Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G000240 Citrullus lanatus HOM05D004885 ORTHO05D006124 1.8e-47 192.2 95 100.0
CsaV3_3G000260 Cucumis sativus L. HOM05D004885 ORTHO05D006124 3.0e-34 148.3 122 65.6
MELO3C000213.2 Cucumis melo HOM05D004885 ORTHO05D006124 4.4e-25 117.9 65 87.7
Dinv08168 Davidia involucrata HOM05D004885 ORTHO05D006124 8.3e-16 87.0 117 41.0
Sed0002359 Sechium edule HOM05D004885 ORTHO05D006124 1.1e-15 86.7 69 63.8
Actinidia22902 Actinidia chinensis HOM05D004885 ORTHO05D006124 7.0e-15 84.0 119 42.0
Atru.chr4.1890 Acer truncatum HOM05D004885 ORTHO05D006124 4.5e-14 81.3 117 39.3
TWI53G2056 Tripterygium wilfordii HOM05D004885 ORTHO05D006124 4.5e-14 81.3 120 39.2
Atru.chr3.136 Acer truncatum HOM05D004885 ORTHO05D006124 7.7e-14 80.5 120 39.2
CiPaw.06G030500 Carya illinoinensis HOM05D004885 ORTHO05D006124 1.0e-13 80.1 120 38.3
Cc07_g11780 Coffea canephora HOM05D004885 ORTHO05D006124 1.3e-13 79.7 120 39.2
GSVIVG01026648001 Vitis vinifera HOM05D004885 ORTHO05D006124 1.7e-13 79.3 119 39.5
CANSAT80G0225 Cannabis sativa HOM05D004885 ORTHO05D006124 2.3e-13 79.0 117 39.3
TWI09G0982 Tripterygium wilfordii HOM05D004885 ORTHO05D006124 2.3e-13 79.0 120 38.3
Dinv40183 Davidia involucrata HOM05D004885 ORTHO05D006124 3.8e-13 78.2 118 37.3
CSS0014238 Camellia sinensis var. sinensis HOM05D004885 ORTHO05D006124 1.1e-12 76.6 118 39.0
ECA238G4274 Erigeron canadensis HOM05D004885 ORTHO05D006124 1.9e-12 75.9 123 37.4
Lj4C235G2 Lonicera japonica HOM05D004885 ORTHO05D006124 1.9e-12 75.9 129 36.4
Manes.01G155100 Manihot esculenta HOM05D004885 ORTHO05D006124 1.9e-12 75.9 123 40.7
RcHm_v2.0_Chr2g0097311 Rosa chinensis HOM05D004885 ORTHO05D006124 4.2e-12 74.7 110 43.6
Ciclev10025327m.g Citrus clementina HOM05D004885 ORTHO05D006124 5.5e-12 74.3 117 35.9
Hma1.2p1_0085F.1_g044730 Hydrangea macrophylla HOM05D004885 ORTHO05D006124 7.2e-12 73.9 118 37.3
QL04p013021 Quercus lobata HOM05D004885 ORTHO05D006124 7.2e-12 73.9 122 38.5
Haze_00453 Corylus avellana HOM05D004885 ORTHO05D006124 9.5e-12 73.6 121 36.4
MD17G1057100 Malus domestica HOM05D004885 ORTHO05D006124 9.5e-12 73.6 120 39.2
Hma1.2p1_0300F.1_g118050 Hydrangea macrophylla HOM05D004885 ORTHO05D006124 2.1e-11 72.4 111 38.7
MD15G1232400 Malus domestica HOM05D004885 ORTHO05D006124 2.8e-11 72.0 123 38.2
VMungo1215G0823 Vigna mungo HOM05D004885 ORTHO05D006124 2.8e-11 72.0 109 37.6
FAN26G3465 Fragaria x ananassa HOM05D004885 ORTHO05D006124 3.6e-11 71.6 112 40.2
MBI15_g00077_MAGBIO Magnolia biondii HOM05D004885 ORTHO05D006124 3.6e-11 71.6 118 37.3
FvH4_1g10450 Fragaria vesca HOM05D004885 ORTHO05D006124 4.7e-11 71.2 120 39.2
FAN28G2162 Fragaria x ananassa HOM05D004885 ORTHO05D006124 6.1e-11 70.9 110 40.0
MD02G1117700 Malus domestica HOM05D004885 ORTHO05D006124 6.1e-11 70.9 114 38.6
EL10Ac8g19196 Beta vulgaris HOM05D004885 ORTHO05D006124 1.0e-10 70.1 119 33.6
CSS0037388 Camellia sinensis var. sinensis HOM05D004885 ORTHO05D006124 1.0e-10 70.1 108 37.0
Medtr5g024150 Medicago truncatula HOM05D004885 ORTHO05D006124 1.4e-10 69.7 118 35.6
HanXRQChr14g0442521 Helianthus annuus HOM05D004885 ORTHO05D006124 2.3e-10 68.9 122 34.4
Cpa.g.sc365.1 Carica papaya HOM05D004885 ORTHO05D006124 4.0e-10 68.2 121 33.9
Prupe.7G181700 Prunus persica HOM05D004885 ORTHO05D006124 5.2e-10 67.8 123 38.2
Lj2g0026862 Lotus japonicus HOM05D004885 ORTHO05D006124 6.8e-10 67.4 118 35.6
Ca_24977_v3 Cicer arietinum L. HOM05D004885 ORTHO05D006124 8.8e-10 67.0 118 34.7
Glyma.01G159000 Glycine max HOM05D004885 ORTHO05D006124 1.2e-09 66.6 109 34.9
Nn4g22671 Nelumbo nucifera HOM05D004885 ORTHO05D006124 1.2e-09 66.6 119 32.8
