Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G016640 Citrullus lanatus HOM05D005933 ORTHO05D007366 1.3e-296 1022.3 519 100.0
CsaV3_3G039700 Cucumis sativus L. HOM05D005933 ORTHO05D007366 2.9e-232 808.5 519 82.7
MELO3C009712.2 Cucumis melo HOM05D005933 ORTHO05D007366 3.8e-232 808.1 519 83.0
Sed0001053 Sechium edule HOM05D005933 ORTHO05D007366 1.1e-207 726.9 523 75.9
Haze_19854 Corylus avellana HOM05D005933 ORTHO05D007366 8.4e-155 551.2 503 59.6
CiPaw.08G166600 Carya illinoinensis HOM05D005933 ORTHO05D007366 6.1e-153 545.0 519 58.0
Ciclev10004945m.g Citrus clementina HOM05D005933 ORTHO05D007366 1.6e-150 537.0 520 57.1
TWI74G0083 Tripterygium wilfordii HOM05D005933 ORTHO05D007366 7.7e-148 528.1 520 56.9
FAN05G5216 Fragaria x ananassa HOM05D005933 ORTHO05D007366 1.9e-146 523.5 519 56.1
FAN02G2268 Fragaria x ananassa HOM05D005933 ORTHO05D007366 2.5e-146 523.1 519 55.1
Phvul.001G132100 Phaseolus vulgaris HOM05D005933 ORTHO05D007366 4.2e-146 522.3 520 55.0
QL07p000555 Quercus lobata HOM05D005933 ORTHO05D007366 4.2e-146 522.3 519 56.5
Ca_08457_v3 Cicer arietinum L. HOM05D005933 ORTHO05D007366 1.2e-145 520.8 520 55.4
Eucgr.A02347 Eucalyptus grandis HOM05D005933 ORTHO05D007366 1.2e-145 520.8 519 55.9
Medtr7g091500 Medicago truncatula HOM05D005933 ORTHO05D007366 3.6e-145 519.2 520 55.8
QL07p000522 Quercus lobata HOM05D005933 ORTHO05D007366 7.9e-145 518.1 519 55.9
RcHm_v2.0_Chr3g0482381 Rosa chinensis HOM05D005933 ORTHO05D007366 7.9e-145 518.1 519 54.7
PGR004G0721 Punica granatum HOM05D005933 ORTHO05D007366 1.8e-144 516.9 523 55.8
FvH4_6g23820 Fragaria vesca HOM05D005933 ORTHO05D007366 2.3e-144 516.5 519 55.1
Lj1g0013042 Lotus japonicus HOM05D005933 ORTHO05D007366 2.3e-144 516.5 520 55.0
CANSAT78G0457 Cannabis sativa HOM05D005933 ORTHO05D007366 3.0e-144 516.2 522 55.0
Glyma.03G136900 Glycine max HOM05D005933 ORTHO05D007366 3.9e-144 515.8 520 54.8
GSVIVG01033275001 Vitis vinifera HOM05D005933 ORTHO05D007366 2.0e-143 513.5 519 54.9
Thecc.05G153300 Theobroma cacao HOM05D005933 ORTHO05D007366 6.3e-142 508.4 519 53.4
arahy.Tifrunner.gnm1.ann1.EHL0AN Arachis hypogaea HOM05D005933 ORTHO05D007366 1.4e-141 507.3 519 52.6
Duzib093G2041 Durio zibethinus HOM05D005933 ORTHO05D007366 1.8e-141 506.9 520 52.9
VMungo1383G3081 Vigna mungo HOM05D005933 ORTHO05D007366 1.8e-141 506.9 582 50.5
arahy.Tifrunner.gnm1.ann1.T110QE Arachis hypogaea HOM05D005933 ORTHO05D007366 4.1e-141 505.8 519 52.4
Lalb_Chr25g0287121 Lupinus albus HOM05D005933 ORTHO05D007366 9.1e-141 504.6 515 54.6
Gohir.D11G173800 Gossypium hirsutum HOM05D005933 ORTHO05D007366 1.5e-140 503.8 519 54.7
MD12G1074000 Malus domestica HOM05D005933 ORTHO05D007366 1.5e-140 503.8 520 53.3
Gorai.007G186200 Gossypium raimondii HOM05D005933 ORTHO05D007366 2.6e-140 503.1 519 54.3
COL.COLO4_28284 Corchorus olitorius HOM05D005933 ORTHO05D007366 1.7e-139 500.4 514 52.9
