Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G004090 Citrullus lanatus HOM05D003445 ORTHO05D004114 1.7e-58 229.2 119 100.0
ClCG05G021420 Citrullus lanatus HOM05D003445 ORTHO05D004114 6.2e-53 210.7 143 81.8
ClCG11G007340 Citrullus lanatus HOM05D003445 ORTHO05D004114 6.2e-53 210.7 119 92.4
MELO3C012385.2 Cucumis melo HOM05D003445 ORTHO05D004114 6.2e-53 210.7 143 81.8
CsaV3_5G035820 Cucumis sativus L. HOM05D003445 ORTHO05D004114 6.2e-53 210.7 143 81.8
Sed0007053 Sechium edule HOM05D003445 ORTHO05D004114 2.9e-50 201.8 143 77.6
Sed0013139 Sechium edule HOM05D003445 ORTHO05D004114 1.9e-49 199.1 143 77.6
Cfa001777 Carpinus fangiana HOM05D003445 ORTHO05D004114 1.7e-47 192.6 143 74.8
Haze_16775 Corylus avellana HOM05D003445 ORTHO05D004114 1.7e-47 192.6 143 74.8
CiPaw.01G265300 Carya illinoinensis HOM05D003445 ORTHO05D004114 1.5e-46 189.5 143 71.3
QL08p053096 Quercus lobata HOM05D003445 ORTHO05D004114 2.5e-46 188.7 143 73.4
CiPaw.02G170100 Carya illinoinensis HOM05D003445 ORTHO05D004114 4.8e-45 184.5 143 70.6
Prupe.2G093900 Prunus persica HOM05D003445 ORTHO05D004114 1.4e-44 183.0 143 71.3
Cpa.g.sc53.166 Carica papaya HOM05D003445 ORTHO05D004114 6.9e-44 180.6 143 70.6
Thecc.10G089500 Theobroma cacao HOM05D003445 ORTHO05D004114 4.5e-43 177.9 143 67.8
MD02G1237900 Malus domestica HOM05D003445 ORTHO05D004114 1.3e-42 176.4 144 67.4
MD02G1241800 Malus domestica HOM05D003445 ORTHO05D004114 1.3e-42 176.4 144 67.4
CANSAT56G2777 Cannabis sativa HOM05D003445 ORTHO05D004114 4.9e-42 174.5 144 66.7
Gorai.011G234000 Gossypium raimondii HOM05D003445 ORTHO05D004114 4.9e-42 174.5 143 66.4
TWI38G0253 Tripterygium wilfordii HOM05D003445 ORTHO05D004114 4.9e-42 174.5 143 66.4
Gohir.D10G208300 Gossypium hirsutum HOM05D003445 ORTHO05D004114 8.4e-42 173.7 143 65.7
Gohir.A05G291200 Gossypium hirsutum HOM05D003445 ORTHO05D004114 1.9e-41 172.6 143 66.4
Gohir.D05G292300 Gossypium hirsutum HOM05D003445 ORTHO05D004114 1.9e-41 172.6 143 66.4
Gorai.009G308500 Gossypium raimondii HOM05D003445 ORTHO05D004114 1.9e-41 172.6 143 66.4
Manes.11G087166 Manihot esculenta HOM05D003445 ORTHO05D004114 5.4e-41 171.0 143 63.6
GSVIVG01016165001 Vitis vinifera HOM05D003445 ORTHO05D004114 7.1e-41 170.6 143 65.7
Gohir.A10G200400 Gossypium hirsutum HOM05D003445 ORTHO05D004114 9.3e-41 170.2 143 64.3
TWI15G0156 Tripterygium wilfordii HOM05D003445 ORTHO05D004114 9.3e-41 170.2 144 66.0
TWI63G1099 Tripterygium wilfordii HOM05D003445 ORTHO05D004114 1.6e-40 169.5 143 65.7
Duzib114G0852 Durio zibethinus HOM05D003445 ORTHO05D004114 2.1e-40 169.1 143 65.7
TPR.G37741 Trifolium pratense HOM05D003445 ORTHO05D004114 4.6e-40 167.9 144 66.0