Psat2g149880 Pisum sativum HOM05D004885 ORTHO05D006124 1.2e-09 66.6 109 34.9
TPR.G39950 Trifolium pratense HOM05D004885 ORTHO05D006124 1.5e-09 66.2 118 35.6
Eucgr.I02226 Eucalyptus grandis HOM05D004885 ORTHO05D006124 2.6e-09 65.5 119 36.1
Thecc.01G005900 Theobroma cacao HOM05D004885 ORTHO05D006124 4.4e-09 64.7 140 32.9
vmacro18463 Vaccinium macrocarpon HOM05D004885 ORTHO05D006124 4.4e-09 64.7 63 49.2
HPP92_017799 Vanilla planifolia HOM05D004885 ORTHO05D006124 4.4e-09 64.7 118 33.1
Peaxi162Scf01051g00141 Petunia axillaris HOM05D004885 ORTHO05D006124 7.5e-09 63.9 114 32.5
Glyma.11G085700 Glycine max HOM05D004885 ORTHO05D006124 9.8e-09 63.5 109 33.0
Phvul.002G116400 Phaseolus vulgaris HOM05D004885 ORTHO05D006124 9.8e-09 63.5 109 36.7
DCAR_006252 Daucus carota HOM05D004885 ORTHO05D006124 1.3e-08 63.2 119 31.1
Rhsim08G0027300 Rhododendron simsii HOM05D004885 ORTHO05D006124 1.7e-08 62.8 64 48.4
MD10G1065000 Malus domestica HOM05D004885 ORTHO05D006124 2.8e-08 62.0 117 34.2
Cc11_g03220 Coffea canephora HOM05D004885 ORTHO05D006124 1.1e-07 60.1 109 33.9
Migut.C00024 Erythranthe guttata HOM05D004885 ORTHO05D006124 1.1e-07 60.1 123 31.7
Sabra05G0033700 Salix brachista HOM05D004885 ORTHO05D006124 1.1e-07 60.1 147 28.6
Oeu012449.1 Olea europaea HOM05D004885 ORTHO05D006124 1.4e-07 59.7 111 35.1
TAR629G2658 Trochodendron aralioides HOM05D004885 ORTHO05D006124 1.4e-07 59.7 64 40.6
COL.COLO4_10588 Corchorus olitorius HOM05D004885 ORTHO05D006124 1.8e-07 59.3 139 29.5
Lalb_Chr09g0324741 Lupinus albus HOM05D004885 ORTHO05D006124 3.1e-07 58.5 110 32.7
QL04p012404 Quercus lobata HOM05D004885 ORTHO05D006124 4.1e-07 58.2 66 43.9
Hund03605 Selenicereus undatus HOM05D004885 ORTHO05D006124 4.1e-07 58.2 125 30.4
ATR0605G212 Amborella trichopoda HOM05D004885 ORTHO05D006124 5.4e-07 57.8 113 33.6
QL04p012417 Quercus lobata HOM05D002173 ORTHO05D002189 5.4e-07 57.8 135 32.6
Duzib147G0190 Durio zibethinus HOM05D004885 ORTHO05D006124 9.2e-07 57.0 137 29.9
Aqoxy3G00208 Aquilegia oxysepala HOM05D004885 ORTHO05D006124 1.2e-06 56.6 122 30.3
AT3G06540 Arabidopsis thaliana HOM05D004885 ORTHO05D006124 1.2e-06 56.6 120 33.3
Nitab4.5_0001936g0130 Nicotiana tabacum HOM05D004885 ORTHO05D006124 1.2e-06 56.6 112 29.5
PSO724G1376 Papaver somniferum HOM05D004885 ORTHO05D006124 1.2e-06 56.6 123 31.7
AUR62033951 Chenopodium quinoa HOM05D004885 ORTHO05D006124 2.0e-06 55.8 73 38.4
Potri.005G028900 Populus trichocarpa HOM05D004885 ORTHO05D006124 2.7e-06 55.5 63 42.9
CAN.G1238.6 Capsicum annuum HOM05D004885 ORTHO05D006124 3.5e-06 55.1 115 28.7
CDE06G1258 Ceratophyllum demersum HOM05D004885 ORTHO05D006124 4.5e-06 54.7 120 30.0
MELO3C013721.2 Cucumis melo HOM05D004885 ORTHO05D006124 4.5e-06 54.7 29 89.7
Gohir.A07G170900 Gossypium hirsutum HOM05D004885 ORTHO05D006124 4.5e-06 54.7 130 29.2
PGR102G0956 Punica granatum HOM05D004885 ORTHO05D006124 4.5e-06 54.7 110 32.7
arahy.Tifrunner.gnm1.ann1.E2QT4D Arachis hypogaea HOM05D004885 ORTHO05D006124 5.9e-06 54.3 71 36.6
arahy.Tifrunner.gnm1.ann1.P2H8QY Arachis hypogaea HOM05D004885 ORTHO05D006124 5.9e-06 54.3 71 36.6
AUR62029056 Chenopodium quinoa HOM05D004885 ORTHO05D006124 5.9e-06 54.3 118 28.8
Gohir.D07G177700 Gossypium hirsutum HOM05D004885 ORTHO05D006124 7.8e-06 53.9 142 29.6
Gorai.001G198800 Gossypium raimondii HOM05D004885 ORTHO05D006124 7.8e-06 53.9 142 29.6
MBI01_g31987_MAGBIO Magnolia biondii HOM05D004885 ORTHO05D006124 7.8e-06 53.9 65 43.1
Nitab4.5_0006177g0010 Nicotiana tabacum HOM05D004885 ORTHO05D006124 7.8e-06 53.9 113 29.2


User provided reference genes

Program Settings