Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G016760 Citrullus lanatus HOM05D002001 ORTHO05D006833 2.4e-140 502.3 278 100.0
MELO3C021825.2 Cucumis melo HOM05D002001 ORTHO05D006833 5.2e-119 431.4 282 87.9
CsaV3_2G036200 Cucumis sativus L. HOM05D002001 ORTHO05D006833 6.6e-114 414.5 279 83.5
Sed0002570 Sechium edule HOM05D002001 ORTHO05D006833 9.3e-100 367.5 285 80.4
Haze_10877 Corylus avellana HOM05D002001 ORTHO05D006833 1.0e-69 267.7 302 50.7
Thecc.02G293000 Theobroma cacao HOM05D002001 ORTHO05D006833 2.9e-69 266.2 282 52.1
CSS0024108 Camellia sinensis var. sinensis HOM05D002001 ORTHO05D006833 3.6e-67 259.2 282 50.0
Duzib251G0919 Durio zibethinus HOM05D002001 ORTHO05D006833 4.6e-67 258.8 288 50.0
CiPaw.06G052200 Carya illinoinensis HOM05D002001 ORTHO05D006833 6.1e-67 258.5 284 49.6
Gohir.A04G142900 Gossypium hirsutum HOM05D002001 ORTHO05D006833 1.5e-65 253.8 279 50.9
TWI74G1639 Tripterygium wilfordii HOM05D002001 ORTHO05D006833 2.0e-65 253.4 283 49.8
Prupe.1G333600 Prunus persica HOM05D002001 ORTHO05D006833 1.3e-64 250.8 281 51.6
COL.COLO4_16597 Corchorus olitorius HOM05D002001 ORTHO05D006833 1.7e-64 250.4 278 50.4
Atru.chr11.917 Acer truncatum HOM05D002001 ORTHO05D006833 2.2e-64 250.0 282 47.9
Gohir.D04G186200 Gossypium hirsutum HOM05D002001 ORTHO05D006833 2.2e-64 250.0 279 50.2
Gorai.012G182600 Gossypium raimondii HOM05D002001 ORTHO05D006833 2.8e-64 249.6 279 50.2
Cpa.g.sc2.191 Carica papaya HOM05D002001 ORTHO05D006833 6.3e-64 248.4 285 48.1
Lj6A737G49 Lonicera japonica HOM05D002001 ORTHO05D006833 8.2e-64 248.1 277 50.2
RcHm_v2.0_Chr3g0480131 Rosa chinensis HOM05D002001 ORTHO05D006833 1.8e-63 246.9 277 50.9
Ciclev10014563m.g Citrus clementina HOM05D002001 ORTHO05D006833 2.4e-63 246.5 286 49.3
Actinidia36625 Actinidia chinensis HOM05D002001 ORTHO05D006833 3.1e-63 246.1 277 46.6
TAR374G1090 Trochodendron aralioides HOM05D002001 ORTHO05D006833 6.9e-63 245.0 292 45.9
FAN17G2388 Fragaria x ananassa HOM05D002001 ORTHO05D006833 3.4e-62 242.7 273 50.2
MD16G1018300 Malus domestica HOM05D002001 ORTHO05D006833 3.4e-62 242.7 285 49.8
FAN07G1867 Fragaria x ananassa HOM05D002001 ORTHO05D006833 4.5e-62 242.3 272 50.4
RcHm_v2.0_Chr4g0443031 Rosa chinensis HOM05D002001 ORTHO05D006833 4.5e-62 242.3 281 49.8
Manes.17G084001 Manihot esculenta HOM05D002001 ORTHO05D006833 7.7e-62 241.5 261 50.6
FAN12G2518 Fragaria x ananassa HOM05D001103 ORTHO05D006833 1.7e-61 240.4 275 49.1
FAN22G0254 Fragaria x ananassa HOM05D001103 ORTHO05D006833 1.7e-61 240.4 275 49.1
FvH4_4g33520 Fragaria vesca HOM05D002001 ORTHO05D006833 5.0e-61 238.8 275 48.7
Hma1.2p1_0277F.1_g111670 Hydrangea macrophylla HOM05D002001 ORTHO05D006833 6.5e-61 238.4 274 47.8
Potri.010G106200 Populus trichocarpa HOM05D002001 ORTHO05D006833 8.5e-61 238.0 277 46.9
Sabra10G0077600 Salix brachista HOM05D002001 ORTHO05D006833 6.1e-59 231.9 277 46.6
CANSAT01G0386 Cannabis sativa HOM05D002001 ORTHO05D006833 1.0e-58 231.1 275 46.9
Eucgr.G02104 Eucalyptus grandis HOM05D002001 ORTHO05D006833 2.6e-57 226.5 281 45.2
GSVIVG01011657001 Vitis vinifera HOM05D002001 ORTHO05D006833 7.4e-57 224.9 274 47.8