Gorai.010G207600 Gossypium raimondii HOM05D003445 ORTHO05D004114 1.0e-39 166.8 143 65.0
Ca_10454_v3 Cicer arietinum L. HOM05D003445 ORTHO05D004114 1.8e-39 166.0 146 63.7
Glyma.10G198300 Glycine max HOM05D003445 ORTHO05D004114 1.8e-39 166.0 144 63.9
Eucgr.G02737 Eucalyptus grandis HOM05D003445 ORTHO05D004114 3.0e-39 165.2 144 64.6
Gohir.D06G176400 Gossypium hirsutum HOM05D003445 ORTHO05D004114 3.0e-39 165.2 143 64.3
Nn6g35202 Nelumbo nucifera HOM05D003445 ORTHO05D004114 3.9e-39 164.9 143 64.3
arahy.Tifrunner.gnm1.ann1.2WVS1U Arachis hypogaea HOM05D003445 ORTHO05D004114 6.7e-39 164.1 144 63.2
arahy.Tifrunner.gnm1.ann1.68AZQV Arachis hypogaea HOM05D003445 ORTHO05D004114 6.7e-39 164.1 144 63.2
Medtr1g090773 Medicago truncatula HOM05D003445 ORTHO05D004114 8.7e-39 163.7 144 63.9
Glyma.20G191700 Glycine max HOM05D003445 ORTHO05D004114 1.5e-38 162.9 144 63.2
Lj5g0011720 Lotus japonicus HOM05D003445 ORTHO05D004114 1.5e-38 162.9 144 63.2
TAR633G1158 Trochodendron aralioides HOM05D003445 ORTHO05D004114 1.9e-38 162.5 143 64.3
Duzib128G1656 Durio zibethinus HOM05D003445 ORTHO05D004114 2.5e-38 162.2 140 65.0
VMungo0720G0843 Vigna mungo HOM05D003445 ORTHO05D004114 2.5e-38 162.2 144 63.2
Phvul.007G141100 Phaseolus vulgaris HOM05D003445 ORTHO05D004114 4.3e-38 161.4 144 63.2
Lalb_Chr02g0151111 Lupinus albus HOM05D003445 ORTHO05D004114 5.6e-38 161.0 145 62.8
Gohir.A06G168900 Gossypium hirsutum HOM05D003445 ORTHO05D004114 7.4e-38 160.6 143 63.6
PGR142G3968 Punica granatum HOM05D003445 ORTHO05D004114 7.4e-38 160.6 143 62.9
RcHm_v2.0_Chr1g0335271 Rosa chinensis HOM05D003445 ORTHO05D004114 7.4e-38 160.6 144 65.3
FAN03G1234 Fragaria x ananassa HOM05D003445 ORTHO05D004114 9.6e-38 160.2 144 66.0
FvH4_7g06600 Fragaria vesca HOM05D003445 ORTHO05D004114 1.3e-37 159.8 144 65.3
FAN06G2771 Fragaria x ananassa HOM05D003445 ORTHO05D004114 1.3e-37 159.8 144 65.3
Psat6g173360 Pisum sativum HOM05D003445 ORTHO05D004114 1.3e-37 159.8 143 62.2
Potri.008G030700 Populus trichocarpa HOM05D003445 ORTHO05D004114 1.3e-37 159.8 143 59.4
MD07G1074100 Malus domestica HOM05D003445 ORTHO05D004114 2.1e-37 159.1 146 63.0
FAN10G3468 Fragaria x ananassa HOM05D003445 ORTHO05D004114 1.8e-36 156.0 144 64.6
Lalb_Chr06g0170031 Lupinus albus HOM05D003445 ORTHO05D004114 2.4e-36 155.6 144 62.5
FAN01G0566 Fragaria x ananassa HOM05D003445 ORTHO05D004114 4.0e-36 154.8 145 63.4
Aqoxy1G01069 Aquilegia oxysepala HOM05D003445 ORTHO05D004114 5.3e-36 154.5 142 60.6
Potri.010G230500 Populus trichocarpa HOM05D003445 ORTHO05D004114 2.0e-35 152.5 143 59.4
Sabra10G0178800 Salix brachista HOM05D003445 ORTHO05D004114 3.4e-35 151.8 143 58.7
