Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G013130 Citrullus lanatus HOM05D005914 ORTHO05D007361 9.5e-228 793.1 387 100.0
MELO3C011235.2 Cucumis melo HOM05D005914 ORTHO05D007361 2.7e-206 721.8 387 91.7
Sed0010731 Sechium edule HOM05D005914 ORTHO05D007361 2.4e-186 655.6 361 89.5
Haze_21570 Corylus avellana HOM05D005914 ORTHO05D007361 2.5e-159 565.8 386 73.1
Cfa013180 Carpinus fangiana HOM05D005914 ORTHO05D007361 1.2e-158 563.5 386 72.5
QL02p022744 Quercus lobata HOM05D005914 ORTHO05D007361 2.0e-153 546.2 381 71.7
CsaV3_2G031850 Cucumis sativus L. HOM05D005914 ORTHO05D007361 2.6e-153 545.8 393 73.3
CiPaw.07G220900 Carya illinoinensis HOM05D005914 ORTHO05D007361 3.8e-152 542.0 382 69.9
Thecc.09G149100 Theobroma cacao HOM05D005914 ORTHO05D007361 3.8e-152 542.0 381 70.6
TAR625G1283 Trochodendron aralioides HOM05D005914 ORTHO05D007361 2.5e-151 539.3 393 67.9
RcHm_v2.0_Chr6g0298621 Rosa chinensis HOM05D005914 ORTHO05D007361 2.1e-150 536.2 380 71.1
Gohir.A08G236800 Gossypium hirsutum HOM05D005914 ORTHO05D007361 4.7e-150 535.0 394 67.3
FvH4_2g29650 Fragaria vesca HOM05D005914 ORTHO05D007361 6.1e-150 534.6 387 69.0
TWI63G0300 Tripterygium wilfordii HOM05D005914 ORTHO05D007361 6.1e-150 534.6 386 68.4
FAN24G3193 Fragaria x ananassa HOM05D005914 ORTHO05D007361 1.0e-149 533.9 387 69.0
Ciclev10008576m.g Citrus clementina HOM05D005914 ORTHO05D007361 1.4e-149 533.5 391 69.6
GSVIVG01035808001 Vitis vinifera HOM05D005914 ORTHO05D007361 1.4e-149 533.5 387 70.0
Atru.chr7.2376 Acer truncatum HOM05D005914 ORTHO05D007361 1.5e-148 530.0 385 68.6
Gorai.004G274400 Gossypium raimondii HOM05D005914 ORTHO05D007361 2.0e-148 529.6 380 68.4
CANSAT80G2406 Cannabis sativa HOM05D005914 ORTHO05D007361 7.5e-148 527.7 379 69.9
CANSAT80G0109 Cannabis sativa HOM05D005914 ORTHO05D007361 2.8e-147 525.8 379 69.7
Potri.006G250800 Populus trichocarpa HOM05D005914 ORTHO05D007361 1.4e-146 523.5 386 67.1
CSS0046358 Camellia sinensis var. sinensis HOM05D005914 ORTHO05D007361 7.0e-146 521.2 382 67.3
Sabra06G0196100 Salix brachista HOM05D005914 ORTHO05D007361 9.1e-146 520.8 381 68.5
MD15G1120500 Malus domestica HOM05D005914 ORTHO05D007361 2.0e-145 519.6 387 68.5
THA.LOC104799221 Tarenaya hassleriana HOM05D005914 ORTHO05D007361 4.5e-145 518.5 383 67.9
Rhsim02G0194500 Rhododendron simsii HOM05D005914 ORTHO05D007361 5.9e-145 518.1 389 66.3
Actinidia22373 Actinidia chinensis HOM05D005914 ORTHO05D007361 5.0e-144 515.0 391 65.0
Thhalv10004397m.g Eutrema salsugineum HOM05D005914 ORTHO05D007361 2.7e-142 509.2 383 67.4
Eucgr.C01789 Eucalyptus grandis HOM05D005914 ORTHO05D007361 8.0e-142 507.7 381 66.4
AL6G37280 Arabidopsis lyrata HOM05D005914 ORTHO05D007361 1.0e-141 507.3 373 67.8
PGR142G2371 Punica granatum HOM05D005914 ORTHO05D007361 1.8e-141 506.5 380 67.4
