Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G016770 Citrullus lanatus HOM05D002001 ORTHO05D006833 1.6e-64 249.2 120 100.0
MELO3C021825.2 Cucumis melo HOM05D002001 ORTHO05D006833 4.4e-38 161.4 76 97.4
CsaV3_2G036200 Cucumis sativus L. HOM05D002001 ORTHO05D006833 4.8e-37 157.9 76 96.1
Sed0002570 Sechium edule HOM05D002001 ORTHO05D006833 4.8e-37 157.9 76 94.7
Atru.chr11.917 Acer truncatum HOM05D002001 ORTHO05D006833 3.1e-36 155.2 76 92.1
Prupe.1G333600 Prunus persica HOM05D002001 ORTHO05D006833 7.0e-36 154.1 74 93.2
Eucgr.G02104 Eucalyptus grandis HOM05D002001 ORTHO05D006833 1.5e-35 152.9 76 89.5
Thecc.02G293000 Theobroma cacao HOM05D002001 ORTHO05D006833 2.0e-35 152.5 76 89.5
RcHm_v2.0_Chr3g0480131 Rosa chinensis HOM05D002001 ORTHO05D006833 2.6e-35 152.1 76 89.5
RcHm_v2.0_Chr4g0443031 Rosa chinensis HOM05D002001 ORTHO05D006833 2.6e-35 152.1 76 89.5
TAR374G1090 Trochodendron aralioides HOM05D002001 ORTHO05D006833 3.5e-35 151.8 76 89.5
COL.COLO4_16597 Corchorus olitorius HOM05D002001 ORTHO05D006833 4.5e-35 151.4 75 89.3
MD16G1018300 Malus domestica HOM05D002001 ORTHO05D006833 4.5e-35 151.4 74 91.9
Manes.17G084001 Manihot esculenta HOM05D002001 ORTHO05D006833 4.5e-35 151.4 76 89.5
Nn4g24394 Nelumbo nucifera HOM05D002001 ORTHO05D006833 4.5e-35 151.4 76 88.2
TWI74G1639 Tripterygium wilfordii HOM05D002001 ORTHO05D006833 4.5e-35 151.4 73 93.2
Hma1.2p1_0277F.1_g111670 Hydrangea macrophylla HOM05D002001 ORTHO05D006833 7.7e-35 150.6 76 88.2
Lsat_1_v5_gn_3_53521 Lactuca sativa HOM05D002001 ORTHO05D006833 2.2e-34 149.1 76 85.5
Potri.010G106200 Populus trichocarpa HOM05D002001 ORTHO05D006833 2.2e-34 149.1 76 86.8
Duzib251G0919 Durio zibethinus HOM05D002001 ORTHO05D006833 2.9e-34 148.7 76 86.8
Cpa.g.sc2.191 Carica papaya HOM05D002001 ORTHO05D006833 5.0e-34 147.9 76 85.5
Sabra10G0077600 Salix brachista HOM05D002001 ORTHO05D006833 6.5e-34 147.5 76 86.8
CiPaw.06G052200 Carya illinoinensis HOM05D002001 ORTHO05D006833 8.5e-34 147.1 76 86.8
CDE04G3481 Ceratophyllum demersum HOM05D002001 ORTHO05D006833 8.5e-34 147.1 76 86.8
FvH4_4g33520 Fragaria vesca HOM05D002001 ORTHO05D006833 8.5e-34 147.1 76 86.8
FAN12G2518 Fragaria x ananassa HOM05D001103 ORTHO05D006833 8.5e-34 147.1 76 86.8
FAN22G0254 Fragaria x ananassa HOM05D001103 ORTHO05D006833 8.5e-34 147.1 76 86.8
Haze_10877 Corylus avellana HOM05D002001 ORTHO05D006833 1.4e-33 146.4 76 85.5
PGR142G4413 Punica granatum HOM05D002001 ORTHO05D006833 1.4e-33 146.4 76 88.2
SHI04310 Sapria himalayana HOM05D002001 ORTHO05D006833 2.5e-33 145.6 76 84.2
FAN17G2388 Fragaria x ananassa HOM05D002001 ORTHO05D006833 3.2e-33 145.2 76 85.5
Gohir.A04G142900 Gossypium hirsutum HOM05D002001 ORTHO05D006833 4.2e-33 144.8 76 85.5
Gohir.D04G186200 Gossypium hirsutum HOM05D002001 ORTHO05D006833 4.2e-33 144.8 76 85.5
Gorai.012G182600 Gossypium raimondii HOM05D002001 ORTHO05D006833 4.2e-33 144.8 76 85.5
Hund02009 Selenicereus undatus HOM05D002001 ORTHO05D006833 5.5e-33 144.4 78 83.3
Actinidia36625 Actinidia chinensis HOM05D002001 ORTHO05D006833 9.4e-33 143.7 76 84.2
FAN07G1867 Fragaria x ananassa HOM05D002001 ORTHO05D006833 1.2e-32 143.3 88 73.9
