Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 7.7e-257 890.2 522 100.0
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 2.3e-224 782.3 489 91.8
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 5.2e-221 771.2 489 91.0
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 5.0e-171 605.1 496 67.5
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 1.4e-162 577.0 489 66.7
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 9.7e-159 564.3 491 66.8
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 1.2e-156 557.4 485 69.3
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 1.5e-156 557.0 490 65.5
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 5.9e-156 555.1 487 66.3
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 2.9e-155 552.7 486 66.3
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 2.9e-155 552.7 485 62.9
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 2.9e-155 552.7 483 67.5
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 6.5e-155 551.6 483 70.8
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 8.5e-155 551.2 483 67.3
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 8.5e-155 551.2 496 66.3
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.1e-154 550.8 485 68.5
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 9.4e-154 547.7 490 66.7
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 2.1e-153 546.6 483 72.5
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 3.6e-153 545.8 507 64.1
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 4.7e-153 545.4 489 63.0
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 4.7e-153 545.4 485 63.9
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 1.4e-152 543.9 485 64.1
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 6.7e-152 541.6 492 63.2
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 7.4e-151 538.1 481 69.0
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 9.7e-151 537.7 481 69.0
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 1.7e-150 537.0 488 67.4
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 3.7e-150 535.8 489 64.0
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 3.7e-150 535.8 488 60.7
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 5.3e-149 531.9 481 70.9
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 9.1e-149 531.2 490 60.4
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 1.2e-148 530.8 495 60.2
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 5.9e-148 528.5 486 69.5
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 7.7e-148 528.1 419 68.5
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 2.2e-147 526.6 490 63.1
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 6.5e-147 525.0 498 61.0
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 8.5e-147 524.6 486 63.2
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 8.5e-147 524.6 485 62.5
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 1.9e-146 523.5 486 60.5
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.9e-146 523.5 479 60.8
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 1.9e-146 523.5 491 63.7
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 4.2e-146 522.3 502 62.9
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 5.5e-146 521.9 487 60.0
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 2.1e-145 520.0 487 59.8
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 8.0e-145 518.1 490 70.0
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 2.3e-144 516.5 387 75.7
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 4.0e-144 515.8 480 68.1
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 5.2e-144 515.4 488 66.0
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 5.2e-144 515.4 488 62.5
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 2.0e-143 513.5 486 60.9
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 2.0e-143 513.5 493 59.0
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 2.6e-143 513.1 488 60.0
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 2.6e-143 513.1 465 60.9
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 2.6e-143 513.1 480 62.3
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 4.4e-143 512.3 502 59.6
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 5.7e-143 511.9 490 59.4
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 5.7e-143 511.9 482 58.7
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 7.5e-143 511.5 488 64.8
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 1.7e-142 510.4 491 59.9
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 2.2e-142 510.0 492 58.9
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 2.8e-142 509.6 490 57.8
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 4.8e-142 508.8 486 59.1
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 8.3e-142 508.1 492 60.6
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 1.1e-141 507.7 491 58.9
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 1.4e-141 507.3 489 59.7
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.8e-141 506.9 495 59.4
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 3.1e-141 506.1 481 66.7
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 4.1e-141 505.8 489 64.8
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 5.3e-141 505.4 478 62.8
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 5.3e-141 505.4 487 60.0
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 7.0e-141 505.0 486 58.2
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 1.2e-140 504.2 385 73.8
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 2.0e-140 503.4 482 57.7
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 4.5e-140 502.3 485 66.0
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 1.0e-139 501.1 485 65.8
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 1.7e-139 500.4 496 58.9
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 2.2e-139 500.0 491 60.9
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 2.2e-139 500.0 499 60.7
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 3.8e-139 499.2 486 60.7
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 6.5e-139 498.4 461 62.5
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 8.5e-139 498.0 488 60.7
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 1.1e-138 497.7 484 59.9
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 1.1e-138 497.7 484 66.9
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 2.5e-138 496.5 484 68.0
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 2.5e-138 496.5 488 60.9
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 3.2e-138 496.1 477 64.2
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 7.2e-138 495.0 505 56.8
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 9.4e-138 494.6 521 57.8
