Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 0.0e+00 1435.6 709 100.0
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 0.0e+00 1337.8 719 91.5
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 0.0e+00 1295.4 715 90.1
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 0.0e+00 1295.4 724 88.7
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 1.0e-296 1023.1 719 70.7
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 3.7e-294 1014.6 718 69.8
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 1.5e-292 1009.2 722 69.3
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 2.0e-292 1008.8 709 70.5
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 8.5e-291 1003.4 695 70.2
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 3.2e-290 1001.5 710 69.6
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 3.2e-290 1001.5 720 68.3
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 1.2e-289 999.6 719 68.4
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 1.6e-289 999.2 719 68.4
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 5.2e-288 994.2 727 67.5
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 8.8e-288 993.4 708 68.9
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 9.7e-287 989.9 719 69.0
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 6.3e-286 987.3 719 68.3
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 1.1e-285 986.5 709 69.0
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 3.8e-283 978.0 721 67.7
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 9.4e-282 973.4 718 66.0
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 1.2e-281 973.0 719 68.0
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 1.6e-281 972.6 718 65.9
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 6.1e-281 970.7 721 67.0
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 1.8e-280 969.1 718 67.3
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 6.7e-280 967.2 718 67.1
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 7.5e-279 963.8 718 66.0
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 5.0e-275 951.0 729 64.3
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 6.5e-275 950.7 714 65.5
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 1.1e-274 949.9 720 65.4
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 4.2e-274 948.0 711 66.1
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 8.0e-273 943.7 722 65.0
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 1.4e-272 943.0 710 65.5
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 1.4e-272 943.0 718 66.0
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 1.4e-272 943.0 719 63.7
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 9.8e-271 936.8 716 65.2
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 3.7e-270 934.9 720 64.2
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 6.3e-270 934.1 716 65.2
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 2.4e-269 932.2 720 63.9
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 1.7e-267 926.0 722 64.3
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 3.8e-267 924.9 712 65.3
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 8.6e-267 923.7 697 65.9
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 1.1e-266 923.3 714 64.4
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 7.2e-266 920.6 723 65.0
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 9.5e-266 920.2 697 65.3
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 2.8e-265 918.7 722 63.3
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 1.8e-264 916.0 660 68.8
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 8.9e-264 913.7 723 62.9
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 4.9e-262 907.9 719 61.8
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 6.3e-262 907.5 718 61.7
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 4.1e-261 904.8 696 64.5
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 3.5e-260 901.7 720 62.4
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 4.5e-260 901.4 708 64.1
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 1.9e-258 896.0 630 69.7
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 1.2e-257 893.3 708 62.0
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 1.6e-257 892.9 720 61.1
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 3.6e-257 891.7 702 64.4
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 1.0e-256 890.2 722 62.0
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 2.3e-256 889.0 719 61.1
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 2.0e-255 885.9 719 61.1
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 7.5e-255 884.0 709 61.4
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 9.8e-255 883.6 710 61.4
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 1.7e-254 882.9 719 60.6
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 2.4e-253 879.0 719 60.1
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 7.0e-253 877.5 719 60.1
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 9.2e-253 877.1 718 60.2
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 1.2e-252 876.7 714 60.4
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 1.6e-252 876.3 714 60.4
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 4.6e-252 874.8 723 61.1
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 4.6e-252 874.8 723 60.6
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 2.3e-251 872.5 651 66.1
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 9.5e-250 867.1 723 59.8
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 4.0e-248 861.7 725 58.8
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 1.5e-247 859.8 711 60.5
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 1.5e-247 859.8 723 60.0
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 2.6e-247 859.0 721 59.2
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 7.5e-247 857.4 731 59.6
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 2.3e-243 845.9 735 58.2
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 6.6e-243 844.3 705 61.3
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.5e-242 843.2 722 58.4
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 7.3e-242 840.9 650 64.6
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 8.1e-241 837.4 658 63.7
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 2.3e-240 835.9 625 65.9
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 7.5e-239 830.9 986 48.5
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 8.3e-238 827.4 589 68.6
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 9.2e-237 823.9 734 55.9
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 3.5e-236 822.0 589 67.1
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 1.7e-235 819.7 723 56.4
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.6e-233 813.1 718 59.1
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 3.6e-233 812.0 572 68.4
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 3.4e-231 805.4 541 71.9
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 2.2e-230 802.7 732 54.6
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 4.0e-224 781.9 875 49.4
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 1.6e-220 770.0 569 66.1
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 1.1e-218 763.8 705 56.6
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 1.6e-204 716.8 980 45.8
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 7.9e-196 688.0 718 52.9
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 2.7e-180 636.3 453 69.1
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 1.0e-171 607.8 734 44.4
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 2.0e-167 593.6 486 60.9
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 1.5e-154 550.8 705 41.7
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 6.8e-147 525.4 627 44.3
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 1.0e-142 511.5 363 68.3
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 2.1e-124 450.7 450 51.6
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 4.1e-120 436.4 373 57.4
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 2.2e-97 360.9 289 61.2
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 1.3e-86 325.1 255 63.5
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 2.3e-86 324.3 225 72.9
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 1.0e-73 282.3 268 54.1
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 5.1e-70 270.0 290 50.3
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 6.3e-60 236.5 275 45.8
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 5.9e-58 229.9 150 69.3
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.7e-57 228.4 164 72.0
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.0e-45 188.3 263 40.3
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.2e-39 169.1 263 37.3
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.1e-39 168.3 209 42.6
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 1.0e-33 149.4 143 53.8
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 3.4e-29 134.4 154 42.9
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-28 131.7 169 39.6
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 1.4e-27 129.0 130 55.4
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 7.8e-26 123.2 100 64.0
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 1.0e-25 122.9 102 61.8
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 1.7e-25 122.1 107 60.7
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 1.1e-24 119.4 100 63.0
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 1.1e-24 119.4 83 61.4
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.1e-24 119.4 98 56.1
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 8.0e-23 113.2 112 52.7
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 2.6e-21 108.2 109 48.6
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 5.8e-21 107.1 87 66.7
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 6.4e-20 103.6 60 75.0
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 7.0e-19 100.1 109 46.8
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 7.0e-19 100.1 56 76.8
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 9.2e-19 99.8 103 57.3
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 2.0e-18 98.6 109 45.9
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 2.7e-18 98.2 75 66.7
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 4.3e-16 90.9 69 59.4
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 5.6e-16 90.5 231 28.6
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.4e-14 85.9 63 63.5
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 2.3e-14 85.1 129 38.0
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 2.0e-13 82.0 59 64.4
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 7.5e-13 80.1 55 70.9
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 1.1e-11 76.3 70 54.3
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 4.1e-11 74.3 59 57.6
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 5.4e-11 73.9 73 50.7
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 7.1e-11 73.6 57 59.6
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 7.1e-11 73.6 57 59.6
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.2e-10 72.8 70 50.0
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 2.1e-10 72.0 77 48.1
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 3.5e-10 71.2 166 29.5
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 3.9e-09 67.8 43 72.1
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 8.6e-09 66.6 51 62.7
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 2.3e-06 58.5 87 44.8


User provided reference genes

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