THA.LOC104805082 Tarenaya hassleriana HOM05D002001 ORTHO05D006833 1.6e-32 142.9 76 85.5
GSVIVG01011657001 Vitis vinifera HOM05D002001 ORTHO05D006833 1.6e-32 142.9 75 84.0
Hund24272 Selenicereus undatus HOM05D002001 ORTHO05D006833 2.1e-32 142.5 84 78.6
Psat6g046600 Pisum sativum HOM05D002001 ORTHO05D006833 2.7e-32 142.1 76 81.6
Lj1g0014242 Lotus japonicus HOM05D002001 ORTHO05D006833 3.6e-32 141.7 76 82.9
Lj5g0002389 Lotus japonicus HOM05D002001 ORTHO05D006833 3.6e-32 141.7 76 82.9
Os09g0397900 Oryza sativa ssp. japonica HOM05D002001 ORTHO05D006833 3.6e-32 141.7 73 84.9
EL10Ac4g08758 Beta vulgaris HOM05D002001 ORTHO05D006833 4.7e-32 141.4 76 85.5
MBI19_g08381_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D006833 8.0e-32 140.6 76 78.9
TPR.G36871 Trifolium pratense HOM05D002001 ORTHO05D006833 8.0e-32 140.6 76 81.6
Aqoxy3G02830 Aquilegia oxysepala HOM05D002001 ORTHO05D006833 1.4e-31 139.8 76 77.6
MBI19_g34072_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D006833 2.3e-31 139.0 76 77.6
Medtr1g032500 Medicago truncatula HOM05D002001 ORTHO05D006833 2.3e-31 139.0 76 77.6
PSO017G4060 Papaver somniferum HOM05D002001 ORTHO05D006833 2.3e-31 139.0 88 75.0
Aqoxy1G03746 Aquilegia oxysepala HOM05D002001 ORTHO05D006833 3.0e-31 138.7 76 76.3
ECA246G3445 Erigeron canadensis HOM05D002001 ORTHO05D006833 8.8e-31 137.1 78 80.8
Lj2g0009645 Lotus japonicus HOM05D002001 ORTHO05D006833 8.8e-31 137.1 76 80.3
Sc04g0007250 Simmondsia chinensis HOM05D002001 ORTHO05D006833 8.8e-31 137.1 73 83.6
HPP92_024776 Vanilla planifolia HOM05D001290 ORTHO05D006833 8.8e-31 137.1 73 82.2
Rhsim09G0089400 Rhododendron simsii HOM05D002001 ORTHO05D006833 1.1e-30 136.7 76 78.9
VMungo0720G0546 Vigna mungo HOM05D002001 ORTHO05D006833 1.1e-30 136.7 76 81.6
Phvul.003G018200 Phaseolus vulgaris HOM05D002001 ORTHO05D006833 1.5e-30 136.3 76 81.6
vmacro10695 Vaccinium macrocarpon HOM05D002001 ORTHO05D006833 1.5e-30 136.3 103 67.0
HanXRQChr17g0534331 Helianthus annuus HOM05D002001 ORTHO05D006833 5.7e-30 134.4 76 80.3
Cc11_g07310 Coffea canephora HOM05D002001 ORTHO05D006833 7.4e-30 134.0 77 76.6
Nitab4.5_0002414g0090 Nicotiana tabacum HOM05D002001 ORTHO05D006833 7.4e-30 134.0 77 79.2
Peaxi162Scf00337g00816 Petunia axillaris HOM05D002001 ORTHO05D006833 1.3e-29 133.3 77 77.9
CANSAT01G0386 Cannabis sativa HOM05D002001 ORTHO05D006833 1.7e-29 132.9 76 78.9
Nitab4.5_0002803g0040 Nicotiana tabacum HOM05D002001 ORTHO05D006833 1.7e-29 132.9 77 79.2
Glyma.02G085400 Glycine max HOM05D002001 ORTHO05D006833 2.2e-29 132.5 76 77.6
Lalb_Chr10g0095701 Lupinus albus HOM05D002001 ORTHO05D006833 3.7e-29 131.7 76 77.6
Ca_12539_v3 Cicer arietinum L. HOM05D002001 ORTHO05D006833 4.8e-29 131.3 69 85.5
MSTRG.8103 Avicennia marina HOM05D002001 ORTHO05D006833 1.8e-28 129.4 77 76.6
SEGI_40984 Sequoiadendron giganteum HOM05D002001 ORTHO05D006833 3.1e-28 128.6 76 73.7
Ciclev10014563m.g Citrus clementina HOM05D002001 ORTHO05D006833 4.1e-28 128.3 103 61.2
AL5G10820 Arabidopsis lyrata HOM05D002001 ORTHO05D006833 5.3e-28 127.9 76 73.7
BcaB07g30376 Brassica carinata HOM05D002001 ORTHO05D006833 5.3e-28 127.9 76 73.7
BcaC03g17071 Brassica carinata HOM05D002001 ORTHO05D006833 5.3e-28 127.9 76 73.7
