Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 1.8e-139 499.2 251 100.0
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 3.2e-107 392.1 251 80.9
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 5.2e-102 374.8 251 77.3
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 7.7e-45 184.9 252 48.4
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 1.3e-44 184.1 259 44.4
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 4.2e-43 179.1 259 44.8
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 1.4e-41 174.1 276 42.8
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 5.2e-41 172.2 272 41.9
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 2.0e-40 170.2 256 42.6
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 1.3e-39 167.5 254 42.5
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 4.8e-39 165.6 262 41.2
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 5.3e-38 162.2 258 43.4
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 2.0e-37 160.2 269 42.4
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 4.5e-37 159.1 262 44.3
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 5.9e-37 158.7 275 40.7
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 1.3e-36 157.5 269 41.6
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 1.7e-36 157.1 269 42.0
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 5.0e-36 155.6 275 40.0
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 8.5e-36 154.8 277 38.6
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 8.5e-36 154.8 268 39.9
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 1.5e-35 154.1 297 38.0
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 2.5e-35 153.3 271 39.9
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 2.5e-35 153.3 273 40.7
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 3.2e-35 152.9 254 42.5
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 4.2e-35 152.5 253 41.1
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 1.6e-34 150.6 263 38.0
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 2.1e-34 150.2 258 39.9
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 2.7e-34 149.8 255 42.4
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.7e-34 149.8 255 42.4
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.7e-34 149.8 255 42.4
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 2.3e-33 146.7 286 38.8
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 2.3e-33 146.7 317 36.3
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 4.0e-33 146.0 289 36.0
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 8.8e-33 144.8 255 42.0
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 8.8e-33 144.8 315 36.2
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 1.2e-32 144.4 263 38.8
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 1.2e-32 144.4 256 39.5
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 1.5e-32 144.1 253 42.7
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 3.4e-32 142.9 271 38.0
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 8.3e-31 138.3 267 35.6
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.1e-30 137.9 275 37.1
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.6e-29 134.0 299 33.8
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 1.6e-29 134.0 291 37.5
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 8.5e-28 128.3 275 34.9
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 2.5e-27 126.7 275 37.1
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 3.2e-27 126.3 267 37.1
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 5.5e-27 125.6 261 38.7
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 7.2e-27 125.2 296 32.4
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 9.4e-27 124.8 274 33.6
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 3.0e-25 119.8 207 41.1
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 4.0e-25 119.4 256 35.9
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 4.0e-25 119.4 301 31.6
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 4.0e-25 119.4 257 36.6
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 6.8e-25 118.6 301 31.9
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 2.0e-24 117.1 212 38.2
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 3.4e-24 116.3 257 35.8
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 4.4e-24 115.9 259 35.1
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 1.3e-23 114.4 261 33.0
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 2.8e-23 113.2 258 36.0
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 4.9e-23 112.5 259 36.7
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 5.4e-22 109.0 251 36.7
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 5.4e-22 109.0 251 36.7
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 1.2e-21 107.8 271 33.6
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 7.7e-21 105.1 314 29.9
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 1.7e-20 104.0 202 37.1
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 2.9e-20 103.2 274 32.5
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 2.9e-20 103.2 265 35.8
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 2.5e-19 100.1 226 37.2
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 9.5e-19 98.2 251 34.3
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 1.2e-18 97.8 267 30.7
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 1.2e-18 97.8 266 31.2
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 3.6e-18 96.3 255 33.7
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 6.1e-18 95.5 251 37.5
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 8.0e-18 95.1 251 31.5
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.0e-17 94.7 254 33.1
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 8.9e-17 91.7 251 33.5
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 8.9e-17 91.7 257 32.3
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 3.4e-16 89.7 259 30.5
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 4.4e-16 89.4 251 33.5
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 7.5e-16 88.6 251 31.1
Cc03_g10750 Coffea canephora HOM05D004739 ORTHO05D005784 9.8e-16 88.2 100 50.0
CSS0015609 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.2e-15 87.0 170 40.0
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 2.2e-15 87.0 289 30.1
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 6.4e-15 85.5 145 39.3
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 6.4e-15 85.5 259 33.2
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 6.4e-15 85.5 330 27.9
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 9.2e-14 81.6 199 34.7
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 1.2e-13 81.3 162 36.4
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.6e-13 80.9 158 34.8
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 7.8e-13 78.6 190 32.6
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 1.3e-12 77.8 254 31.9
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 5.0e-12 75.9 170 31.8
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 8.6e-12 75.1 191 34.6
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 1.9e-11 73.9 254 31.5
EL10Ac3g05590 Beta vulgaris HOM05D004739 ORTHO05D005784 3.3e-11 73.2 100 42.0
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 4.3e-11 72.8 254 31.5
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 9.5e-11 71.6 266 32.3
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.5e-11 71.6 258 28.3
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 1.2e-10 71.2 251 30.7
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-10 71.2 260 27.7
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 2.6e-08 63.5 251 29.1
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 4.4e-08 62.8 301 25.9
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 8.3e-07 58.5 49 59.2
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 8.3e-07 58.5 45 62.2
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 2.4e-06 57.0 45 55.6


User provided reference genes

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