Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G014910 Citrullus lanatus HOM05D004154 ORTHO05D004988 1.5e-146 523.1 323 100.0
MELO3C016306.2 Cucumis melo HOM05D004154 ORTHO05D004988 3.8e-121 438.7 317 87.1
CsaV3_4G006440 Cucumis sativus L. HOM05D004154 ORTHO05D004988 1.2e-119 433.7 317 86.1
Sed0017887 Sechium edule HOM05D004154 ORTHO05D004988 2.0e-117 426.4 322 85.4
CiPaw.11G123500 Carya illinoinensis HOM05D004154 ORTHO05D004988 5.5e-88 328.6 334 67.7
Cfa012835 Carpinus fangiana HOM05D004154 ORTHO05D004988 7.2e-88 328.2 339 66.1
PGR042G2687 Punica granatum HOM05D004154 ORTHO05D004988 2.8e-87 326.2 331 68.3
Prupe.5G115800 Prunus persica HOM05D004154 ORTHO05D004988 1.4e-83 313.9 339 63.7
Thecc.03G293700 Theobroma cacao HOM05D004154 ORTHO05D004988 2.3e-81 306.6 336 64.0
Duzib068G1416 Durio zibethinus HOM05D004154 ORTHO05D004988 2.9e-81 306.2 312 66.0
MD06G1103000 Malus domestica HOM05D004154 ORTHO05D004988 5.6e-80 302.0 339 59.3
Ca_17492_v3 Cicer arietinum L. HOM05D004154 ORTHO05D004988 2.8e-79 299.7 323 64.7
TAR374G1070 Trochodendron aralioides HOM05D004154 ORTHO05D004988 4.7e-79 298.9 330 63.9
Atru.chr2.763 Acer truncatum HOM05D004154 ORTHO05D004988 1.2e-77 294.3 337 62.9
Atru.chr9.2030 Acer truncatum HOM05D004154 ORTHO05D004988 1.2e-77 294.3 337 62.9
Atru.chr9.2037 Acer truncatum HOM05D004154 ORTHO05D001448 1.2e-77 294.3 337 62.9
Lj4g0021447 Lotus japonicus HOM05D004154 ORTHO05D004988 1.5e-77 293.9 325 64.9
Ciclev10023918m.g Citrus clementina HOM05D004154 ORTHO05D004988 2.0e-77 293.5 331 61.6
QL02p031322 Quercus lobata HOM05D004154 ORTHO05D004988 3.4e-77 292.7 336 60.4
Eucgr.E00847 Eucalyptus grandis HOM05D004154 ORTHO05D004988 1.3e-76 290.8 337 61.7
TWI60G1238 Tripterygium wilfordii HOM05D004154 ORTHO05D004988 1.3e-76 290.8 332 62.3
Medtr8g099305 Medicago truncatula HOM05D004154 ORTHO05D004988 2.9e-76 289.7 323 65.0
TPR.G3381 Trifolium pratense HOM05D004154 ORTHO05D004988 1.4e-75 287.3 323 65.0
Duzib205G2047 Durio zibethinus HOM05D004154 ORTHO05D004988 2.4e-75 286.6 335 60.9
SalBow1G2286 Salvia bowleyana HOM05D004154 ORTHO05D004988 4.1e-75 285.8 328 58.5
SalBow1G6205 Salvia bowleyana HOM05D004154 ORTHO05D004988 4.1e-75 285.8 328 59.1
Cpa.g.sc122.41 Carica papaya HOM05D004154 ORTHO05D004988 7.0e-75 285.0 313 61.7
Phvul.002G296700 Phaseolus vulgaris HOM05D004154 ORTHO05D004988 7.0e-75 285.0 299 67.9
Psat7g026240 Pisum sativum HOM05D004154 ORTHO05D004988 2.0e-74 283.5 328 64.9
Glyma.08G021700 Glycine max HOM05D004154 ORTHO05D004988 1.7e-73 280.4 318 63.2