PGR142G4413 Punica granatum HOM05D002001 ORTHO05D006833 2.8e-56 223.0 281 42.7
vmacro10695 Vaccinium macrocarpon HOM05D002001 ORTHO05D006833 3.7e-56 222.6 279 45.2
Rhsim09G0089400 Rhododendron simsii HOM05D002001 ORTHO05D006833 6.3e-56 221.9 272 46.7
Oeu062636.1 Olea europaea HOM05D002001 ORTHO05D006833 7.0e-55 218.4 272 45.6
Oeu062634.1 Olea europaea HOM05D002001 ORTHO05D006833 2.0e-54 216.9 275 44.0
Sc04g0007240 Simmondsia chinensis HOM05D002001 ORTHO05D006833 4.5e-54 215.7 276 42.8
Nitab4.5_0002803g0040 Nicotiana tabacum HOM05D002001 ORTHO05D006833 8.5e-53 211.5 280 43.6
Nitab4.5_0002414g0090 Nicotiana tabacum HOM05D002001 ORTHO05D006833 9.4e-52 208.0 280 42.5
DCAR_026803 Daucus carota HOM05D002001 ORTHO05D006833 2.1e-51 206.8 281 44.1
PGSC0003DMG400029468 Solanum tuberosum HOM05D002001 ORTHO05D006833 9.7e-49 198.0 281 42.3
Peaxi162Scf00337g00816 Petunia axillaris HOM05D002001 ORTHO05D006833 1.7e-48 197.2 290 40.0
Cc11_g07310 Coffea canephora HOM05D002001 ORTHO05D006833 3.7e-48 196.1 276 41.3
Migut.F01878 Erythranthe guttata HOM05D002001 ORTHO05D006833 3.1e-47 193.0 271 41.3
Nn4g24394 Nelumbo nucifera HOM05D002001 ORTHO05D006833 7.0e-47 191.8 310 37.7
CAN.G74.9 Capsicum annuum HOM05D002001 ORTHO05D006833 7.7e-46 188.3 281 40.6
Lsat_1_v5_gn_3_53521 Lactuca sativa HOM05D002001 ORTHO05D006833 1.7e-45 187.2 276 39.1
Solyc04g008030.2 Solanum lycopersicum HOM05D002001 ORTHO05D006833 1.7e-45 187.2 280 40.4
Sopen04g003170 Solanum pennellii HOM05D002001 ORTHO05D006833 1.7e-45 187.2 280 40.4
SHI04310 Sapria himalayana HOM05D002001 ORTHO05D006833 6.5e-45 185.3 279 38.0
MSTRG.8103 Avicennia marina HOM05D002001 ORTHO05D006833 1.9e-44 183.7 272 42.6
ECA246G3445 Erigeron canadensis HOM05D002001 ORTHO05D006833 9.4e-44 181.4 276 40.6
THA.LOC104805082 Tarenaya hassleriana HOM05D002001 ORTHO05D006833 1.6e-43 180.6 273 39.9
PSO017G4060 Papaver somniferum HOM05D002001 ORTHO05D006833 1.0e-42 177.9 315 37.1
Carub.0005s0067 Capsella rubella HOM05D002001 ORTHO05D006833 4.0e-42 176.0 270 40.0
Aa31LG2G8170 Aethionema arabicum HOM05D002001 ORTHO05D006833 6.8e-42 175.3 272 38.2
CARHR144290 Cardamine hirsuta HOM05D002001 ORTHO05D006833 6.8e-42 175.3 273 39.2
Nn4g24387 Nelumbo nucifera HOM05D002001 ORTHO05D006833 8.8e-42 174.9 287 36.9
Thhalv10005303m.g Eutrema salsugineum HOM05D002001 ORTHO05D006833 1.2e-41 174.5 272 37.9
Sp2g13180 Schrenkiella parvula HOM05D002001 ORTHO05D006833 7.5e-41 171.8 275 37.5
AT2G01730 Arabidopsis thaliana HOM05D002001 ORTHO05D006833 1.3e-40 171.0 270 38.1
AL5G10820 Arabidopsis lyrata HOM05D002001 ORTHO05D006833 2.2e-40 170.2 273 37.4
BcaB07g30376 Brassica carinata HOM05D002001 ORTHO05D006833 6.3e-40 168.7 274 37.6
A02p32290 Brassica napus HOM05D002001 ORTHO05D006833 1.1e-39 167.9 275 38.2
BraA02t08246Z Brassica rapa HOM05D002001 ORTHO05D006833 1.1e-39 167.9 275 38.2
BcaC03g17071 Brassica carinata HOM05D002001 ORTHO05D006833 1.2e-38 164.5 275 37.8
C02p49890 Brassica napus HOM05D002001 ORTHO05D006833 1.2e-38 164.5 275 37.8
BolC2t11068H Brassica oleracea HOM05D002001 ORTHO05D006833 1.2e-38 164.5 275 37.8
HanXRQChr17g0534331 Helianthus annuus HOM05D002001 ORTHO05D006833 3.5e-38 162.9 273 37.0