CSS0030750 Camellia sinensis var. sinensis HOM05D003445 ORTHO05D004114 5.8e-35 151.0 91 80.2
CSS0001382 Camellia sinensis var. sinensis HOM05D003445 ORTHO05D004114 1.0e-34 150.2 143 59.4
Lj3C935G7 Lonicera japonica HOM05D003445 ORTHO05D004114 2.2e-34 149.1 141 58.9
Lalb_Chr01g0010281 Lupinus albus HOM05D003445 ORTHO05D004114 2.2e-34 149.1 143 58.0
COL.COLO4_02905 Corchorus olitorius HOM05D003445 ORTHO05D004114 2.9e-34 148.7 91 80.2
Lalb_Chr19g0129371 Lupinus albus HOM05D003445 ORTHO05D004114 3.8e-34 148.3 142 59.2
arahy.Tifrunner.gnm1.ann1.XAYS0A Arachis hypogaea HOM05D003445 ORTHO05D004114 4.9e-34 147.9 91 80.2
arahy.Tifrunner.gnm1.ann1.L2B5VZ Arachis hypogaea HOM05D003445 ORTHO05D004114 1.1e-33 146.7 91 79.1
Ciclev10032050m.g Citrus clementina HOM05D003445 ORTHO05D004114 1.1e-33 146.7 144 59.7
Nn3g19092 Nelumbo nucifera HOM05D003445 ORTHO05D004114 1.4e-33 146.4 144 59.0
ATR0043G023 Amborella trichopoda HOM05D003445 ORTHO05D004114 1.9e-33 146.0 140 58.6
Sabra08G0020500 Salix brachista HOM05D003445 ORTHO05D004114 1.9e-33 146.0 143 55.2
Sc09g0005840 Simmondsia chinensis HOM05D003445 ORTHO05D004114 4.2e-33 144.8 142 56.3
TAR369G0057 Trochodendron aralioides HOM05D003445 ORTHO05D004114 7.1e-33 144.1 143 58.7
Actinidia34789 Actinidia chinensis HOM05D003445 ORTHO05D004114 9.3e-33 143.7 143 58.0
ATR0043G036 Amborella trichopoda HOM05D003445 ORTHO05D004114 9.3e-33 143.7 140 57.9
Atru.chr12.903 Acer truncatum HOM05D003445 ORTHO05D004114 1.2e-32 143.3 91 78.0
AL6G14070 Arabidopsis lyrata HOM05D003445 ORTHO05D004114 1.2e-32 143.3 143 55.9
Thhalv10014068m.g Eutrema salsugineum HOM05D003445 ORTHO05D004114 1.6e-32 142.9 143 55.9
Hund22304 Selenicereus undatus HOM05D003445 ORTHO05D004114 1.6e-32 142.9 137 59.1
AT5G04430 Arabidopsis thaliana HOM05D003445 ORTHO05D004114 2.1e-32 142.5 143 55.9
PSO339G2738 Papaver somniferum HOM05D003445 ORTHO05D004114 4.6e-32 141.4 91 73.6
Carub.0006s0337 Capsella rubella HOM05D003445 ORTHO05D004114 6.0e-32 141.0 143 55.2
Ca_10441_v3 Cicer arietinum L. HOM05D003445 ORTHO05D004114 6.0e-32 141.0 91 75.8
TAR623G1080 Trochodendron aralioides HOM05D003445 ORTHO05D004114 6.0e-32 141.0 91 74.7
Sp6g38310 Schrenkiella parvula HOM05D003445 ORTHO05D004114 1.3e-31 139.8 143 55.2
PSO063G2817 Papaver somniferum HOM05D003445 ORTHO05D004114 1.8e-31 139.4 91 72.5
THA.LOC104823197 Tarenaya hassleriana HOM05D003445 ORTHO05D004114 1.8e-31 139.4 91 72.5
EL10As9g23938 Beta vulgaris HOM05D003445 ORTHO05D004114 2.3e-31 139.0 141 55.3
Actinidia38891 Actinidia chinensis HOM05D003445 ORTHO05D004114 3.0e-31 138.7 145 56.6