PGSC0003DMG400012298 Solanum tuberosum HOM05D004154 ORTHO05D004988 1.7e-73 280.4 321 55.5
Potri.001G093700 Populus trichocarpa HOM05D004154 ORTHO05D004988 3.9e-73 279.3 318 61.0
Sabra01G0069600 Salix brachista HOM05D004154 ORTHO05D004988 5.0e-73 278.9 335 60.9
Sopen08g030360 Solanum pennellii HOM05D004154 ORTHO05D004988 5.0e-73 278.9 330 58.8
VMungo0251G3674 Vigna mungo HOM05D004154 ORTHO05D004988 5.0e-73 278.9 301 65.8
Hund11402 Selenicereus undatus HOM05D004154 ORTHO05D004988 6.6e-73 278.5 330 61.5
Nitab4.5_0010205g0030 Nicotiana tabacum HOM05D004154 ORTHO05D004988 8.6e-73 278.1 334 61.1
Potri.003G138000 Populus trichocarpa HOM05D004154 ORTHO05D004988 8.6e-73 278.1 334 58.4
Nn3g19070 Nelumbo nucifera HOM05D004154 ORTHO05D004988 1.1e-72 277.7 251 69.3
Nitab4.5_0000223g0250 Nicotiana tabacum HOM05D004154 ORTHO05D004988 3.3e-72 276.2 333 60.1
arahy.Tifrunner.gnm1.ann1.1D56YB Arachis hypogaea HOM05D004154 ORTHO05D004988 1.2e-71 274.2 334 60.8
AUR62019814 Chenopodium quinoa HOM05D004154 ORTHO05D004988 3.6e-71 272.7 332 58.1
Gorai.007G025500 Gossypium raimondii HOM05D004154 ORTHO05D004988 1.8e-70 270.4 314 62.1
Gohir.D11G023700 Gossypium hirsutum HOM05D004154 ORTHO05D004988 2.3e-70 270.0 314 61.8
arahy.Tifrunner.gnm1.ann1.Y783I6 Arachis hypogaea HOM05D004154 ORTHO05D004988 5.2e-70 268.9 335 60.0
Thhalv10028648m.g Eutrema salsugineum HOM05D004154 ORTHO05D004988 1.5e-69 267.3 311 58.8
Solyc08g082070.3 Solanum lycopersicum HOM05D004154 ORTHO05D004988 1.5e-69 267.3 316 59.8
AUR62010814 Chenopodium quinoa HOM05D004154 ORTHO05D004988 2.0e-69 266.9 318 60.1
Thhalv10025168m.g Eutrema salsugineum HOM05D004154 ORTHO05D004988 2.6e-69 266.5 306 56.9
COL.COLO4_21713 Corchorus olitorius HOM05D004154 ORTHO05D004988 4.4e-69 265.8 310 55.2
Manes.02G012100 Manihot esculenta HOM05D004154 ORTHO05D004988 5.8e-69 265.4 331 60.4
Aa31LG6G7020 Aethionema arabicum HOM05D004154 ORTHO05D004988 7.5e-69 265.0 306 59.5
Sp7g21760 Schrenkiella parvula HOM05D004154 ORTHO05D004988 7.5e-69 265.0 311 58.5
AT4G23800 Arabidopsis thaliana HOM05D004154 ORTHO05D004988 1.7e-68 263.8 314 58.9
Glyma.05G215500 Glycine max HOM05D004154 ORTHO05D004988 2.9e-68 263.1 318 61.0
AL7G29550 Arabidopsis lyrata HOM05D004154 ORTHO05D004988 6.4e-68 261.9 314 57.6
Gohir.A11G024000 Gossypium hirsutum HOM05D004154 ORTHO05D004988 6.4e-68 261.9 315 60.3
C01p19010 Brassica napus HOM05D004154 ORTHO05D004988 3.2e-67 259.6 314 55.1
BolC1t01827H Brassica oleracea HOM05D004154 ORTHO05D004988 3.2e-67 259.6 314 55.1