TPR.G36871 Trifolium pratense HOM05D002001 ORTHO05D006833 5.0e-37 159.1 166 54.8
Lj5g0002389 Lotus japonicus HOM05D002001 ORTHO05D006833 1.6e-35 154.1 168 67.3
VMungo0720G0546 Vigna mungo HOM05D002001 ORTHO05D006833 2.1e-35 153.7 165 52.7
Psat6g046600 Pisum sativum HOM05D002001 ORTHO05D006833 2.7e-35 153.3 165 52.7
Lj2g0009645 Lotus japonicus HOM05D002001 ORTHO05D006833 4.7e-35 152.5 168 66.7
Lalb_Chr10g0095701 Lupinus albus HOM05D002001 ORTHO05D006833 6.1e-35 152.1 162 51.2
Lj1g0014242 Lotus japonicus HOM05D002001 ORTHO05D006833 8.0e-35 151.8 168 67.3
Glyma.02G085400 Glycine max HOM05D002001 ORTHO05D006833 3.0e-34 149.8 165 52.1
Ca_12539_v3 Cicer arietinum L. HOM05D002001 ORTHO05D006833 4.0e-34 149.4 166 51.2
Phvul.003G018200 Phaseolus vulgaris HOM05D002001 ORTHO05D006833 4.0e-34 149.4 165 51.5
HPP92_024776 Vanilla planifolia HOM05D001290 ORTHO05D006833 1.3e-32 144.4 276 34.4
Medtr1g032500 Medicago truncatula HOM05D002001 ORTHO05D006833 3.7e-32 142.9 168 50.0
Dinv10473 Davidia involucrata HOM05D002001 ORTHO05D006833 3.1e-31 139.8 165 50.3
Hund02009 Selenicereus undatus HOM05D002001 ORTHO05D006833 1.7e-29 134.0 163 49.7
Hund02008 Selenicereus undatus HOM05D002001 ORTHO05D006833 2.9e-29 133.3 163 49.7
ATR0753G129 Amborella trichopoda HOM05D002001 ORTHO05D006833 8.6e-29 131.7 359 28.7
Aqoxy3G02830 Aquilegia oxysepala HOM05D002001 ORTHO05D006833 1.5e-28 131.0 171 44.4
Aqoxy1G03746 Aquilegia oxysepala HOM05D002001 ORTHO05D006833 1.9e-28 130.6 171 44.4
arahy.Tifrunner.gnm1.ann1.0HZN60 Arachis hypogaea HOM05D002001 ORTHO05D006833 1.9e-28 130.6 165 46.7
arahy.Tifrunner.gnm1.ann1.DJZM3B Arachis hypogaea HOM05D002001 ORTHO05D006833 1.2e-27 127.9 173 44.5
EL10Ac4g08758 Beta vulgaris HOM05D002001 ORTHO05D006833 4.0e-26 122.9 154 46.1
AUR62030423 Chenopodium quinoa HOM05D002001 ORTHO05D006833 8.9e-26 121.7 154 46.8
AUR62010473 Chenopodium quinoa HOM05D002001 ORTHO05D006833 2.0e-25 120.6 154 47.4
Actinidia12396 Actinidia chinensis HOM05D002001 ORTHO05D006833 2.8e-24 116.7 148 43.2
CDE04G3481 Ceratophyllum demersum HOM05D002001 ORTHO05D006833 3.7e-24 116.3 174 39.1
SEGI_18225 Sequoiadendron giganteum HOM05D002001 ORTHO05D006833 3.7e-24 116.3 193 36.3
SEGI_40984 Sequoiadendron giganteum HOM05D002001 ORTHO05D006833 3.7e-24 116.3 193 36.3
MBI19_g08382_MAGBIO Magnolia biondii HOM05D007545 ORTHO05D009579 2.1e-19 100.5 158 33.5
Os09g0397900 Oryza sativa ssp. japonica HOM05D002001 ORTHO05D006833 4.0e-18 96.3 186 39.8
Mapoly0023s0072 Marchantia polymorpha HOM05D002001 ORTHO05D006833 1.9e-15 87.4 174 33.9
Pp3c5_16690 Physcomitrium patens HOM05D002001 ORTHO05D006833 9.2e-15 85.1 180 31.7
SMO139G0046 Selaginella moellendorffii HOM05D002001 ORTHO05D006833 1.1e-12 78.2 170 30.0
Hund24272 Selenicereus undatus HOM05D002001 ORTHO05D006833 1.2e-11 74.7 44 79.5
RcHm_v2.0_Chr2g0101461 Rosa chinensis HOM05D002001 ORTHO05D006833 1.4e-10 71.2 73 56.2
RcHm_v2.0_Chr6g0263901 Rosa chinensis HOM05D002001 ORTHO05D006833 1.4e-10 71.2 73 56.2
CBR_g20441 Chara braunii HOM05D002001 ORTHO05D006833 2.1e-06 57.4 57 45.6


User provided reference genes

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