Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 0.0e+00 1812.3 915 100.0
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 0.0e+00 1300.0 865 79.8
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 0.0e+00 1292.3 904 77.5
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 0.0e+00 1102.0 804 73.1
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 5.8e-175 619.0 866 43.2
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 1.3e-174 617.8 847 46.2
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 1.0e-171 608.2 786 47.5
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 4.2e-165 586.3 852 43.7
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 2.1e-164 583.9 845 44.4
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 1.1e-160 571.6 842 42.5
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 7.1e-157 558.9 839 43.9
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 1.8e-155 554.3 857 41.5
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 3.0e-155 553.5 810 44.2
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 8.7e-155 552.0 852 42.5
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 5.7e-154 549.3 859 41.1
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 1.6e-153 547.7 810 44.2
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 3.1e-152 543.5 821 42.0
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 1.7e-150 537.7 823 42.8
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 2.9e-150 537.0 845 42.0
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 8.5e-150 535.4 855 40.4
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.1e-149 535.0 852 40.4
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 1.1e-149 535.0 852 40.4
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.6e-148 531.2 841 41.1
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 2.1e-148 530.8 907 39.6
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 6.1e-148 529.3 854 41.8
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 7.9e-148 528.9 825 39.3
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 2.3e-147 527.3 812 42.5
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 2.2e-145 520.8 846 40.2
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 6.9e-144 515.8 964 37.7
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 2.9e-142 510.4 838 39.9
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 5.0e-142 509.6 836 40.7
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.4e-141 508.1 799 40.9
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 1.4e-141 508.1 1002 36.4
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 4.2e-141 506.5 838 40.6
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 5.5e-141 506.1 841 39.0
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 1.2e-140 505.0 799 41.6
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 2.6e-138 497.3 838 40.1
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 2.8e-137 493.8 847 39.3
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 3.7e-137 493.4 855 38.4
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 1.1e-136 491.9 1027 35.4
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 1.5e-135 488.0 823 38.4
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 3.5e-135 486.9 944 37.4
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 3.5e-135 486.9 854 39.2
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.1e-133 481.9 946 37.3
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.0e-127 461.1 871 37.9
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.5e-125 454.9 963 36.3
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 8.0e-124 449.1 794 38.9
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 2.0e-122 444.5 850 35.8
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 8.2e-121 439.1 865 35.5
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 2.0e-119 434.5 942 34.6
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 2.7e-119 434.1 837 35.2
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.1e-117 428.7 842 37.2
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.9e-117 427.9 803 36.4
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 2.5e-117 427.6 851 35.5
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 5.5e-117 426.4 837 36.2
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 3.6e-116 423.7 841 34.6
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.4e-115 421.8 568 44.5
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 8.8e-115 419.1 829 34.5
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 9.8e-114 415.6 842 36.3
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 3.7e-113 413.7 832 35.8
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 4.5e-111 406.8 831 35.9
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 7.7e-111 406.0 816 35.3
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 6.6e-110 402.9 826 35.8
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.5e-109 401.7 778 36.5
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.2e-108 398.7 882 34.1
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.2e-108 398.7 833 34.7
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 8.0e-108 396.0 654 39.0
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 3.0e-107 394.0 799 35.5
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 6.8e-107 392.9 667 41.8
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 6.8e-107 392.9 841 34.0
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.2e-105 387.9 667 41.5
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 2.8e-105 387.5 832 33.9
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 3.7e-105 387.1 799 34.5
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 3.7e-105 387.1 792 34.8
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 3.7e-105 387.1 839 33.5
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 6.3e-105 386.3 877 34.3
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 8.3e-105 386.0 807 35.6
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 1.1e-104 385.6 824 34.0
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.8e-104 384.8 823 33.5
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 3.3e-101 374.0 828 32.1
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 5.6e-101 373.2 716 37.3
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 4.7e-100 370.2 819 33.6
