Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 7.8e-119 430.6 242 100.0
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 2.8e-116 422.2 242 93.4
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 2.3e-115 419.1 242 92.6
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 2.5e-109 399.1 241 87.6
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 4.6e-95 351.7 239 82.0
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 4.6e-95 351.7 237 77.6
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 6.0e-95 351.3 240 77.5
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 7.8e-95 350.9 240 76.7
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 1.7e-94 349.7 242 80.2
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 3.0e-94 349.0 239 81.6
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 8.6e-94 347.4 242 82.2
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 8.6e-94 347.4 243 79.8
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 1.1e-93 347.1 242 81.8
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 1.1e-93 347.1 242 77.7
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 7.3e-93 344.4 243 75.3
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 7.3e-93 344.4 239 76.2
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 3.6e-92 342.0 243 78.2
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 1.8e-91 339.7 242 80.6
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 3.1e-91 339.0 243 77.8
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 4.0e-91 338.6 239 79.9
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 6.8e-91 337.8 240 80.4
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 8.9e-91 337.4 242 77.3
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 2.0e-90 336.3 239 79.5
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 2.6e-90 335.9 236 79.2
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 3.4e-90 335.5 243 77.0
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 4.4e-90 335.1 239 79.1
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 4.4e-90 335.1 243 76.5
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 5.8e-90 334.7 243 77.0
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 7.6e-90 334.3 239 79.5
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 9.9e-90 334.0 237 79.3
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 1.7e-89 333.2 242 78.9
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 2.2e-89 332.8 242 77.3
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 2.2e-89 332.8 242 77.7
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 2.2e-89 332.8 239 75.3
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.9e-89 332.4 240 75.8
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 2.9e-89 332.4 242 74.4
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 2.9e-89 332.4 238 78.6
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 3.8e-89 332.0 242 76.9
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 4.9e-89 331.6 242 76.9
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 4.9e-89 331.6 209 81.8
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 4.9e-89 331.6 240 75.4
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 4.9e-89 331.6 240 75.0
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 6.4e-89 331.3 252 73.4
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 6.4e-89 331.3 240 76.2
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 1.1e-88 330.5 242 73.1
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 1.4e-88 330.1 240 78.3
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 1.4e-88 330.1 240 78.3
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 1.4e-88 330.1 240 76.7
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.4e-88 330.1 239 77.0
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 1.4e-88 330.1 244 73.8
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 1.9e-88 329.7 239 79.1
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.9e-88 329.7 240 75.0
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.9e-88 329.7 242 77.3
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 3.2e-88 328.9 240 77.5
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 3.2e-88 328.9 240 74.6
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 5.4e-88 328.2 242 76.0
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 5.4e-88 328.2 236 78.4
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 7.1e-88 327.8 236 78.4
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.1e-87 326.2 243 74.1
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 2.1e-87 326.2 238 78.2
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 3.5e-87 325.5 246 69.9
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 4.6e-87 325.1 238 77.7
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 6.0e-87 324.7 242 76.9
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 7.8e-87 324.3 242 69.8
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 1.0e-86 323.9 232 78.4
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 1.7e-86 323.2 228 80.3
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.7e-86 323.2 242 74.8
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 3.0e-86 322.4 240 75.4
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 3.0e-86 322.4 241 76.3
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 5.1e-86 321.6 243 73.7
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 8.7e-86 320.9 243 72.0
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 1.1e-85 320.5 232 72.8
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 1.9e-85 319.7 241 73.9
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 5.6e-85 318.2 242 74.4
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 7.3e-85 317.8 240 75.4
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 9.6e-85 317.4 242 74.0
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.6e-84 316.6 228 79.4
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 1.6e-84 316.6 240 69.2
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 2.8e-84 315.8 240 69.6
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 2.8e-84 315.8 242 74.8
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 4.8e-84 315.1 245 75.5
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 4.8e-84 315.1 243 73.7
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 1.8e-83 313.2 240 74.6
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 1.8e-83 313.2 240 75.0
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 5.3e-83 311.6 238 73.9
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 5.3e-83 311.6 205 78.5
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 6.9e-83 311.2 195 82.6
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 2.0e-82 309.7 196 83.2
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 2.0e-82 309.7 229 76.9
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 4.4e-82 308.5 240 67.5
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 4.4e-82 308.5 198 80.3
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 7.6e-82 307.8 242 71.9
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.7e-81 306.6 243 67.5
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 2.2e-81 306.2 204 79.4
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 3.8e-81 305.4 240 68.3
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 3.8e-81 305.4 199 79.4
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 6.4e-81 304.7 243 69.1
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 8.4e-81 304.3 244 67.6
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 8.4e-81 304.3 243 69.1
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 4.2e-80 302.0 242 72.7
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 9.3e-80 300.8 244 67.6
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 9.3e-80 300.8 244 67.2
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 1.2e-79 300.4 244 70.9
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 1.6e-79 300.1 205 76.1
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 3.5e-79 298.9 214 72.9
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 3.5e-79 298.9 243 71.6
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 6.0e-79 298.1 227 72.7
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 7.9e-79 297.7 244 66.4
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 1.3e-78 297.0 240 65.0
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 8.7e-78 294.3 244 66.8
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 9.6e-77 290.8 214 70.6
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 9.6e-77 290.8 214 70.6
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 2.1e-76 289.7 214 70.6
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 2.1e-76 289.7 214 70.6
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 3.6e-76 288.9 210 79.5
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 4.0e-75 285.4 244 68.0
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 6.9e-75 284.6 211 71.1
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 4.9e-73 278.5 240 67.9
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 2.4e-72 276.2 183 78.1
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 4.2e-72 275.4 243 65.0
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 3.0e-70 269.2 227 63.9
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 3.0e-70 269.2 236 59.3
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 8.1e-68 261.2 197 68.5
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.8e-67 260.0 178 75.3
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 9.3e-64 247.7 198 64.6
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 1.6e-60 236.9 212 65.1
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 7.6e-58 228.0 157 75.8
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 4.6e-55 218.8 191 61.8
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 2.3e-54 216.5 244 52.5
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 5.9e-50 201.8 170 67.1
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 3.3e-45 186.0 133 72.2
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 5.3e-43 178.7 111 79.3
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 5.9e-42 175.3 242 49.6
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 2.3e-38 163.3 176 50.0
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 2.0e-37 160.2 100 80.0
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 8.2e-36 154.8 173 48.6
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 4.7e-31 139.0 188 41.5
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 3.5e-26 122.9 130 54.6
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 6.1e-23 112.1 86 62.8
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 3.0e-22 109.8 90 78.9
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 4.1e-19 99.4 89 66.3
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 3.5e-18 96.3 183 32.2
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 7.2e-16 88.6 56 76.8
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 1.4e-14 84.3 213 28.2
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 9.2e-11 71.6 80 57.5
FAN20G1163 Fragaria x ananassa HOM05D001255 ORTHO05D006136 8.6e-09 65.1 82 51.2
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 6.1e-07 58.9 62 56.5
FAN23G2223 Fragaria x ananassa HOM05D001255 ORTHO05D006136 3.0e-06 56.6 55 58.2


User provided reference genes

Program Settings