Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 2044.2 1042 100.0
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1972.6 1044 96.5
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1960.7 1045 96.3
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1846.6 1043 91.2
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1738.8 1049 84.2
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1727.6 1042 84.5
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1724.9 1046 84.2
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1719.1 1039 83.7
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1716.8 1043 84.5
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1702.2 1061 81.9
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1699.1 1061 81.8
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1696.4 1037 83.6
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1695.6 1037 83.6
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1694.9 1043 83.3
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1694.5 1047 83.2
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1688.3 1018 83.7
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1687.2 1048 82.4
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1683.7 1046 81.8
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1682.9 1015 83.8
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1682.2 1049 82.7
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1679.8 1056 81.2
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1676.8 1047 81.9
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1674.4 1062 81.7
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1672.9 1054 81.0
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1672.9 1041 81.7
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1669.4 1055 80.9
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1667.5 1045 81.2
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1664.4 1045 80.9
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1664.0 1047 80.9
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1658.3 1045 80.8
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1657.5 1053 80.1
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1656.3 1048 80.4
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1655.2 1063 80.1
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1653.6 1017 82.1
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1651.7 1048 80.3
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1649.0 1045 80.3
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1648.6 1045 79.3
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1647.5 1038 80.5
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1647.1 1079 78.5
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1645.9 1056 80.4
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1645.2 1049 80.6
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1642.5 1045 80.0
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1637.5 1044 80.1
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1630.2 1047 79.7
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1629.8 1049 79.5
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1629.0 1065 79.0
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1628.6 1050 79.2
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1624.0 1050 78.9
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1622.4 1054 78.9
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1621.7 1050 78.7
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1621.3 1059 79.2
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1615.5 1046 77.9
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1614.7 1046 78.5
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1610.9 1043 78.8
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1610.9 1052 77.8
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1609.7 1046 78.6
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1608.6 1051 78.1
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1606.3 1044 78.9
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1604.0 1055 78.2
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1604.0 1050 79.0
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1604.0 1023 78.9
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1602.4 1043 77.8
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1600.1 1045 78.3
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1593.6 1081 76.6
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1592.0 1044 78.1
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1588.9 1052 78.0
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1588.5 1052 76.9
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1584.7 1052 76.0
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1584.3 1052 76.2
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1582.0 1052 76.0
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1580.1 1050 76.0
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1576.6 1058 76.8
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1575.1 1054 76.0
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1571.6 1029 78.5
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1569.7 1052 75.6
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1568.1 1044 76.7
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1567.4 1053 78.0
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1567.0 1053 75.8
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1565.4 1055 75.2
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1565.4 1055 75.2
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1565.1 1052 75.7
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1563.9 1043 76.2
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1562.4 1053 78.2
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1562.4 1037 76.6
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1562.4 1021 77.6
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1560.8 1053 78.1
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1557.0 1056 74.5
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1555.8 1052 75.3
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1555.0 1056 74.4
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1554.7 1052 75.2
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1554.7 1062 75.6
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1545.0 1095 75.0
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1540.8 1093 74.9
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1536.5 1056 74.0
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1534.2 1044 74.7
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1527.7 1046 74.4
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1516.5 1151 69.2
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1500.3 1020 75.2
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1498.0 1022 74.1
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1497.3 1054 73.3
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1446.4 1048 73.4
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1436.4 1022 71.9
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1405.2 1045 71.2
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1377.1 947 75.1
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1375.1 1045 69.3
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1366.7 958 72.2
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1345.9 1038 67.9
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1345.1 1014 69.8
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1345.1 961 70.3
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1330.5 1029 68.6
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1298.9 1021 65.0
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1237.2 822 75.9
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1140.9 1020 58.1
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 0.0e+00 1108.6 1017 58.9
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 0.0e+00 1107.0 760 76.3
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 1.4e-310 1069.7 1029 55.5
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 1.6e-309 1066.2 1023 55.0
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.4e-297 1026.5 1012 57.1
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 3.4e-296 1021.9 621 85.2
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 1.3e-295 1020.0 711 71.7
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 2.1e-293 1012.7 711 71.4
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.7e-277 959.1 964 57.2
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 3.4e-272 942.2 1035 51.9
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 4.2e-270 935.3 619 76.9
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 2.8e-266 922.5 1040 52.0
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 7.6e-264 914.4 1028 51.8
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 7.2e-246 854.7 553 78.3
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 6.3e-242 841.6 480 88.8
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 3.4e-219 766.1 448 87.5
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 2.6e-211 740.0 1029 44.6
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 6.4e-194 682.2 437 78.7
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 9.9e-187 658.3 399 81.0
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 1.3e-183 647.9 1017 41.1
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 6.8e-180 635.6 387 83.5
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.4e-179 633.3 481 69.0
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 7.3e-174 615.5 511 61.1
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 3.4e-171 606.7 454 67.6
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 6.0e-168 595.9 1042 36.8
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 4.6e-152 543.1 415 65.3
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.2e-145 520.0 373 71.6
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.0e-143 515.4 367 71.7
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.0e-143 515.4 367 71.7
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 3.1e-140 503.8 566 52.5
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 1.0e-138 498.8 507 55.6
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.2e-138 497.7 372 71.0
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 1.5e-134 485.0 322 74.8
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 8.8e-127 459.1 1089 31.8
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 5.7e-126 456.4 586 46.8
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 6.5e-122 443.0 667 41.2
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 1.9e-113 414.8 277 75.1
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.5e-102 378.6 290 63.4
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 8.6e-90 336.3 195 85.1
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 1.1e-89 335.9 281 61.6
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.1e-89 335.9 516 43.4
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 1.4e-79 302.4 508 36.4
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 6.0e-75 287.0 398 44.7
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 1.9e-73 282.0 417 43.9
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 2.8e-72 278.1 185 77.3
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 8.3e-69 266.5 231 61.0
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.8e-62 243.8 224 59.4
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 2.2e-61 241.9 135 85.9
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.2e-60 238.0 305 48.5
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 6.0e-51 207.2 162 69.8
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 1.6e-48 199.1 137 67.2
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 8.1e-48 196.8 128 79.7
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 5.3e-47 194.1 143 70.6
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 3.5e-43 181.4 191 48.7
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.1e-35 155.6 123 67.5
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 2.7e-35 155.2 176 52.8
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 2.5e-33 148.7 253 40.7
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 2.8e-32 145.2 204 40.7
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.9e-28 132.5 91 68.1
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 3.7e-24 118.2 88 63.6
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 9.0e-23 113.6 268 32.8
MBI19_g01203_MAGBIO Magnolia biondii HOM05D001745 ORTHO05D001772 1.3e-13 83.2 66 62.1
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 1.4e-12 79.7 72 50.0
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 1.9e-12 79.3 70 54.3
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 4.7e-11 74.7 55 70.9
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 6.1e-11 74.3 49 69.4
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 6.7e-10 70.9 69 49.3


User provided reference genes

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