Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 2.8e-140 501.9 246 100.0
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 2.4e-131 472.2 246 93.1
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 5.5e-128 461.1 246 89.4
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 1.5e-122 443.0 229 93.9
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 1.3e-118 429.9 242 85.1
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 5.7e-117 424.5 246 83.7
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 2.1e-116 422.5 246 84.6
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 2.8e-116 422.2 247 81.4
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 3.7e-116 421.8 242 83.9
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 3.7e-116 421.8 246 83.7
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 1.1e-115 420.2 246 81.3
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 1.2e-114 416.8 246 80.1
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 4.5e-114 414.8 246 80.9
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 5.9e-114 414.5 242 82.2
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 1.0e-113 413.7 246 79.7
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.0e-113 413.7 246 79.7
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 2.2e-113 412.5 242 81.0
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 2.2e-113 412.5 246 79.7
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 2.2e-113 412.5 246 81.3
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 6.5e-113 411.0 246 78.5
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 2.5e-112 409.1 242 80.2
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 2.5e-112 409.1 236 81.4
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 2.5e-112 409.1 246 80.9
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 2.5e-112 409.1 242 79.8
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 3.2e-112 408.7 242 81.8
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 3.2e-112 408.7 246 79.7
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 7.2e-112 407.5 242 78.1
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 1.2e-111 406.8 246 79.3
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 1.6e-111 406.4 246 78.0
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 3.5e-111 405.2 246 78.5
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 4.6e-111 404.8 242 76.4
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 1.0e-110 403.7 259 75.3
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 1.8e-110 402.9 242 77.3
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 3.9e-110 401.7 242 77.7
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 1.5e-109 399.8 246 77.6
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 1.5e-109 399.8 246 78.5
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 1.9e-109 399.4 242 77.7
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 7.4e-109 397.5 246 78.5
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 9.7e-109 397.1 246 77.6
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.3e-108 396.7 246 77.6
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 2.2e-108 396.0 231 81.0
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 2.8e-108 395.6 242 76.0
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 3.7e-108 395.2 246 76.8
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 1.4e-107 393.3 229 82.1
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 1.4e-107 393.3 246 76.4
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 1.8e-107 392.9 246 76.4
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 1.8e-107 392.9 242 76.9
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 2.4e-107 392.5 230 81.7
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 5.3e-107 391.3 246 77.2
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 5.3e-107 391.3 243 77.4
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 5.3e-107 391.3 247 76.5
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 9.0e-107 390.6 246 75.6
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 9.0e-107 390.6 243 77.4
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 1.2e-106 390.2 243 77.0
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 2.0e-106 389.4 246 74.0
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 2.0e-106 389.4 246 75.6
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 2.6e-106 389.0 246 76.0
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 2.6e-106 389.0 247 75.7
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 4.5e-106 388.3 246 75.6
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 4.5e-106 388.3 246 75.2
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 4.5e-106 388.3 273 70.3
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 7.7e-106 387.5 246 74.4
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 1.0e-105 387.1 243 76.1
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 2.2e-105 386.0 242 75.2
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 2.2e-105 386.0 246 74.8
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 2.9e-105 385.6 246 75.2
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 3.8e-105 385.2 246 74.0
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 6.5e-105 384.4 283 67.8
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 1.1e-104 383.6 239 77.0
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 3.2e-104 382.1 246 74.0
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 3.2e-104 382.1 246 74.8
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 4.2e-104 381.7 242 73.1
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 4.2e-104 381.7 246 72.8
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 2.1e-103 379.4 294 65.0
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 2.7e-103 379.0 247 73.7
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 3.6e-103 378.6 242 74.8
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 1.4e-102 376.7 236 72.0
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 1.4e-102 376.7 246 73.2
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 2.3e-102 375.9 240 73.8
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 3.0e-102 375.6 247 72.9
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 3.9e-102 375.2 243 72.4
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 5.1e-102 374.8 243 72.0
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 5.1e-102 374.8 278 67.6
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 1.5e-101 373.2 242 72.7
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 3.3e-101 372.1 242 72.7
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 4.8e-100 368.2 212 80.7
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 6.3e-100 367.9 254 70.1
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 7.7e-98 360.9 241 71.8
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 2.9e-97 359.0 246 72.0
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 5.5e-96 354.8 330 57.9
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 7.9e-95 350.9 212 78.3
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 3.1e-91 339.0 233 69.1
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 1.3e-89 333.6 205 77.1
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 1.2e-87 327.0 205 76.6
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 1.2e-87 327.0 256 59.4
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 2.1e-87 326.2 283 56.5
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 4.7e-87 325.1 209 74.2
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 3.1e-83 312.4 255 56.5
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 5.3e-83 311.6 214 74.3
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.3e-81 307.0 301 55.8
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 9.4e-80 300.8 242 63.6
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 2.1e-79 299.7 242 61.2
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 1.2e-69 267.3 321 44.9
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 2.9e-65 252.7 264 49.6
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 8.0e-63 244.6 250 51.2
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 3.9e-57 225.7 248 48.8
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 9.5e-56 221.1 342 43.6
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 1.4e-54 217.2 253 43.1
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 2.3e-54 216.5 251 45.8
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 2.2e-52 209.9 148 71.6
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 1.7e-49 200.3 108 80.6
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.5e-48 197.2 123 80.5
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 3.9e-41 172.6 123 66.7
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 3.4e-37 159.5 83 81.9
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 2.3e-33 146.7 97 74.2
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 6.6e-25 118.6 83 67.5
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 6.6e-25 118.6 83 67.5
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 9.6e-24 114.8 59 83.1
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 5.3e-22 109.0 74 68.9
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 1.1e-19 101.3 95 58.9
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 8.7e-17 91.7 64 68.8
A01p41990 Brassica napus HOM05D005979 ORTHO05D041676 1.8e-14 84.0 122 42.6
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 4.0e-14 82.8 51 72.5
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 2.0e-13 80.5 51 70.6
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 2.0e-13 80.5 51 70.6
BolC1t05773H Brassica oleracea HOM05D005979 ORTHO05D007848 3.5e-10 69.7 43 69.8
CBR_g27740 Chara braunii HOM05D000738 ORTHO05D000675 2.3e-09 67.0 101 35.6
BraA01t04267Z Brassica rapa HOM05D005979 ORTHO05D041676 2.5e-08 63.5 37 70.3
BcaC09g47773 Brassica carinata HOM05D005979 ORTHO05D007848 1.6e-07 60.8 38 68.4
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 1.6e-07 60.8 94 38.3
PRCOL_00006618 Prasinoderma coloniale HOM05D000738 ORTHO05D000675 2.8e-07 60.1 68 39.7
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 6.2e-07 58.9 77 39.0
Cfa025444 Carpinus fangiana HOM05D005979 ORTHO05D122864 8.1e-07 58.5 78 38.5
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 2.4e-06 57.0 77 40.3
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 3.1e-06 56.6 101 35.6
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 4.0e-06 56.2 88 37.5
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 4.0e-06 56.2 76 38.2
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 4.0e-06 56.2 73 37.0
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 5.3e-06 55.8 75 36.0
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 6.9e-06 55.5 58 44.8


User provided reference genes

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