CARHR208830 Cardamine hirsuta HOM05D003445 ORTHO05D004114 3.0e-31 138.7 143 54.5
Hma1.2p1_1009F.1_g247280 Hydrangea macrophylla HOM05D003445 ORTHO05D004114 3.0e-31 138.7 142 56.3
THA.LOC104826969 Tarenaya hassleriana HOM05D003445 ORTHO05D004114 3.0e-31 138.7 91 71.4
C02p01930 Brassica napus HOM05D003445 ORTHO05D004114 3.9e-31 138.3 91 71.4
BolC2t06150H Brassica oleracea HOM05D003445 ORTHO05D004114 3.9e-31 138.3 91 71.4
BraA02t04812Z Brassica rapa HOM05D003445 ORTHO05D004114 3.9e-31 138.3 91 71.4
vmacro10262 Vaccinium macrocarpon HOM05D003445 ORTHO05D004114 3.9e-31 138.3 142 53.5
BraA10t45211Z Brassica rapa HOM05D003445 ORTHO05D004114 6.7e-31 137.5 143 53.8
Aqoxy2G01633 Aquilegia oxysepala HOM05D003445 ORTHO05D004114 8.7e-31 137.1 91 72.5
A10p31650 Brassica napus HOM05D003445 ORTHO05D004114 8.7e-31 137.1 143 53.8
PSO339G4614 Papaver somniferum HOM05D003445 ORTHO05D004114 8.7e-31 137.1 146 56.2
DCAR_019061 Daucus carota HOM05D003445 ORTHO05D004114 1.5e-30 136.3 91 74.7
Rhsim09G0145400 Rhododendron simsii HOM05D003445 ORTHO05D004114 1.9e-30 136.0 91 69.2
ECA233G3917 Erigeron canadensis HOM05D003445 ORTHO05D004114 3.3e-30 135.2 144 54.2
BcaB01g05898 Brassica carinata HOM05D003445 ORTHO05D004114 4.3e-30 134.8 140 55.7
A03p01680 Brassica napus HOM05D003445 ORTHO05D004114 4.3e-30 134.8 140 55.7
C03p02050 Brassica napus HOM05D003445 ORTHO05D004114 4.3e-30 134.8 140 55.7
BolC3t12758H Brassica oleracea HOM05D003445 ORTHO05D004114 4.3e-30 134.8 140 55.7
BraA03t09543Z Brassica rapa HOM05D003445 ORTHO05D004114 4.3e-30 134.8 140 55.7
PSO801G0704 Papaver somniferum HOM05D003445 ORTHO05D004114 4.3e-30 134.8 146 55.5
BcaB05g21762 Brassica carinata HOM05D003445 ORTHO05D004114 5.7e-30 134.4 140 55.0
BcaC03g12945 Brassica carinata HOM05D003445 ORTHO05D004114 7.4e-30 134.0 140 54.3
THA.LOC104816445 Tarenaya hassleriana HOM05D003445 ORTHO05D004114 7.4e-30 134.0 143 52.4
Ca_16774_v3 Cicer arietinum L. HOM05D003445 ORTHO05D004114 9.6e-30 133.7 118 61.0
HPP92_014722 Vanilla planifolia HOM05D003445 ORTHO05D004114 9.6e-30 133.7 91 73.6
MSTRG.27501 Avicennia marina HOM05D003445 ORTHO05D004114 1.3e-29 133.3 91 69.2
BcaC06g32151 Brassica carinata HOM05D003445 ORTHO05D004114 1.3e-29 133.3 123 59.3
C09p72320 Brassica napus HOM05D003445 ORTHO05D004114 1.3e-29 133.3 123 59.3
BolC9t59976H Brassica oleracea HOM05D003445 ORTHO05D004114 1.3e-29 133.3 123 59.3
HanXRQChr14g0456171 Helianthus annuus HOM05D003445 ORTHO05D004114 2.1e-29 132.5 91 69.2
Lsat_1_v5_gn_2_103201 Lactuca sativa HOM05D003445 ORTHO05D004114 2.1e-29 132.5 128 56.2
Aa31LG11G5300 Aethionema arabicum HOM05D003445 ORTHO05D004114 2.8e-29 132.1 143 52.4