Actinidia39225 Actinidia chinensis HOM05D005933 ORTHO05D007366 2.9e-139 499.6 524 52.9
FAN14G1069 Fragaria x ananassa HOM05D005933 ORTHO05D007366 3.8e-139 499.2 498 55.0
Gohir.A11G167500 Gossypium hirsutum HOM05D005933 ORTHO05D007366 2.5e-138 496.5 519 54.3
Psat3g072720 Pisum sativum HOM05D005933 ORTHO05D007366 2.5e-138 496.5 505 55.2
Sabra06G0036000 Salix brachista HOM05D005933 ORTHO05D007366 4.7e-137 492.3 514 53.1
PGSC0003DMG400023688 Solanum tuberosum HOM05D005933 ORTHO05D007366 1.8e-136 490.3 524 50.2
CARHR244310 Cardamine hirsuta HOM05D005933 ORTHO05D007366 3.0e-136 489.6 518 52.9
Manes.09G022000 Manihot esculenta HOM05D005933 ORTHO05D007366 3.9e-136 489.2 506 53.6
Potri.006G051300 Populus trichocarpa HOM05D005933 ORTHO05D007366 5.1e-136 488.8 520 51.9
Solyc10g080110.3 Solanum lycopersicum HOM05D005933 ORTHO05D007366 6.7e-136 488.4 524 50.6
Actinidia09329 Actinidia chinensis HOM05D005933 ORTHO05D007366 2.6e-135 486.5 524 51.9
Cc06_g17560 Coffea canephora HOM05D005933 ORTHO05D007366 4.4e-135 485.7 534 51.7
AL7G15130 Arabidopsis lyrata HOM05D005933 ORTHO05D007366 7.4e-135 485.0 516 52.5
CSS0022562 Camellia sinensis var. sinensis HOM05D005933 ORTHO05D007366 7.4e-135 485.0 518 52.1
Sopen10g030730 Solanum pennellii HOM05D005933 ORTHO05D007366 1.7e-134 483.8 524 50.4
AT4G35910 Arabidopsis thaliana HOM05D005933 ORTHO05D007366 2.8e-134 483.0 516 52.1
MSTRG.19860 Avicennia marina HOM05D005933 ORTHO05D007366 3.1e-133 479.6 524 51.5
DCAR_009061 Daucus carota HOM05D005933 ORTHO05D007366 5.3e-133 478.8 520 51.9
TPR.G854 Trifolium pratense HOM05D005933 ORTHO05D007366 2.6e-132 476.5 443 58.5
Carub.0007s0431 Capsella rubella HOM05D005933 ORTHO05D007366 3.5e-132 476.1 518 51.9
Cpa.g.sc92.52 Carica papaya HOM05D005933 ORTHO05D007366 7.7e-132 474.9 489 54.4
Hma1.2p1_2002F.1_g310760 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 7.7e-132 474.9 517 52.6
EL10Ac3g07091 Beta vulgaris HOM05D005933 ORTHO05D007366 8.5e-131 471.5 510 51.4
Peaxi162Scf00618g00022 Petunia axillaris HOM05D005933 ORTHO05D007366 1.5e-130 470.7 523 50.1
Rhsim03G0022400 Rhododendron simsii HOM05D005933 ORTHO05D007366 1.9e-130 470.3 512 51.4
Sp7g34530 Schrenkiella parvula HOM05D005933 ORTHO05D007366 5.5e-130 468.8 518 51.5
Lsat_1_v5_gn_8_81281 Lactuca sativa HOM05D005933 ORTHO05D007366 7.2e-130 468.4 520 51.0
Thhalv10025158m.g Eutrema salsugineum HOM05D005933 ORTHO05D007366 3.6e-129 466.1 516 50.4
Lju124A41G42 Lonicera japonica HOM05D005933 ORTHO05D007366 3.6e-129 466.1 484 52.5
vmacro07854 Vaccinium macrocarpon HOM05D005933 ORTHO05D007366 8.0e-129 464.9 554 48.7
Rhsim03G0021100 Rhododendron simsii HOM05D005933 ORTHO05D007366 1.0e-128 464.5 512 51.2
Aa31LG6G13690 Aethionema arabicum HOM05D005933 ORTHO05D007366 1.4e-128 464.2 516 50.4
AUR62026040 Chenopodium quinoa HOM05D005933 ORTHO05D007366 2.3e-128 463.4 507 50.3
