Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 6.7e-148 527.3 267 100.0
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 7.4e-139 497.3 267 94.0
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 2.6e-136 488.8 267 95.1
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 1.2e-115 420.2 226 93.4
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 8.9e-108 394.0 271 75.3
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 8.9e-108 394.0 272 75.0
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 9.8e-107 390.6 272 74.6
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 1.3e-106 390.2 272 76.1
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.7e-106 389.8 272 75.0
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 2.4e-105 386.0 274 74.5
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 2.4e-105 386.0 272 75.0
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 2.0e-104 382.9 274 72.6
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 3.5e-104 382.1 271 72.7
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 7.8e-104 380.9 270 74.4
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.7e-103 379.8 274 73.4
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 2.3e-103 379.4 271 73.8
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 2.3e-103 379.4 273 74.4
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 3.9e-103 378.6 273 72.9
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 3.9e-103 378.6 274 72.6
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 6.6e-103 377.9 271 70.1
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 8.6e-103 377.5 273 72.9
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 8.6e-103 377.5 273 72.9
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 1.1e-102 377.1 272 72.8
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 1.5e-102 376.7 272 73.5
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 2.5e-102 375.9 273 72.5
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 3.3e-102 375.6 272 72.8
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 3.3e-102 375.6 272 73.2
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 3.3e-102 375.6 271 71.2
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 3.3e-102 375.6 274 71.5
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 3.3e-102 375.6 274 71.5
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 4.3e-102 375.2 274 70.4
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 7.3e-102 374.4 275 72.4
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 9.5e-102 374.0 274 71.5
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 1.2e-101 373.6 271 69.7
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 1.6e-101 373.2 271 70.5
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 2.8e-101 372.5 272 72.1
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 2.8e-101 372.5 271 70.8
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 3.6e-101 372.1 272 73.2
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 3.6e-101 372.1 273 72.2
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 4.7e-101 371.7 273 70.0
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 4.7e-101 371.7 272 71.3
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 4.7e-101 371.7 282 70.9
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 4.7e-101 371.7 274 71.5
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 6.2e-101 371.3 272 71.3
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 6.2e-101 371.3 272 71.3
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 8.1e-101 370.9 272 72.1
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 1.1e-100 370.5 273 71.8
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 1.4e-100 370.2 275 71.6
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 2.3e-100 369.4 272 72.4
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 3.1e-100 369.0 271 73.1
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 3.1e-100 369.0 272 71.7
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 5.2e-100 368.2 274 68.2
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 6.8e-100 367.9 275 71.3
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 8.9e-100 367.5 272 71.7
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 8.9e-100 367.5 272 69.9
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 1.2e-99 367.1 268 72.0
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 4.4e-99 365.2 272 70.6
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 5.8e-99 364.8 286 68.9
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 5.8e-99 364.8 268 70.1
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 1.7e-98 363.2 299 67.2
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 4.9e-98 361.7 273 67.4
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 6.4e-98 361.3 272 69.1
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 1.1e-97 360.5 271 70.1
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 1.1e-97 360.5 271 69.4
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 1.4e-97 360.1 272 71.0
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 2.4e-97 359.4 285 69.1
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 4.1e-97 358.6 273 69.2
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 4.1e-97 358.6 274 70.8
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 5.4e-97 358.2 271 70.1
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 7.1e-97 357.8 272 69.5
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 9.2e-97 357.5 272 69.1
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.6e-96 356.7 272 69.9
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 3.5e-96 355.5 272 68.8
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 3.5e-96 355.5 272 68.8
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 7.8e-96 354.4 274 68.6
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 7.8e-96 354.4 274 68.6
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.3e-95 353.6 272 69.1
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 1.3e-95 353.6 307 63.5
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 1.3e-95 353.6 307 63.5
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.3e-95 353.6 273 69.2
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.7e-95 353.2 272 69.5
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 1.7e-95 353.2 284 67.3
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 3.9e-95 352.1 274 69.0
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 1.9e-94 349.7 331 58.6
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 2.5e-94 349.4 275 68.0
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 7.3e-94 347.8 272 69.1
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 1.2e-93 347.1 272 69.5
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 1.2e-93 347.1 272 69.5
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 2.1e-93 346.3 272 67.3
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 2.1e-93 346.3 271 69.4