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 8.8e-141 504.2 387 65.4
Lj6g0019162 Lotus japonicus HOM05D005914 ORTHO05D007361 2.0e-140 503.1 377 66.8
C07p42340 Brassica napus HOM05D005914 ORTHO05D007361 5.7e-140 501.5 386 65.8
arahy.Tifrunner.gnm1.ann1.J9LH1L Arachis hypogaea HOM05D005914 ORTHO05D007361 9.8e-140 500.7 386 65.8
BraA06t26540Z Brassica rapa HOM05D005914 ORTHO05D007361 1.7e-139 500.0 376 66.0
A06p36180 Brassica napus HOM05D005914 ORTHO05D007361 2.2e-139 499.6 377 65.8
Sp2g22050 Schrenkiella parvula HOM05D005914 ORTHO05D007361 2.2e-139 499.6 383 65.5
Aqoxy7G02060 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 6.3e-139 498.0 378 65.1
Duzib150G0329 Durio zibethinus HOM05D005914 ORTHO05D007361 6.3e-139 498.0 387 65.4
Carub.0006s2334 Capsella rubella HOM05D005914 ORTHO05D007361 8.3e-139 497.7 376 65.7
AT5G25480 Arabidopsis thaliana HOM05D005914 ORTHO05D007361 1.1e-138 497.3 377 66.8
Lalb_Chr20g0122961 Lupinus albus HOM05D005914 ORTHO05D007361 1.8e-138 496.5 374 66.8
Migut.E01476 Erythranthe guttata HOM05D005914 ORTHO05D007361 1.2e-137 493.8 377 64.5
Glyma.15G054900 Glycine max HOM05D005914 ORTHO05D007361 1.2e-137 493.8 378 66.9
PSO170G3156 Papaver somniferum HOM05D005914 ORTHO05D007361 2.0e-137 493.0 385 64.4
EL10Ac2g02591 Beta vulgaris HOM05D005914 ORTHO05D007361 5.9e-137 491.5 381 64.8
SGA_v2.0_scaffold4G02186 Striga asiatica HOM05D005914 ORTHO05D007361 2.9e-136 489.2 381 63.3
HanXRQChr13g0402741 Helianthus annuus HOM05D005914 ORTHO05D007361 5.0e-136 488.4 375 63.7
arahy.Tifrunner.gnm1.ann1.T9E77A Arachis hypogaea HOM05D005914 ORTHO05D007361 8.6e-136 487.6 384 64.6
Cc11_g01820 Coffea canephora HOM05D005914 ORTHO05D007361 1.1e-135 487.3 386 63.5
DCAR_006234 Daucus carota HOM05D005914 ORTHO05D007361 7.2e-135 484.6 410 60.0
CAN.G98.27 Capsicum annuum HOM05D005914 ORTHO05D007361 2.8e-134 482.6 379 63.6
Psat1g215880 Pisum sativum HOM05D005914 ORTHO05D007361 2.8e-134 482.6 383 63.2
Nn2g11936 Nelumbo nucifera HOM05D005914 ORTHO05D007361 5.2e-133 478.4 360 68.6
Solyc08g067070.3 Solanum lycopersicum HOM05D005914 ORTHO05D007361 8.9e-133 477.6 385 64.4
Sopen08g021020 Solanum pennellii HOM05D005914 ORTHO05D007361 7.5e-132 474.6 385 64.2
Medtr2g009140 Medicago truncatula HOM05D005914 ORTHO05D007361 1.3e-131 473.8 377 63.9
Ca_00145_v3 Cicer arietinum L. HOM05D005914 ORTHO05D007361 8.3e-131 471.1 379 63.3
COL.COLO4_23983 Corchorus olitorius HOM05D005914 ORTHO05D007361 1.4e-130 470.3 383 63.2
VMungo0540G0716 Vigna mungo HOM05D005914 ORTHO05D007361 1.8e-130 469.9 382 62.6
CDE04G0852 Ceratophyllum demersum HOM05D005914 ORTHO05D007361 4.1e-130 468.8 392 60.5
Gohir.D08G257400 Gossypium hirsutum HOM05D005914 ORTHO05D007361 5.9e-129 464.9 380 62.6
Lsat_1_v5_gn_6_22181 Lactuca sativa HOM05D005914 ORTHO05D007361 1.3e-128 463.8 367 64.0