CAN.G532.100 Capsicum annuum HOM05D004154 ORTHO05D004988 3.2e-67 259.6 284 60.6
BcaC09g50947 Brassica carinata HOM05D004154 ORTHO05D004988 5.4e-67 258.8 313 54.6
Lalb_Chr05g0224221 Lupinus albus HOM05D004154 ORTHO05D004988 5.4e-67 258.8 312 59.9
THA.LOC104806434 Tarenaya hassleriana HOM05D004154 ORTHO05D004988 1.2e-66 257.7 265 60.8
Cc08_g15820 Coffea canephora HOM05D004154 ORTHO05D004988 1.6e-66 257.3 351 50.4
A01p15110 Brassica napus HOM05D004154 ORTHO05D004988 2.7e-66 256.5 315 52.7
Carub.0007s1732 Capsella rubella HOM05D004154 ORTHO05D004988 6.0e-66 255.4 313 57.5
CARHR231190 Cardamine hirsuta HOM05D004154 ORTHO05D004988 6.0e-66 255.4 311 57.2
A09p28160 Brassica napus HOM05D004154 ORTHO05D004988 7.8e-66 255.0 312 56.7
vmacro13908 Vaccinium macrocarpon HOM05D004154 ORTHO05D004988 1.3e-65 254.2 322 55.6
BraA09t38379Z Brassica rapa HOM05D004154 ORTHO05D004988 2.3e-65 253.4 312 56.4
BcaNung01086 Brassica carinata HOM05D004154 ORTHO05D004988 3.0e-65 253.1 273 57.5
BcaC04g21100 Brassica carinata HOM05D004154 ORTHO05D004988 1.1e-64 251.1 312 57.4
C09p35690 Brassica napus HOM05D004154 ORTHO05D004988 1.1e-64 251.1 312 57.4
BolC9t56405H Brassica oleracea HOM05D004154 ORTHO05D004988 1.1e-64 251.1 312 57.4
SGA_v2.0_scaffold173G39085 Striga asiatica HOM05D004154 ORTHO05D004988 3.3e-64 249.6 328 57.3
BraA01t01449Z Brassica rapa HOM05D004154 ORTHO05D004988 7.3e-64 248.4 316 51.9
PSO135G0371 Papaver somniferum HOM05D004154 ORTHO05D004988 1.2e-63 247.7 329 51.4
PSO384G3063 Papaver somniferum HOM05D004154 ORTHO05D004988 2.1e-63 246.9 329 51.4
AT4G11080 Arabidopsis thaliana HOM05D004154 ORTHO05D004988 3.6e-63 246.1 310 53.9
Oeu061093.1 Olea europaea HOM05D004154 ORTHO05D004988 5.2e-62 242.3 331 54.1
Aa31LG5G23780 Aethionema arabicum HOM05D004154 ORTHO05D004988 8.9e-62 241.5 313 54.3
CSS0019694 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 8.9e-62 241.5 320 57.8
Rhsim07G0083500 Rhododendron simsii HOM05D004154 ORTHO05D004988 8.9e-62 241.5 322 54.0
ECA234G2690 Erigeron canadensis HOM05D004154 ORTHO05D004988 1.2e-61 241.1 326 49.1
Peaxi162Scf00074g01143 Petunia axillaris HOM05D004154 ORTHO05D004988 2.6e-61 240.0 311 59.2
FAN18G2617 Fragaria x ananassa HOM05D004154 ORTHO05D004988 5.8e-61 238.8 188 68.6
FAN18G0035 Fragaria x ananassa HOM05D004154 ORTHO05D004988 7.5e-61 238.4 337 55.8
Sp6g06370 Schrenkiella parvula HOM05D004154 ORTHO05D004988 2.2e-60 236.9 310 54.2
CANSAT21G2399 Cannabis sativa HOM05D004154 ORTHO05D004988 2.9e-60 236.5 187 72.7
