Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 4780.3 2450 100.0
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 4217.9 2443 88.9
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 4212.1 2443 88.9
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 3870.9 2456 81.7
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 2317.0 2590 51.1
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 2233.0 2587 49.6
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 2209.5 2587 49.2
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 2201.4 2589 49.2
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 2187.5 2602 49.4
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 2186.0 2595 48.7
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 2178.7 2594 49.1
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2161.3 2599 48.1
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2155.6 2599 47.7
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 2116.3 2601 47.4
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 2092.8 2585 47.9
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 2069.3 2595 47.1
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 2064.3 2617 46.8
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 2058.1 2589 47.0
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 2049.6 2598 46.5
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 2031.1 2590 46.3
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 1996.9 2594 46.6
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1992.6 2587 45.8
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1973.7 2589 45.7
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 1952.9 2588 45.2
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 1941.0 2593 45.3
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 1911.7 2573 45.3
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1910.6 2512 45.3
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1897.5 2618 43.8
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 1890.2 2597 44.6
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 1878.6 2699 43.4
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1870.5 2594 43.7
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 1867.8 2607 44.0
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1865.5 2635 43.5
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1859.7 2567 44.0
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 1844.3 2227 47.6
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1841.2 2592 43.2
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 1840.5 2594 44.3
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 1835.5 2554 44.0
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1814.3 2563 43.9
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 1788.5 2582 42.3
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1780.4 2573 42.6
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 1779.6 2585 43.4
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1763.0 2583 42.1
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1755.7 2375 44.3
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 1744.2 2565 41.6
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1739.2 2438 44.2
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 1724.1 2585 41.4
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 1692.2 2568 41.0
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1686.0 2638 41.1
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 1670.6 2597 40.8
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1670.2 2599 41.2
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1669.1 2470 42.2
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 1664.0 2602 41.5
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1662.1 2647 40.5
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1656.3 2583 40.2
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1647.5 2524 41.8
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1640.6 2586 40.8
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1637.5 2581 40.3
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1635.2 2667 39.1
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1630.9 2589 40.6
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1630.9 2638 39.4
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1627.5 2614 40.4
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1625.9 2517 41.5
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1614.0 2423 42.1
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1589.3 2628 39.6
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1584.7 2649 39.3
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1579.7 2647 39.1
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1578.9 2613 39.8
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1523.5 2507 40.5
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1508.8 2659 38.5
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1483.8 1781 48.3
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1479.2 2482 38.4
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1471.1 2134 43.0
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1461.4 2635 38.9
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1447.6 2633 38.2
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1441.8 2438 39.0
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 1436.0 2667 38.1
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1433.7 2666 37.8
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1417.5 2489 38.7
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1376.3 2215 40.4
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1373.6 2534 37.8
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1362.1 2334 37.8
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1355.5 2641 35.6
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1305.0 2569 36.9
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1299.3 2023 40.5
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1290.0 2036 39.5
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1272.3 2583 36.0
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1271.1 2574 35.4
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1234.2 2328 36.2
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1214.9 2227 37.4
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 1202.6 2024 38.1
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1177.9 1591 43.9
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 0.0e+00 1136.3 2095 38.2
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 0.0e+00 1088.2 2389 34.9
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 1.7e-311 1074.3 2193 35.9
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 9.8e-286 988.4 1787 38.9
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 7.5e-270 935.6 1694 37.4
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 5.5e-228 796.6 911 51.0
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 6.5e-221 773.1 772 56.1
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 1.7e-205 721.8 2740 26.7
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 2.6e-198 698.0 2431 27.5
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 8.5e-197 693.0 815 48.8
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 3.6e-179 634.4 598 58.9
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 2.2e-173 615.1 2678 26.5
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.1e-172 612.8 547 59.2
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 2.2e-168 598.6 2486 26.6
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 7.0e-167 593.6 1140 36.2
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 1.8e-154 552.4 599 53.4
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 3.2e-151 541.6 2726 24.7
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.2e-147 529.6 1241 33.4
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 3.9e-141 508.1 554 53.1
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 8.6e-141 506.9 730 43.7
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.0e-133 483.4 753 42.2
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 5.2e-130 471.1 536 48.9
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.4e-122 446.4 911 35.1
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 8.1e-115 420.6 1138 31.8
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 4.0e-114 418.3 1086 31.0
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 6.0e-110 404.4 399 55.1
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 4.3e-108 398.3 648 42.1
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 4.1e-98 365.2 679 37.6
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 2.1e-94 352.8 308 60.7
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 3.6e-94 352.1 484 43.6
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.1e-92 347.1 856 31.9
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 1.4e-90 340.1 345 54.2
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.1e-86 326.2 469 43.7
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.5e-71 276.9 395 42.0
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 2.1e-54 219.9 186 64.5
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 1.8e-53 216.9 183 61.7
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 6.6e-48 198.4 337 38.6
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 6.1e-46 191.8 399 33.3
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 6.8e-45 188.3 167 58.7
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 7.0e-42 178.3 242 45.5
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 8.6e-40 171.4 146 62.3
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 1.1e-39 171.0 356 35.7
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.9e-39 170.2 409 31.3
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 4.7e-38 165.6 317 36.6
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.0e-33 150.2 276 36.6
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 8.6e-32 144.8 234 40.2
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 3.3e-31 142.9 151 53.0
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 9.5e-31 141.4 343 35.0
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 1.2e-30 141.0 140 52.9
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 3.4e-28 132.9 204 40.2
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 2.2e-27 130.2 173 42.8
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 1.1e-23 117.9 120 52.5
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 5.2e-21 109.0 117 48.7
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.9e-18 100.5 130 43.8
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 1.6e-17 97.4 233 34.8
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 1.6e-17 97.4 121 52.9
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 6.0e-17 95.5 240 29.2
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 6.0e-17 95.5 236 28.0
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 7.8e-17 95.1 190 34.7
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 3.0e-16 93.2 92 48.9
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 3.3e-15 89.7 343 27.1
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 2.1e-14 87.0 114 44.7
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 3.1e-13 83.2 70 58.6
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 5.2e-13 82.4 101 45.5
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 3.4e-12 79.7 161 37.3
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 7.6e-12 78.6 94 45.7
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 7.6e-12 78.6 94 45.7
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 2.2e-11 77.0 78 53.8
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 7.1e-10 72.0 104 43.3
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 9.3e-10 71.6 172 36.0
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 1.2e-09 71.2 79 50.6
RcHm_v2.0_Chr5g0039541 Rosa chinensis HOM05D003876 ORTHO05D004560 2.1e-09 70.5 64 48.4
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 4.6e-09 69.3 419 20.0
Psat5g198920 Pisum sativum HOM05D003876 ORTHO05D004560 7.8e-09 68.6 93 45.2
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.7e-08 67.4 289 24.9
SEGI_04455 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 4.8e-06 59.3 97 30.9


User provided reference genes

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