HPP92_012620 Vanilla planifolia HOM05D005914 ORTHO05D007361 7.3e-127 458.0 383 59.5
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 3.0e-125 452.6 361 62.6
Nitab4.5_0000151g0200 Nicotiana tabacum HOM05D005914 ORTHO05D007361 6.8e-125 451.4 379 62.3
unitig_747.g21653 Utricularia gibba HOM05D005914 ORTHO05D007361 2.0e-124 449.9 375 59.2
Nitab4.5_0001669g0040 Nicotiana tabacum HOM05D005914 ORTHO05D007361 5.8e-124 448.4 377 61.8
Zm00001eb358040 Zea mays HOM05D005914 ORTHO05D007361 7.5e-124 448.0 377 59.9
arahy.Tifrunner.gnm1.ann1.71PCZ9 Arachis hypogaea HOM05D005914 ORTHO05D007361 1.4e-122 443.7 352 64.2
SalBow2G3472 Salvia bowleyana HOM05D005914 ORTHO05D007361 1.0e-120 437.6 370 61.1
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 3.1e-117 426.0 347 63.4
Prupe.1G473200 Prunus persica HOM05D005914 ORTHO05D007361 1.6e-113 413.7 316 68.0
Peaxi162Scf00341g00624 Petunia axillaris HOM05D005914 ORTHO05D007361 3.5e-113 412.5 331 63.4
AUR62024878 Chenopodium quinoa HOM05D005914 ORTHO05D007361 4.3e-111 405.6 357 59.1
Manes.16G119400 Manihot esculenta HOM05D005914 ORTHO05D007361 1.2e-110 404.1 311 65.9
Dinv11618 Davidia involucrata HOM05D005914 ORTHO05D007361 7.1e-106 388.3 302 64.6
Mapoly0011s0185 Marchantia polymorpha HOM05D005914 ORTHO05D007361 5.6e-103 378.6 449 47.4
TPR.G25250 Trifolium pratense HOM05D005914 ORTHO05D008190 2.1e-102 376.7 311 61.1
SMO146G0196 Selaginella moellendorffii HOM05D005914 ORTHO05D007361 1.5e-100 370.5 377 50.7
Pp3c12_2410 Physcomitrium patens HOM05D005914 ORTHO05D007361 2.4e-98 363.2 465 44.7
FAN27G2538 Fragaria x ananassa HOM05D005914 ORTHO05D007361 3.6e-94 349.4 373 54.4
ATR0815G040 Amborella trichopoda HOM05D005914 ORTHO05D007361 4.7e-94 349.0 348 53.2
AUR62030669 Chenopodium quinoa HOM05D005914 ORTHO05D007361 2.6e-92 343.2 334 55.1
Phvul.006G205000 Phaseolus vulgaris HOM05D005914 ORTHO05D007361 1.3e-91 340.9 293 60.1
PSO455G0041 Papaver somniferum HOM05D005914 ORTHO05D007361 1.3e-88 330.9 286 59.4
CBR_g3173 Chara braunii HOM05D005914 ORTHO05D007361 3.9e-80 302.8 538 37.7
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 4.3e-79 299.3 370 48.1
MCO14G456 Micromonas commoda HOM05D005914 ORTHO05D007361 2.9e-75 286.6 385 42.6
Os01g0612000 Oryza sativa ssp. japonica HOM05D005914 ORTHO05D007361 3.8e-75 286.2 278 54.3
MSTRG.13986 Avicennia marina HOM05D005914 ORTHO05D007361 7.4e-71 271.9 243 58.0
CARHR187910 Cardamine hirsuta HOM05D005914 ORTHO05D007361 3.7e-70 269.6 178 71.3
Cpa.g.sc91.41 Carica papaya HOM05D005914 ORTHO05D007361 1.7e-67 260.8 205 62.9
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 2.2e-67 260.4 263 54.4
MD08G1143700 Malus domestica HOM05D005914 ORTHO05D007361 2.2e-67 260.4 281 53.4
PRCOL_00003212 Prasinoderma coloniale HOM05D005914 ORTHO05D007361 6.0e-65 252.3 425 36.7