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 2.1e-137 493.4 484 63.4
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 2.7e-137 493.0 499 62.3
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 3.6e-137 492.7 494 60.9
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 6.1e-137 491.9 488 61.1
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 6.1e-137 491.9 502 59.4
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.0e-136 491.1 495 56.2
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 1.0e-136 491.1 487 60.4
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 1.4e-136 490.7 494 56.3
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 5.2e-136 488.8 487 55.0
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 6.8e-136 488.4 504 56.7
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 8.8e-136 488.0 499 63.7
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 2.6e-135 486.5 477 58.5
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 4.4e-135 485.7 424 62.7
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 5.7e-135 485.3 489 63.0
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 9.8e-135 484.6 488 60.9
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 9.8e-135 484.6 462 59.3
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 4.8e-134 482.3 485 62.3
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 8.3e-134 481.5 487 60.6
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 1.1e-133 481.1 495 60.6
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 1.4e-133 480.7 499 55.9
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 3.1e-133 479.6 492 57.5
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 4.1e-133 479.2 493 59.2
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 9.1e-133 478.0 481 62.0
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 1.2e-132 477.6 486 62.1
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 1.2e-132 477.6 503 54.7
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 3.5e-132 476.1 484 62.4
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 5.9e-132 475.3 484 59.1
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 1.7e-131 473.8 383 64.5
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 2.3e-131 473.4 493 61.5
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 3.8e-131 472.6 489 59.5
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 3.8e-131 472.6 460 62.6
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 3.8e-131 472.6 492 54.9
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 3.8e-131 472.6 500 53.6
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 5.0e-131 472.2 483 61.1
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 8.6e-131 471.5 483 60.9
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 1.1e-130 471.1 495 54.7
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 5.5e-130 468.8 499 55.9
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 9.5e-130 468.0 486 62.3
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 1.2e-129 467.6 511 52.3
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 1.6e-129 467.2 484 60.5
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 3.6e-129 466.1 487 58.5
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 8.0e-129 464.9 506 54.2
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 5.7e-127 458.8 485 62.1
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.1e-125 454.5 480 60.4
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.8e-125 453.8 488 50.4
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 5.4e-125 452.2 407 62.2
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 9.2e-125 451.4 479 61.6
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 1.6e-124 450.7 458 60.7
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 2.3e-123 446.8 397 58.2
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.2e-121 441.0 419 58.0
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 2.1e-121 440.3 490 53.3
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 8.0e-121 438.3 313 70.6
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 4.9e-118 429.1 392 56.4
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 1.6e-116 424.1 427 55.3
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 5.0e-115 419.1 387 63.6
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 2.5e-114 416.8 404 61.1
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 8.9e-112 408.3 267 75.3
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 1.0e-107 394.8 492 51.8
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 3.9e-99 366.3 379 54.4
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 1.1e-98 364.8 494 43.1
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 4.3e-90 336.3 482 52.7
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.2e-87 328.2 345 51.6
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.5e-87 327.8 485 45.2
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 3.2e-85 320.1 466 39.7
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 1.7e-62 244.6 362 43.4
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 2.4e-56 224.2 191 62.8
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 4.1e-56 223.4 192 79.2
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 1.0e-51 208.8 201 57.2
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 4.3e-50 203.4 358 35.2
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 9.4e-45 185.7 374 41.4
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 4.1e-40 170.2 117 65.8
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 8.2e-33 146.0 277 33.2
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 1.1e-32 145.6 99 66.7
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 4.1e-32 143.7 134 67.9
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 5.0e-30 136.7 129 68.2
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 1.2e-28 132.1 126 65.1
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 2.7e-28 131.0 144 47.2
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.2e-26 125.6 99 60.6
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 1.8e-24 118.2 316 31.6
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 2.4e-24 117.9 142 50.7
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 1.0e-22 112.5 134 43.3
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 1.0e-22 112.5 134 43.3
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 7.5e-18 96.3 326 31.9
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 7.5e-18 96.3 348 25.6
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 6.3e-17 93.2 70 52.9
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 1.2e-10 72.4 47 63.8
Cfa000173 Carpinus fangiana HOM05D000321 ORTHO05D000204 3.5e-07 60.8 162 43.8


User provided reference genes

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