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 3.1e-99 367.5 915 32.3
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 3.1e-99 367.5 819 34.6
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 5.2e-99 366.7 818 33.9
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 8.9e-99 365.9 820 33.0
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 5.8e-98 363.2 831 32.4
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 5.8e-98 363.2 833 31.6
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 1.1e-96 359.0 758 33.4
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 9.2e-96 355.9 781 33.7
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 9.2e-96 355.9 861 33.4
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.7e-95 354.4 539 42.1
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.6e-92 345.1 826 32.2
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 2.8e-92 344.4 868 32.6
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 1.8e-91 341.7 711 37.8
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 1.2e-82 312.4 468 41.0
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 4.9e-81 307.0 586 37.5
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 1.4e-80 305.4 850 30.5
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.6e-79 302.0 663 37.1
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 4.6e-79 300.4 813 31.0
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 3.0e-78 297.7 623 36.0
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 3.9e-78 297.4 459 39.4
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 3.6e-76 290.8 488 39.3
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 5.2e-75 287.0 496 39.5
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 5.8e-74 283.5 733 32.1
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 7.6e-74 283.1 465 38.5
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 3.8e-73 280.8 498 37.8
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.6e-71 275.4 488 36.9
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 2.1e-71 275.0 492 37.0
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 6.6e-70 270.0 484 37.6
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 6.6e-70 270.0 472 38.1
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 2.5e-69 268.1 617 34.8
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 2.5e-69 268.1 474 37.8
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 2.5e-69 268.1 474 37.8
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 9.6e-69 266.2 800 29.2
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 2.8e-68 264.6 512 35.9
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 4.8e-68 263.8 651 32.0
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 1.3e-65 255.8 709 29.6
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 1.7e-65 255.4 668 31.4
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 3.8e-65 254.2 625 32.8
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 9.3e-64 249.6 653 30.6
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 2.1e-63 248.4 622 31.8
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 6.0e-63 246.9 668 31.3
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 7.8e-63 246.5 485 37.3
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 5.1e-62 243.8 674 29.1
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 8.7e-62 243.0 649 29.7
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 6.2e-60 236.9 697 30.7
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 6.2e-60 236.9 856 26.8
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 1.4e-59 235.7 652 30.4
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 1.5e-53 215.7 755 28.1
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 5.6e-53 213.8 411 36.0
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 6.2e-52 210.3 791 25.9
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 6.9e-51 206.8 838 26.5
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 4.5e-50 204.1 843 26.1
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.2e-49 201.8 823 27.7
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 4.6e-47 194.1 487 32.6
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 3.1e-43 181.4 298 42.3
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 2.0e-42 178.7 269 41.6
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.0e-42 178.7 436 32.6
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 1.3e-41 176.0 471 33.1
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 7.9e-39 166.8 695 28.2
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.9e-38 164.5 439 32.3
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.2e-31 142.9 194 47.9
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 4.1e-27 127.9 484 26.2
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 5.3e-27 127.5 362 29.8
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.5e-21 109.4 87 54.0
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 1.8e-19 102.4 180 36.7
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 2.6e-18 98.6 89 51.7
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 3.5e-18 98.2 465 23.9
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.0e-17 96.7 859 23.4
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 1.3e-17 96.3 180 36.1
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 6.5e-17 94.0 459 24.0
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 2.5e-16 92.0 126 42.1
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 3.3e-13 81.6 77 42.9
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 3.1e-11 75.1 84 42.9
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-09 68.9 101 32.7
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 8.5e-09 67.0 71 33.8
MCO08G197 Micromonas commoda HOM05D004447 ORTHO05D005973 4.2e-08 64.7 64 40.6
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 4.7e-07 61.2 70 44.3
BcaB05g24188 Brassica carinata HOM05D004295 ORTHO05D004901 1.0e-06 60.1 48 52.1
Pp3c1_860 Physcomitrium patens HOM05D003353 ORTHO05D003751 1.4e-06 59.7 62 35.5
AagrBONN_evm.TU.Sc2ySwM_228.4740 Anthoceros agrestis HOM05D000465 ORTHO05D000301 1.8e-06 59.3 72 41.7
AagrBONN_evm.TU.Sc2ySwM_117.2758 Anthoceros agrestis HOM05D059405 ORTHO05D004901 2.3e-06 58.9 455 23.5
BcaB07g30913 Brassica carinata HOM05D004295 ORTHO05D004901 2.3e-06 58.9 48 50.0


User provided reference genes

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