Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 6.8e-99 364.0 184 100.0
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 6.8e-99 364.0 184 100.0
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 2.8e-97 358.6 184 98.4
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 2.8e-97 358.6 184 98.4
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 2.0e-95 352.4 184 95.7
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 3.5e-95 351.7 184 95.7
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 1.6e-87 326.2 184 86.4
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 1.6e-87 326.2 184 84.8
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 1.6e-87 326.2 184 85.3
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 7.8e-87 323.9 184 84.8
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 7.8e-87 323.9 184 84.8
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 8.6e-86 320.5 178 87.1
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.1e-85 320.1 184 83.2
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.5e-85 319.7 184 83.2
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.9e-85 319.3 184 83.2
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 2.5e-85 318.9 184 83.7
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 3.3e-85 318.5 184 84.2
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 4.3e-85 318.2 184 81.5
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 7.3e-85 317.4 184 83.7
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 9.5e-85 317.0 184 83.2
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 8.0e-84 313.9 184 83.2
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 8.0e-84 313.9 184 83.2
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 8.0e-84 313.9 184 82.6
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 1.4e-83 313.2 184 82.6
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 2.3e-83 312.4 184 82.1
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 5.2e-83 311.2 184 80.4
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 5.2e-83 311.2 184 83.2
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 6.8e-83 310.8 184 79.9
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 6.8e-83 310.8 184 83.2
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 8.9e-83 310.5 181 82.3
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 1.5e-82 309.7 184 81.5
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.6e-82 308.9 184 81.0
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 3.4e-82 308.5 184 81.0
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 4.4e-82 308.1 184 81.5
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 5.8e-82 307.8 177 83.1
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 5.8e-82 307.8 177 83.1
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 9.8e-82 307.0 184 81.0
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 9.8e-82 307.0 184 79.9
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 9.8e-82 307.0 184 79.9
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 9.8e-82 307.0 184 81.0
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 1.3e-81 306.6 183 79.8
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 2.9e-81 305.4 184 79.9
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 4.9e-81 304.7 184 79.3
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 4.9e-81 304.7 184 79.3
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 8.3e-81 303.9 184 79.3
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 8.3e-81 303.9 185 80.5
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 8.3e-81 303.9 181 80.1
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.4e-80 302.4 182 79.1
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 2.4e-80 302.4 182 79.1
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 2.4e-80 302.4 182 79.7
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 3.2e-80 302.0 182 80.2
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 3.2e-80 302.0 182 79.1
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 7.1e-80 300.8 184 79.9
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 1.2e-79 300.1 184 78.8
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 2.1e-79 299.3 184 75.5
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 2.7e-79 298.9 180 78.9
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 4.6e-79 298.1 182 79.7
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 1.0e-78 297.0 184 75.5
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.0e-78 297.0 184 77.2
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.3e-78 296.6 177 78.0
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.3e-78 296.6 184 77.7
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 3.0e-78 295.4 182 79.1
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 3.9e-78 295.0 182 78.6
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 5.1e-78 294.7 183 79.8
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 6.6e-78 294.3 182 77.5
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 6.6e-78 294.3 185 78.4
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 6.6e-78 294.3 184 77.7
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 8.6e-78 293.9 182 78.6
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 1.1e-77 293.5 182 76.4
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 1.5e-77 293.1 182 77.5
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 3.3e-77 292.0 184 76.1
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 5.6e-77 291.2 182 78.0
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 7.3e-77 290.8 181 74.6
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 2.1e-76 289.3 177 76.3
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 1.4e-75 286.6 184 73.4
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 4.0e-75 285.0 178 75.8
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 6.8e-75 284.3 184 73.4
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 6.8e-75 284.3 184 73.9
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 6.8e-75 284.3 182 72.0
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 1.2e-74 283.5 178 74.2
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 2.0e-74 282.7 184 73.9
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 2.0e-74 282.7 184 74.5
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 2.0e-74 282.7 184 74.5
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.6e-74 282.3 182 75.3
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 3.4e-74 282.0 184 70.7
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 3.4e-74 282.0 184 73.4
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 4.4e-74 281.6 184 71.7
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 7.6e-74 280.8 184 73.4
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 7.6e-74 280.8 182 74.7
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 7.6e-74 280.8 178 72.5
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 9.9e-74 280.4 177 77.4
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.3e-73 280.0 184 71.2
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 1.3e-73 280.0 178 75.8
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 1.7e-73 279.6 177 72.9
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 4.9e-73 278.1 184 72.8
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 6.4e-73 277.7 178 75.3
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 1.1e-72 276.9 185 73.5
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 1.4e-72 276.6 184 71.2
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 1.4e-72 276.6 185 71.9
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 2.4e-72 275.8 182 73.1
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 2.4e-72 275.8 182 73.1
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 2.4e-72 275.8 182 73.1
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 2.4e-72 275.8 187 71.7
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 5.4e-72 274.6 184 70.7
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 5.4e-72 274.6 185 70.8
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 1.6e-71 273.1 183 72.1
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.6e-71 273.1 180 71.7
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 2.7e-71 272.3 182 72.5
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 6.0e-71 271.2 178 71.3
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 6.0e-71 271.2 185 70.3
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 7.8e-71 270.8 182 70.9
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 1.0e-70 270.4 182 71.4
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 1.3e-70 270.0 179 70.9
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 3.0e-70 268.9 185 69.7
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 3.9e-70 268.5 193 69.9
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 3.9e-70 268.5 184 69.6
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 5.1e-70 268.1 182 70.3
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 5.1e-70 268.1 182 70.3
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 8.6e-70 267.3 179 70.9
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.6e-68 263.1 185 70.8
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 6.2e-68 261.2 170 73.5
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 1.4e-67 260.0 177 72.9
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 4.0e-67 258.5 180 70.0
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 8.9e-67 257.3 177 70.6
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 7.6e-66 254.2 184 67.4
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 4.9e-65 251.5 178 68.5
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 2.4e-64 249.2 178 68.0
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 3.3e-61 238.8 186 62.4
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 1.6e-60 236.5 179 65.9
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 1.3e-57 226.9 165 71.5
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 9.3e-56 220.7 179 59.2
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 1.0e-54 217.2 180 61.1
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 3.0e-54 215.7 182 62.1
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.2e-49 199.5 122 74.6
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 1.6e-47 193.4 184 54.9
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.1e-47 193.0 118 75.4
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 2.6e-42 176.0 197 49.2
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 1.6e-39 166.8 179 45.3
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 1.9e-37 159.8 159 50.3
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 2.4e-27 126.3 109 60.6
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 4.5e-26 122.1 76 76.3
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 7.7e-26 121.3 99 60.6
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 3.1e-19 99.4 165 35.8
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 5.5e-16 88.6 57 78.9
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 5.7e-13 78.6 55 67.3
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 5.7e-13 78.6 55 67.3
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 7.7e-10 68.2 41 78.0


User provided reference genes

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