Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 0.0e+00 1384.8 678 100.0
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 0.0e+00 1259.6 681 90.3
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 0.0e+00 1239.2 681 89.4
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 0.0e+00 1212.6 680 88.7
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 1.9e-284 982.2 687 69.7
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 1.1e-282 976.5 683 70.0
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 3.8e-280 968.0 688 68.0
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 8.4e-280 966.8 762 64.0
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 7.1e-279 963.8 686 69.4
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 5.1e-277 957.6 716 65.6
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 5.1e-277 957.6 689 68.1
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.1e-275 952.2 682 68.2
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 3.1e-274 948.3 688 68.6
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 6.9e-274 947.2 682 67.7
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 7.6e-273 943.7 685 67.7
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 1.3e-272 943.0 682 68.5
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 1.1e-271 939.9 688 68.2
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.9e-271 939.1 716 64.8
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 6.1e-270 934.1 685 67.0
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 6.1e-270 934.1 687 67.1
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 7.9e-270 933.7 687 66.5
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 5.1e-269 931.0 690 65.9
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 1.1e-266 923.3 731 63.5
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 1.4e-266 922.9 688 65.7
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 1.0e-264 916.8 686 65.9
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 3.8e-264 914.8 686 64.4
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 3.2e-263 911.8 688 65.0
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 1.7e-259 899.4 684 64.8
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 1.7e-259 899.4 745 61.6
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 6.3e-259 897.5 661 66.7
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 5.3e-258 894.4 684 63.9
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 1.4e-255 886.3 684 63.7
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 3.2e-255 885.2 684 64.2
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 9.4e-255 883.6 686 63.8
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 3.6e-254 881.7 681 64.5
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 3.9e-253 878.2 689 62.8
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 7.4e-252 874.0 698 62.6
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 1.7e-251 872.8 685 63.2
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 3.7e-251 871.7 687 62.4
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 1.6e-249 866.3 686 61.7
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 2.6e-249 865.5 689 61.1
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 3.5e-249 865.1 684 63.3
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 4.5e-249 864.8 689 61.0
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 5.9e-249 864.4 684 62.7
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 1.7e-248 862.8 687 61.3
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 2.2e-248 862.4 682 62.0
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.1e-247 860.1 682 64.4
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 1.5e-247 859.8 684 62.7
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 5.5e-247 857.8 685 62.3
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 2.7e-246 855.5 686 61.7
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 5.2e-245 851.3 682 62.2
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 1.5e-244 849.7 686 62.2
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 1.5e-244 849.7 687 60.6
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 7.0e-242 840.9 679 61.1
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 1.7e-240 836.3 683 62.8
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.1e-239 833.6 689 60.8
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 1.5e-239 833.2 681 60.6
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 1.5e-239 833.2 683 60.3
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 2.7e-238 828.9 684 59.5
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 3.6e-238 828.6 693 59.6
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 1.8e-237 826.2 693 59.7
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 1.2e-236 823.5 709 58.4
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 1.3e-235 820.1 684 59.5
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 2.8e-235 818.9 690 59.6
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 4.8e-235 818.1 713 57.8
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 1.8e-234 816.2 693 58.4
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 2.0e-233 812.8 691 57.9
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 2.7e-233 812.4 690 59.1
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 3.8e-232 808.5 685 59.9
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 1.9e-231 806.2 734 55.6
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 4.7e-230 801.6 692 58.7
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 4.0e-229 798.5 709 57.8
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 3.7e-227 792.0 685 57.7
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 8.3e-227 790.8 693 57.7
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 3.1e-226 788.9 703 58.3
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 5.4e-226 788.1 710 56.2
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 2.3e-224 782.7 707 56.7
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 9.5e-223 777.3 684 58.8
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 3.6e-222 775.4 688 55.7
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 5.7e-220 768.1 566 64.8
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 5.7e-220 768.1 686 55.7
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 8.3e-219 764.2 527 70.2
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 1.3e-216 756.9 459 77.8
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 3.6e-214 748.8 684 57.2
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 8.9e-213 744.2 683 55.9
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 4.1e-210 735.3 686 54.4
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 8.1e-206 721.1 686 54.8
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 1.1e-205 720.7 553 64.2
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 5.8e-204 714.9 480 73.8
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 1.7e-200 703.4 543 65.7
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 3.7e-195 685.6 684 52.8
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 2.6e-180 636.3 697 49.4
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 1.5e-172 610.5 720 45.8
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 9.9e-172 607.8 540 56.7
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 3.8e-171 605.9 740 44.6
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 6.4e-171 605.1 755 44.5
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 5.1e-168 595.5 468 64.5
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-166 590.5 680 45.6
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.5e-164 583.9 601 51.4
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.9e-163 579.7 680 45.4
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-157 561.2 678 44.4
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 2.0e-156 557.0 465 61.5
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 3.4e-148 529.6 440 60.7
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 3.4e-148 529.6 440 60.7
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.3e-147 527.7 678 44.1
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 6.9e-141 505.4 313 75.4
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.2e-139 500.4 475 51.8
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 3.6e-137 493.0 278 81.3
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 7.4e-135 485.3 736 39.8
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.9e-130 470.7 678 39.1
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.6e-127 460.3 540 45.9
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 1.7e-123 447.6 363 62.5
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.3e-118 431.4 558 44.1
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 4.4e-103 379.8 315 63.2
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.2e-96 356.3 690 33.8
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.4e-94 349.4 616 37.5
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 4.7e-89 333.2 355 50.7
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 2.7e-84 317.4 419 41.1
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-79 302.0 488 37.5
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 2.9e-78 297.4 647 33.1
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 1.4e-72 278.5 380 42.6
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 1.2e-71 275.4 160 76.2
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 2.4e-64 251.1 270 46.7
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 4.0e-64 250.4 139 82.7
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-53 215.3 191 52.9
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 5.5e-53 213.4 718 28.3
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 3.5e-52 210.7 199 54.8
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 3.7e-49 200.7 164 62.8
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.8e-46 190.7 159 53.5
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 3.8e-46 190.7 159 57.9
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 1.1e-45 189.1 168 60.1
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 1.4e-45 188.7 109 79.8
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 7.1e-45 186.4 198 49.5
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 3.9e-43 180.6 182 53.8
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 5.3e-40 170.2 111 72.1
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 2.0e-39 168.3 395 30.1
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 8.5e-38 162.9 113 69.9
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 3.6e-36 157.5 273 35.5
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 4.5e-31 140.6 131 51.1
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 3.8e-30 137.5 89 68.5
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 1.8e-27 128.6 84 72.6
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.7e-25 120.9 387 28.4
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 1.4e-24 119.0 86 62.8
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 4.1e-24 117.5 83 73.5
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 9.1e-24 116.3 121 54.5
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.4e-21 109.0 137 43.1
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 1.6e-20 105.5 133 43.6
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 6.1e-20 103.6 84 60.7
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 7.7e-15 86.7 58 65.5
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 1.0e-14 86.3 95 45.3
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 3.7e-09 67.8 73 47.9
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-07 62.4 71 47.9


User provided reference genes

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