PGSC0003DMG400023482 Solanum tuberosum HOM05D003445 ORTHO05D004114 2.8e-29 132.1 143 53.1
Nitab4.5_0000107g0190 Nicotiana tabacum HOM05D003445 ORTHO05D004114 3.7e-29 131.7 91 71.4
Migut.F01911 Erythranthe guttata HOM05D003445 ORTHO05D004114 4.8e-29 131.3 91 65.9
Nitab4.5_0010505g0010 Nicotiana tabacum HOM05D003445 ORTHO05D004114 4.8e-29 131.3 91 65.9
Peaxi162Scf00409g00218 Petunia axillaris HOM05D003445 ORTHO05D004114 4.8e-29 131.3 91 69.2
SalBow4G0167 Salvia bowleyana HOM05D003445 ORTHO05D004114 4.8e-29 131.3 91 63.7
Zm00001eb259230 Zea mays HOM05D003445 ORTHO05D004114 4.8e-29 131.3 91 73.6
CDE08G1488 Ceratophyllum demersum HOM05D003445 ORTHO05D004114 6.2e-29 131.0 137 55.5
AUR62041269 Chenopodium quinoa HOM05D003445 ORTHO05D004114 6.2e-29 131.0 91 67.0
Nitab4.5_0009159g0020 Nicotiana tabacum HOM05D003445 ORTHO05D004114 6.2e-29 131.0 91 70.3
Sopen11g003810 Solanum pennellii HOM05D003445 ORTHO05D004114 6.2e-29 131.0 142 52.1
PGSC0003DMG400027335 Solanum tuberosum HOM05D003445 ORTHO05D004114 6.2e-29 131.0 91 67.0
Nitab4.5_0002692g0090 Nicotiana tabacum HOM05D003445 ORTHO05D004114 8.2e-29 130.6 143 51.7
HPP92_020767 Vanilla planifolia HOM05D003445 ORTHO05D004114 8.2e-29 130.6 91 73.6
HanXRQChr08g0218311 Helianthus annuus HOM05D003445 ORTHO05D004114 1.4e-28 129.8 145 50.3
Lsat_1_v5_gn_8_17860 Lactuca sativa HOM05D003445 ORTHO05D004114 1.8e-28 129.4 142 53.5
Solyc05g055450.3 Solanum lycopersicum HOM05D003445 ORTHO05D004114 1.8e-28 129.4 143 52.4
Sopen05g033900 Solanum pennellii HOM05D003445 ORTHO05D004114 1.8e-28 129.4 143 52.4
AUR62041795 Chenopodium quinoa HOM05D003445 ORTHO05D004114 2.4e-28 129.0 91 65.9
Oeu060276.1 Olea europaea HOM05D003445 ORTHO05D004114 2.4e-28 129.0 139 54.0
Solyc11g007940.2 Solanum lycopersicum HOM05D003445 ORTHO05D004114 2.4e-28 129.0 142 51.4
Zm00001eb191030 Zea mays HOM05D003445 ORTHO05D004114 2.4e-28 129.0 149 53.7
CAN.G135.24 Capsicum annuum HOM05D003445 ORTHO05D004114 3.1e-28 128.6 91 67.0
Cc02_g10580 Coffea canephora HOM05D003445 ORTHO05D004114 3.1e-28 128.6 145 51.0
SalBow6G4419 Salvia bowleyana HOM05D003445 ORTHO05D004114 4.1e-28 128.3 91 63.7
Os02g0822300 Oryza sativa ssp. japonica HOM05D003445 ORTHO05D004114 5.3e-28 127.9 149 53.0
Peaxi162Scf00253g00318 Petunia axillaris HOM05D003445 ORTHO05D004114 3.4e-27 125.2 91 68.1
CDE06G1707 Ceratophyllum demersum HOM05D003445 ORTHO05D004114 5.8e-27 124.4 91 64.8
Oeu060277.5 Olea europaea HOM05D003445 ORTHO05D004114 5.8e-27 124.4 91 64.8
unitig_736.g22325 Utricularia gibba HOM05D003445 ORTHO05D004114 5.8e-27 124.4 91 64.8
CAN.G1891.4 Capsicum annuum HOM05D003445 ORTHO05D004114 1.0e-26 123.6 91 64.8