AagrBONN_evm.TU.Sc2ySwM_228.810 Anthoceros agrestis HOM05D005914 ORTHO05D007361 3.9e-64 249.6 294 47.6
MBI04_g46184_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.5e-63 247.7 350 45.1
Lj7C718G14 Lonicera japonica HOM05D005914 ORTHO05D007361 1.4e-61 241.1 264 50.0
Ah.12g063960 Amaranthus hybridus HOM05D005914 ORTHO05D007361 2.4e-61 240.4 155 71.6
RcHm_v2.0_Chr1g0355831 Rosa chinensis HOM05D005914 ORTHO05D007361 2.2e-59 233.8 253 51.4
Hma1.2p1_0000F.1_g000780 Hydrangea macrophylla HOM05D005914 ORTHO05D007361 2.8e-54 216.9 218 55.0
MD15G1439700 Malus domestica HOM05D005914 ORTHO05D007361 1.7e-46 191.0 404 36.6
Glyma.08G177800 Glycine max HOM05D005914 ORTHO05D007361 4.2e-42 176.4 197 48.7
MCO11G560 Micromonas commoda HOM05D005914 ORTHO05D007361 1.6e-41 174.5 399 32.1
SEGI_35502 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 2.0e-39 167.5 111 70.3
Nitab4.5_0003498g0080 Nicotiana tabacum HOM05D005914 ORTHO05D007361 1.3e-35 154.8 132 61.4
PGR031G2948 Punica granatum HOM05D005914 ORTHO05D007361 8.8e-32 142.1 85 74.1
Cre12.g484600 Chlamydomonas reinhardtii HOM05D005914 ORTHO05D007361 1.3e-30 138.3 180 41.7
CAN.G374.12 Capsicum annuum HOM05D005914 ORTHO05D007361 7.0e-29 132.5 311 31.8
Sc09g0008460 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.0e-27 128.6 141 44.7
Oeu033137.1 Olea europaea HOM05D005914 ORTHO05D007361 5.0e-27 126.3 84 73.8
Sc09g0008440 Simmondsia chinensis HOM05D005914 ORTHO05D007361 7.2e-26 122.5 84 63.1
Sc09g0008580 Simmondsia chinensis HOM05D005914 ORTHO05D007361 2.1e-25 120.9 165 44.8
Sc09g0008450 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.0e-24 118.6 80 70.0
TPR.G22731 Trifolium pratense HOM05D005914 ORTHO05D007361 1.8e-21 107.8 59 88.1
Aqoxy7G02061 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 1.5e-18 98.2 52 82.7
SEGI_14251 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 1.2e-17 95.1 69 68.1
MBI04_g10409_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.3e-14 85.1 63 63.5
MBI04_g46185_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.7e-14 84.7 63 63.5
Sc09g0008540 Simmondsia chinensis HOM05D002899 ORTHO05D003850 8.3e-14 82.4 53 67.9
SEGI_16557 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 5.9e-12 76.3 52 67.3
Ah.12g063950 Amaranthus hybridus HOM05D005914 ORTHO05D007361 1.0e-11 75.5 120 37.5
Sc09g0008600 Simmondsia chinensis HOM05D005914 ORTHO05D007361 4.7e-09 66.6 44 65.9
MD08G1144900 Malus domestica HOM05D005914 ORTHO05D007361 1.4e-08 65.1 83 39.8
Lj7A718T66 Lonicera japonica HOM05D005914 ORTHO05D007361 4.4e-07 60.1 68 51.5
Glyma.08G177700 Glycine max HOM05D005914 ORTHO05D007361 5.8e-07 59.7 28 89.3
Ah.12g063940 Amaranthus hybridus HOM05D005914 ORTHO05D007361 6.4e-06 56.2 34 70.6


User provided reference genes

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