FvH4_5g04120 Fragaria vesca HOM05D004154 ORTHO05D004988 2.9e-60 236.5 188 68.6
Aqoxy7G00145 Aquilegia oxysepala HOM05D004154 ORTHO05D004988 4.9e-60 235.7 310 54.2
Carub.0006s2985 Capsella rubella HOM05D004154 ORTHO05D004988 1.1e-59 234.6 311 54.7
GSVIVG01019504001 Vitis vinifera HOM05D004154 ORTHO05D004988 1.4e-59 234.2 185 68.6
FAN04G1279 Fragaria x ananassa HOM05D004154 ORTHO05D004988 5.4e-59 232.3 185 68.1
FAN04G2754 Fragaria x ananassa HOM05D004154 ORTHO05D004988 5.4e-59 232.3 185 68.1
FAN08G1247 Fragaria x ananassa HOM05D004154 ORTHO05D004988 3.5e-58 229.6 185 70.3
EL10Ac5g12892 Beta vulgaris HOM05D004154 ORTHO05D004988 4.6e-58 229.2 332 56.9
HanXRQChr17g0535161 Helianthus annuus HOM05D004154 ORTHO05D004988 6.0e-58 228.8 334 47.0
MSTRG.25659 Avicennia marina HOM05D004154 ORTHO05D004988 3.9e-57 226.1 334 53.9
DCAR_027717 Daucus carota HOM05D004154 ORTHO05D004988 8.6e-57 224.9 323 53.3
Migut.A00676 Erythranthe guttata HOM05D004154 ORTHO05D004988 1.1e-56 224.6 330 54.2
Zm00001eb238060 Zea mays HOM05D004154 ORTHO05D004988 7.3e-56 221.9 244 60.7
AL6G45220 Arabidopsis lyrata HOM05D004154 ORTHO05D004988 9.5e-56 221.5 237 60.3
Haze_08653 Corylus avellana HOM05D004154 ORTHO05D004988 1.6e-55 220.7 315 47.0
CARHR255520 Cardamine hirsuta HOM05D004154 ORTHO05D004988 2.1e-55 220.3 311 47.9
FAN13G2696 Fragaria x ananassa HOM05D004154 ORTHO05D004988 6.2e-55 218.8 331 54.4
Dinv38854 Davidia involucrata HOM05D000337 ORTHO05D000297 9.9e-53 211.5 174 66.1
Sabra13G0046900 Salix brachista HOM05D004154 ORTHO05D004988 3.8e-52 209.5 190 67.9
unitig_32.g11609 Utricularia gibba HOM05D004154 ORTHO05D004988 1.0e-49 201.4 333 48.0
Sabra05G0040500 Salix brachista HOM05D004154 ORTHO05D004988 1.3e-49 201.1 190 64.7
MBI07_g24338_MAGBIO Magnolia biondii HOM05D004154 ORTHO05D004988 3.0e-49 199.9 328 49.1
Sabra17G0001600 Salix brachista HOM05D004154 ORTHO05D004988 3.0e-49 199.9 189 66.1
SEGI_25080 Sequoiadendron giganteum HOM05D004154 ORTHO05D004988 6.6e-49 198.7 328 50.0
SabraUnG0000800 Salix brachista HOM05D004154 ORTHO05D004988 2.5e-48 196.8 159 74.8
RcHm_v2.0_Chr7g0195371 Rosa chinensis HOM05D004154 ORTHO05D004988 9.6e-48 194.9 338 50.0
CDE04G1588 Ceratophyllum demersum HOM05D004154 ORTHO05D004988 2.6e-45 186.8 302 47.4
Sabra11G0120200 Salix brachista HOM05D004154 ORTHO05D004988 7.6e-45 185.3 152 75.0
Sabra10G0054600 Salix brachista HOM05D004154 ORTHO05D004988 3.2e-43 179.9 156 70.5