A02p32290 Brassica napus HOM05D002001 ORTHO05D006833 5.3e-28 127.9 76 73.7
C02p49890 Brassica napus HOM05D002001 ORTHO05D006833 5.3e-28 127.9 76 73.7
BolC2t11068H Brassica oleracea HOM05D002001 ORTHO05D006833 5.3e-28 127.9 76 73.7
BraA02t08246Z Brassica rapa HOM05D002001 ORTHO05D006833 5.3e-28 127.9 76 73.7
CARHR144290 Cardamine hirsuta HOM05D002001 ORTHO05D006833 5.3e-28 127.9 76 73.7
Thhalv10005303m.g Eutrema salsugineum HOM05D002001 ORTHO05D006833 5.3e-28 127.9 76 73.7
Sp2g13180 Schrenkiella parvula HOM05D002001 ORTHO05D006833 5.3e-28 127.9 76 73.7
CAN.G74.9 Capsicum annuum HOM05D002001 ORTHO05D006833 9.1e-28 127.1 77 75.3
AT2G01730 Arabidopsis thaliana HOM05D002001 ORTHO05D006833 1.2e-27 126.7 76 72.4
Carub.0005s0067 Capsella rubella HOM05D002001 ORTHO05D006833 1.2e-27 126.7 76 72.4
Solyc04g008030.2 Solanum lycopersicum HOM05D002001 ORTHO05D006833 1.2e-27 126.7 77 74.0
Sopen04g003170 Solanum pennellii HOM05D002001 ORTHO05D006833 1.2e-27 126.7 77 74.0
Zm00001eb159740 Zea mays HOM05D002001 ORTHO05D006833 1.6e-27 126.3 73 75.3
ATR0753G129 Amborella trichopoda HOM05D002001 ORTHO05D006833 2.5e-25 119.0 73 75.3
arahy.Tifrunner.gnm1.ann1.DJZM3B Arachis hypogaea HOM05D002001 ORTHO05D006833 7.2e-25 117.5 80 67.5
PGSC0003DMG400029468 Solanum tuberosum HOM05D002001 ORTHO05D006833 7.2e-25 117.5 70 75.7
Aa31LG2G8170 Aethionema arabicum HOM05D002001 ORTHO05D006833 9.4e-25 117.1 89 61.8
unitig_46.g18398 Utricularia gibba HOM05D002001 ORTHO05D006833 9.4e-25 117.1 77 72.7
arahy.Tifrunner.gnm1.ann1.0HZN60 Arachis hypogaea HOM05D002001 ORTHO05D006833 1.2e-24 116.7 76 68.4
CBR_g20441 Chara braunii HOM05D002001 ORTHO05D006833 2.1e-24 115.9 88 59.1
AUR62010473 Chenopodium quinoa HOM05D002001 ORTHO05D006833 2.7e-24 115.5 77 71.4
SMO139G0046 Selaginella moellendorffii HOM05D002001 ORTHO05D006833 8.0e-24 114.0 73 61.6
Migut.F01878 Erythranthe guttata HOM05D002001 ORTHO05D006833 1.7e-21 106.3 77 67.5
DCAR_026803 Daucus carota HOM05D002001 ORTHO05D006833 4.8e-21 104.8 76 63.2
Pp3c5_16690 Physcomitrium patens HOM05D002001 ORTHO05D006833 4.1e-20 101.7 73 64.4
Oeu062634.1 Olea europaea HOM05D002001 ORTHO05D006833 1.3e-18 96.7 55 81.8
Oeu062636.1 Olea europaea HOM05D002001 ORTHO05D006833 1.3e-18 96.7 55 81.8
CSS0027933 Camellia sinensis var. sinensis HOM05D002001 ORTHO05D006833 1.1e-17 93.6 49 81.6
Haze_26947 Corylus avellana HOM05D002001 ORTHO05D006833 7.2e-17 90.9 62 54.8
Lj6A737G48 Lonicera japonica HOM05D002001 ORTHO05D006833 1.2e-16 90.1 48 81.2
Mapoly0023s0072 Marchantia polymorpha HOM05D002001 ORTHO05D006833 2.7e-16 89.0 55 63.6
Dinv10473 Davidia involucrata HOM05D002001 ORTHO05D006833 4.1e-12 75.1 36 88.9
Cre02.g080100 Chlamydomonas reinhardtii HOM05D002001 ORTHO05D006833 1.2e-11 73.6 56 57.1
Haze_26930 Corylus avellana HOM05D002001 ORTHO05D004100 2.3e-07 59.3 74 39.2
CBR_g31441 Chara braunii HOM05D002001 ORTHO05D004100 8.9e-07 57.4 51 43.1
Cfa023215 Carpinus fangiana HOM05D002001 ORTHO05D004100 1.5e-06 56.6 61 39.3
Lalb_Chr20g0123631 Lupinus albus HOM05D002001 ORTHO05D004100 1.5e-06 56.6 59 40.7
CSS0031775 Camellia sinensis var. sinensis HOM05D002001 ORTHO05D006833 7.5e-06 54.3 34 64.7


User provided reference genes

Program Settings