A01p02040 Brassica napus HOM05D005933 ORTHO05D007366 2.0e-127 460.3 518 50.8
THA.LOC104811196 Tarenaya hassleriana HOM05D005933 ORTHO05D007366 4.4e-127 459.1 518 51.5
C01p02220 Brassica napus HOM05D005933 ORTHO05D007366 5.7e-127 458.8 518 50.6
Hund05286 Selenicereus undatus HOM05D005933 ORTHO05D007366 1.3e-126 457.6 451 55.2
Nitab4.5_0008648g0010 Nicotiana tabacum HOM05D005933 ORTHO05D007366 2.8e-126 456.4 523 48.8
BolC1t00214H Brassica oleracea HOM05D005933 ORTHO05D007366 3.7e-126 456.1 518 50.6
BraA01t00193Z Brassica rapa HOM05D005933 ORTHO05D007366 6.3e-126 455.3 518 50.4
Dinv39604 Davidia involucrata HOM05D005933 ORTHO05D007366 6.3e-126 455.3 437 57.0
Oeu017944.1 Olea europaea HOM05D005933 ORTHO05D007366 2.4e-125 453.4 514 50.2
Nitab4.5_0009442g0020 Nicotiana tabacum HOM05D005933 ORTHO05D007366 3.1e-125 453.0 527 49.5
BcaNung03520 Brassica carinata HOM05D005933 ORTHO05D007366 2.7e-124 449.9 519 50.7
SalBow6G0452 Salvia bowleyana HOM05D005933 ORTHO05D007366 3.5e-124 449.5 496 52.4
HanXRQChr09g0252561 Helianthus annuus HOM05D005933 ORTHO05D007366 8.5e-123 444.9 526 48.3
SGA_v2.0_scaffold69G23116 Striga asiatica HOM05D005933 ORTHO05D007366 2.5e-122 443.4 496 51.8
ECA236G1702 Erigeron canadensis HOM05D005933 ORTHO05D007366 4.2e-122 442.6 529 48.2
Aqoxy5G03564 Aquilegia oxysepala HOM05D005933 ORTHO05D007366 4.7e-121 439.1 521 47.2
Migut.J01758 Erythranthe guttata HOM05D005933 ORTHO05D007366 6.1e-121 438.7 527 49.1
Ah.13g075070 Amaranthus hybridus HOM05D005933 ORTHO05D007366 2.6e-119 433.3 493 49.3
Atru.chr1.1098 Acer truncatum HOM05D005933 ORTHO05D007366 1.4e-117 427.6 420 57.1
PSO782G3339 Papaver somniferum HOM05D005933 ORTHO05D007366 1.6e-116 424.1 525 46.9
Peaxi162Scf00354g00225 Petunia axillaris HOM05D005933 ORTHO05D007366 2.0e-116 423.7 492 49.6
Cfa008569 Carpinus fangiana HOM05D005933 ORTHO05D007366 5.9e-116 422.2 380 59.5
AUR62024451 Chenopodium quinoa HOM05D005933 ORTHO05D007366 6.5e-115 418.7 549 45.0
CAN.G128.8 Capsicum annuum HOM05D005933 ORTHO05D007366 3.2e-114 416.4 419 52.5
ATR0686G233 Amborella trichopoda HOM05D005933 ORTHO05D007366 4.5e-108 396.0 469 46.7
Hma1.2p1_2002F.1_g310770 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 5.0e-107 392.5 401 53.4
MBI16_g31719_MAGBIO Magnolia biondii HOM05D005933 ORTHO05D007366 3.6e-105 386.3 508 46.5
Prupe.7G060900 Prunus persica HOM05D005933 ORTHO05D007366 1.2e-100 371.3 370 54.6
Os12g0588900 Oryza sativa ssp. japonica HOM05D005933 ORTHO05D007366 2.5e-98 363.6 442 45.5
SEGI_18184 Sequoiadendron giganteum HOM05D005933 ORTHO05D007366 4.3e-98 362.8 486 42.6
unitig_749.g14146 Utricularia gibba HOM05D003650 ORTHO05D004213 5.2e-96 355.9 521 43.6
Oeu008914.1 Olea europaea HOM05D005933 ORTHO05D007366 4.6e-92 342.8 392 49.0
Oeu008916.1 Olea europaea HOM05D005933 ORTHO05D007366 4.6e-92 342.8 392 49.0