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 4.7e-93 345.1 272 66.9
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 1.8e-92 343.2 272 67.6
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 4.0e-92 342.0 275 67.3
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 1.5e-91 340.1 344 55.5
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 2.0e-91 339.7 297 64.0
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 2.6e-91 339.3 273 67.4
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 3.4e-91 339.0 276 66.3
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 1.3e-90 337.0 272 68.4
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.3e-90 337.0 287 65.9
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 2.2e-90 336.3 273 65.9
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 2.9e-90 335.9 272 67.6
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 8.4e-90 334.3 274 66.4
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 1.4e-89 333.6 236 74.6
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 1.9e-89 333.2 274 66.4
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 5.4e-89 331.6 273 67.8
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 9.2e-89 330.9 273 67.4
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 2.1e-88 329.7 255 67.8
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 3.5e-88 328.9 270 66.3
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 6.0e-88 328.2 257 68.5
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 3.0e-87 325.9 275 66.5
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 1.1e-86 323.9 263 67.7
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 1.5e-86 323.6 319 57.7
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 1.2e-85 320.5 294 58.5
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 2.1e-85 319.7 272 63.6
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 1.8e-84 316.6 230 71.3
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 2.4e-84 316.2 273 63.0
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 3.1e-84 315.8 333 56.5
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 4.0e-84 315.5 275 64.0
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 6.8e-84 314.7 274 62.8
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 7.6e-83 311.2 230 70.9
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 2.9e-82 309.3 232 70.7
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 8.4e-82 307.8 269 62.8
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 3.2e-81 305.8 231 69.7
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 3.2e-81 305.8 236 67.8
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 1.2e-80 303.9 278 61.9
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 8.7e-79 297.7 232 66.8
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 1.1e-76 290.8 241 65.6
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 5.8e-75 285.0 261 62.5
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 1.1e-73 280.8 275 57.8
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 6.0e-72 275.0 279 56.6
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 1.7e-71 273.5 337 50.1
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 2.3e-71 273.1 362 49.4
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 9.6e-70 267.7 269 58.4
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 1.3e-69 267.3 227 63.0
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 2.6e-67 259.6 272 58.1
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 3.8e-66 255.8 286 53.8
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 9.3e-65 251.1 265 52.8
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 1.5e-62 243.8 272 50.4
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 5.6e-62 241.9 277 51.3
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 3.1e-60 236.1 194 66.5
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 1.5e-59 233.8 236 56.4
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 2.0e-59 233.4 172 67.4
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 4.5e-59 232.3 201 63.7
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 1.7e-58 230.3 231 58.9
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 6.5e-58 228.4 259 49.4
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 3.2e-57 226.1 270 48.5
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 1.8e-55 220.3 181 65.7
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 3.0e-55 219.5 171 65.5
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 3.0e-55 219.5 170 65.9
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 3.9e-55 219.2 148 71.6
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 3.9e-55 219.2 263 49.0
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 2.4e-52 209.9 150 69.3
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 1.1e-49 201.1 143 69.2
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 2.3e-47 193.4 161 67.7
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 3.0e-47 193.0 171 63.2
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 3.3e-46 189.5 257 46.7
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 4.3e-46 189.1 131 73.3
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 3.4e-43 179.5 151 62.9
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 2.2e-42 176.8 199 50.3
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 7.2e-41 171.8 216 47.2
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 7.2e-41 171.8 127 67.7
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 2.0e-38 163.7 196 50.5
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.0e-34 151.4 231 42.0
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 4.2e-33 146.0 134 56.0
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 3.3e-30 136.3 133 60.2
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 3.3e-30 136.3 178 48.3
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 2.8e-29 133.3 92 71.7
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 9.1e-28 128.3 160 48.8
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 4.5e-27 125.9 269 38.3
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.6e-24 117.5 72 77.8
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 3.6e-24 116.3 145 52.4
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 1.4e-23 114.4 90 67.8
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 2.8e-21 106.7 74 71.6
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 1.7e-18 97.4 239 30.5
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 6.5e-18 95.5 74 66.2
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 5.5e-17 92.4 63 69.8
SEGI_06119 Sequoiadendron giganteum HOM05D001715 ORTHO05D000497 7.2e-09 65.5 56 57.1
HPP92_019650 Vanilla planifolia HOM05D001715 ORTHO05D004824 7.2e-09 65.5 212 31.6
CSS0027227 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 6.1e-08 62.4 135 33.3


User provided reference genes

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