 57.0 55 67.3
MD11G1008700 Malus domestica HOM05D001283 ORTHO05D001109 1.7e-06 56.6 57 70.2
Phvul.007G262600 Phaseolus vulgaris HOM05D001283 ORTHO05D001109 1.7e-06 56.6 83 49.4
Eucgr.A02501 Eucalyptus grandis HOM05D001283 ORTHO05D001109 2.2e-06 56.2 42 73.8
A05p17550 Brassica napus HOM05D001283 ORTHO05D001109 2.8e-06 55.8 209 36.4
THA.LOC104822676 Tarenaya hassleriana HOM05D001283 ORTHO05D001109 2.8e-06 55.8 50 68.0
C06p10260 Brassica napus HOM05D001283 ORTHO05D001109 4.8e-06 55.1 56 64.3
PGSC0003DMG400032132 Solanum tuberosum HOM05D001283 ORTHO05D001109 4.8e-06 55.1 47 68.1
TWI32G1002 Tripterygium wilfordii HOM05D001283 ORTHO05D001109 6.3e-06 54.7 51 66.7


User provided reference genes

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