Sc13g0001740 Simmondsia chinensis HOM05D005933 ORTHO05D007366 2.8e-89 333.6 339 52.5
Zm00001eb135000 Zea mays HOM05D005933 ORTHO05D007366 2.2e-86 323.9 493 40.0
SHI32975 Sapria himalayana HOM05D005933 ORTHO05D000023 9.2e-85 318.5 379 48.3
CDE09G0169 Ceratophyllum demersum HOM05D005933 ORTHO05D007366 1.1e-77 295.0 305 52.5
HPP92_017763 Vanilla planifolia HOM05D005933 ORTHO05D007366 1.6e-68 264.6 398 39.7
Glyma.19G139200 Glycine max HOM05D005933 ORTHO05D007366 3.0e-67 260.4 278 53.2
TAR633G2718 Trochodendron aralioides HOM05D005933 ORTHO05D007366 1.5e-66 258.1 273 53.5
AagrBONN_evm.TU.Sc2ySwM_117.299 Anthoceros agrestis HOM05D005933 ORTHO05D007366 7.3e-66 255.8 499 36.9
Mapoly0165s0023 Marchantia polymorpha HOM05D005933 ORTHO05D007366 9.6e-66 255.4 502 32.7
BcaNung04276 Brassica carinata HOM05D005933 ORTHO05D007366 3.1e-64 250.4 493 38.5
SMO145G0218 Selaginella moellendorffii HOM05D005933 ORTHO05D007366 8.4e-54 215.7 388 34.8
Pp3c14_19420 Physcomitrium patens HOM05D005933 ORTHO05D007366 7.1e-53 212.6 342 38.3
Cfa017604 Carpinus fangiana HOM05D005933 ORTHO05D007366 2.3e-51 207.6 432 36.3
CDE02G1215 Ceratophyllum demersum HOM05D002948 ORTHO05D003577 1.1e-48 198.7 173 56.6
C07p62070 Brassica napus HOM05D005933 ORTHO05D007366 1.5e-47 194.9 165 61.2
BolC7t46624H Brassica oleracea HOM05D005933 ORTHO05D007366 1.5e-47 194.9 165 61.2
Cfa017749 Carpinus fangiana HOM05D005933 ORTHO05D007366 1.1e-45 188.7 234 45.7
Rhsim03G0020400 Rhododendron simsii HOM05D005933 ORTHO05D007366 4.6e-44 183.3 273 43.6
Atru.chr1.1100 Acer truncatum HOM05D005933 ORTHO05D007366 1.4e-37 161.8 183 54.1
Cc06_g12380 Coffea canephora HOM05D005933 ORTHO05D007366 7.4e-34 149.4 181 48.1
MD12G1074100 Malus domestica HOM05D005933 ORTHO05D007366 7.4e-34 149.4 167 50.3
CBR_g982 Chara braunii HOM05D005933 ORTHO05D007366 1.5e-31 141.7 461 26.5
Sc13g0001730 Simmondsia chinensis HOM05D005933 ORTHO05D007366 3.4e-31 140.6 137 53.3
TAR633G2604 Trochodendron aralioides HOM05D005933 ORTHO05D007366 5.9e-31 139.8 102 65.7
BcaNung03522 Brassica carinata HOM05D005933 ORTHO05D007366 3.2e-29 134.0 146 49.3
TAR636G2120 Trochodendron aralioides HOM05D005933 ORTHO05D007366 2.7e-28 131.0 116 55.2
Nn8g40508 Nelumbo nucifera HOM05D005933 ORTHO05D007366 4.1e-16 90.5 67 62.7
Dinv12483 Davidia involucrata HOM05D005933 ORTHO05D007366 3.5e-15 87.4 114 47.4
SHI32976 Sapria himalayana HOM05D000105 ORTHO05D000023 3.2e-13 80.9 117 45.3
Cre01.g043500 Chlamydomonas reinhardtii HOM05D005933 ORTHO05D007366 4.7e-12 77.0 488 22.1
Nn8g40507 Nelumbo nucifera HOM05D005933 ORTHO05D007366 1.8e-11 75.1 103 42.7
Rhsim03G0024000 Rhododendron simsii HOM05D005933 ORTHO05D007366 9.7e-10 69.3 55 65.5
Rhsim03G0022600 Rhododendron simsii HOM05D005933 ORTHO05D007366 3.7e-09 67.4 52 67.3


User provided reference genes

Program Settings