Nitab4.5_0000096g0210 Nicotiana tabacum HOM05D003445 ORTHO05D004114 1.0e-26 123.6 143 49.7
SGA_v2.0_scaffold62G21367 Striga asiatica HOM05D003445 ORTHO05D004114 1.4e-25 119.8 91 63.7
MSTRG.8120 Avicennia marina HOM05D003445 ORTHO05D004114 1.2e-24 116.7 134 47.0
Mapoly0060s0047 Marchantia polymorpha HOM05D003445 ORTHO05D004114 1.2e-24 116.7 92 64.1
CDE03G0484 Ceratophyllum demersum HOM05D003445 ORTHO05D004114 7.9e-24 114.0 133 50.4
AagrBONN_evm.TU.Sc2ySwM_228.931 Anthoceros agrestis HOM05D003445 ORTHO05D004114 2.3e-23 112.5 134 47.8
MBI17_g34404_MAGBIO Magnolia biondii HOM05D003445 ORTHO05D004114 5.1e-23 111.3 70 74.3
BcaNung04928 Brassica carinata HOM05D003445 ORTHO05D004114 6.7e-23 110.9 91 61.5
BraA05t22659Z Brassica rapa HOM05D003445 ORTHO05D004114 2.5e-22 109.0 91 60.4
SMO340G0186 Selaginella moellendorffii HOM05D003445 ORTHO05D004114 2.5e-22 109.0 91 57.1
CBR_g30931 Chara braunii HOM05D003445 ORTHO05D004114 3.3e-22 108.6 91 58.2
A05p38680 Brassica napus HOM05D003445 ORTHO05D004114 5.7e-22 107.8 91 60.4
MBI17_g44462_MAGBIO Magnolia biondii HOM05D003445 ORTHO05D004114 1.6e-21 106.3 87 58.6
C05p57550 Brassica napus HOM05D003445 ORTHO05D004114 4.8e-21 104.8 136 47.8
BolC5t34412H Brassica oleracea HOM05D003445 ORTHO05D004114 4.8e-21 104.8 136 47.8
SMO347G0528 Selaginella moellendorffii HOM05D003445 ORTHO05D004114 8.2e-21 104.0 91 53.8
DCAR_006384 Daucus carota HOM05D003445 ORTHO05D004114 3.1e-20 102.1 91 58.2
arahy.Tifrunner.gnm1.ann1.G474U2 Arachis hypogaea HOM05D003445 ORTHO05D014890 4.1e-20 101.7 91 60.4
Dinv31262 Davidia involucrata HOM05D003445 ORTHO05D004114 1.7e-18 96.3 104 57.7
PRCOL_00000948 Prasinoderma coloniale HOM05D003445 ORTHO05D004114 1.7e-18 96.3 102 46.1
BcaC05g29458 Brassica carinata HOM05D003445 ORTHO05D004114 1.2e-16 90.1 136 44.9
Ca_19637_v3 Cicer arietinum L. HOM05D003445 ORTHO05D004114 6.1e-16 87.8 58 70.7
Ca_07751_v3 Cicer arietinum L. HOM05D001472 ORTHO05D002655 1.4e-15 86.7 103 50.5
MCO01G249 Micromonas commoda HOM05D003445 ORTHO05D004114 3.9e-15 85.1 91 48.4
TPR.G12142 Trifolium pratense HOM05D002637 ORTHO05D009046 2.5e-14 82.4 46 87.0
unitig_899.g15058 Utricularia gibba HOM05D003445 ORTHO05D004114 3.1e-12 75.5 61 57.4
Cre16.g672750 Chlamydomonas reinhardtii HOM05D003445 ORTHO05D004114 4.5e-11 71.6 102 37.3
Sp3g08770 Schrenkiella parvula HOM05D003445 ORTHO05D004114 2.1e-08 62.8 56 53.6
Zm00001eb239890 Zea mays HOM05D001443 ORTHO05D001352 7.4e-06 54.3 100 35.0
CSS0045360 Camellia sinensis var. sinensis HOM05D001443 ORTHO05D001352 9.7e-06 53.9 91 35.2


User provided reference genes

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