Lj8A210T88 Lonicera japonica HOM05D004154 ORTHO05D004988 4.2e-43 179.5 298 52.0
CDE03G0409 Ceratophyllum demersum HOM05D004154 ORTHO05D004988 7.1e-43 178.7 315 46.0
Manes.17G117281 Manihot esculenta HOM05D004154 ORTHO05D004988 7.1e-43 178.7 287 53.0
ATR1100G049 Amborella trichopoda HOM05D004154 ORTHO05D004988 2.1e-42 177.2 182 58.2
Pp3c11_8530 Physcomitrium patens HOM05D004154 ORTHO05D004988 3.5e-42 176.4 279 40.5
Glyma.01G060600 Glycine max HOM05D004154 ORTHO05D004988 1.0e-41 174.9 139 68.3
Lsat_1_v5_gn_3_10260 Lactuca sativa HOM05D004154 ORTHO05D004988 4.3e-40 169.5 331 40.5
MD14G1121900 Malus domestica HOM05D004154 ORTHO05D004988 1.1e-38 164.9 133 66.9
Sed0012262 Sechium edule HOM05D004154 ORTHO05D004988 1.4e-38 164.5 278 52.5
Sc07g0009970 Simmondsia chinensis HOM05D004154 ORTHO05D004988 1.7e-36 157.5 326 47.2
Mapoly0026s0138 Marchantia polymorpha HOM05D004154 ORTHO05D004988 2.9e-36 156.8 260 43.5
Pp3c7_20570 Physcomitrium patens HOM05D004154 ORTHO05D004988 2.4e-35 153.7 279 37.6
Sabra19G0042900 Salix brachista HOM05D004154 ORTHO05D004988 5.4e-35 152.5 157 55.4
PSO063G0915 Papaver somniferum HOM05D004154 ORTHO05D004988 2.1e-31 140.6 140 52.9
PSO729G0146 Papaver somniferum HOM05D004154 ORTHO05D004988 1.5e-29 134.4 98 70.4
ATR0594G018 Amborella trichopoda HOM05D004154 ORTHO05D004988 4.5e-29 132.9 148 54.7
SEGI_34551 Sequoiadendron giganteum HOM05D004154 ORTHO05D004988 4.5e-29 132.9 226 38.1
SMO367G1063 Selaginella moellendorffii HOM05D004154 ORTHO05D004988 4.2e-27 126.3 259 33.2
Os02g0258250 Oryza sativa ssp. japonica HOM05D004154 ORTHO05D004988 2.2e-20 104.0 123 46.3
BcaB01g01584 Brassica carinata HOM05D004154 ORTHO05D004988 8.4e-20 102.1 122 49.2
SEGI_07912 Sequoiadendron giganteum HOM05D004154 ORTHO05D012852 4.6e-18 96.3 218 39.9
PGSC0003DMG400012086 Solanum tuberosum HOM05D004154 ORTHO05D004988 1.1e-14 85.1 75 58.7
PSO339G6280 Papaver somniferum HOM05D004154 ORTHO05D004988 2.6e-13 80.5 128 39.8
Ca_12802_v3 Cicer arietinum L. HOM05D004154 ORTHO05D004988 3.2e-11 73.6 173 47.4
AagrBONN_evm.TU.Sc2ySwM_117.3685 Anthoceros agrestis HOM05D004154 ORTHO05D004988 1.6e-10 71.2 129 34.9
Ca_19297_v3 Cicer arietinum L. HOM05D004154 ORTHO05D004988 2.5e-08 63.9 76 81.6
AL6G14170 Arabidopsis lyrata HOM05D004154 ORTHO05D004988 1.8e-06 57.8 40 60.0
CBR_g20179 Chara braunii HOM05D003321 ORTHO05D005161 1.8e-06 57.8 81 42.0
BcaB01g00238 Brassica carinata HOM05D004154 ORTHO05D004988 4.1e-06 56.6 72 47.2


User provided reference genes

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