Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 8.1e-143 510.4 255 100.0
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 8.7e-137 490.3 254 96.9
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 4.9e-132 474.6 283 87.3
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 6.2e-127 457.6 255 91.0
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 1.7e-111 406.4 260 81.5
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 1.7e-111 406.4 260 82.3
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 1.1e-110 403.7 258 81.8
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 5.3e-110 401.4 258 81.4
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 5.3e-110 401.4 258 81.0
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 1.2e-109 400.2 250 80.4
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 2.0e-109 399.4 259 79.5
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 4.5e-109 398.3 258 80.2
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 5.9e-109 397.9 251 81.3
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.0e-108 397.1 259 81.5
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.7e-108 396.4 259 80.3
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 2.2e-108 396.0 258 80.2
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 2.9e-108 395.6 248 81.5
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 3.8e-108 395.2 252 79.0
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 8.5e-108 394.0 252 78.2
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 1.9e-107 392.9 258 81.0
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 1.9e-107 392.9 258 78.3
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 2.5e-107 392.5 250 80.0
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 3.2e-107 392.1 248 81.0
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 5.5e-107 391.3 262 77.9
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 9.4e-107 390.6 256 79.3
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 9.4e-107 390.6 251 80.5
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 3.6e-106 388.7 233 85.0
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 3.6e-106 388.7 250 80.0
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 6.7e-105 384.4 258 77.9
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 8.8e-105 384.0 229 84.3
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 8.8e-105 384.0 255 79.2
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 1.1e-104 383.6 239 82.0
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 3.3e-104 382.1 250 78.8
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 5.7e-104 381.3 259 76.4
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 7.4e-104 380.9 237 80.6
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 9.7e-104 380.6 258 77.5
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 2.8e-103 379.0 258 76.4
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 4.8e-103 378.3 243 77.4
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 1.1e-102 377.1 227 82.8
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 1.4e-102 376.7 252 77.0
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 1.4e-102 376.7 259 75.7
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 2.4e-102 375.9 249 77.5
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 3.1e-102 375.6 251 75.3
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 5.3e-102 374.8 255 76.5
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 1.2e-101 373.6 253 76.7
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 1.5e-101 373.2 253 77.5
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 3.5e-101 372.1 249 77.1
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 3.5e-101 372.1 253 78.3
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 4.5e-101 371.7 231 79.7
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 5.9e-101 371.3 257 74.3
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 7.7e-101 370.9 225 82.2
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 1.7e-100 369.8 271 73.4
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 2.9e-100 369.0 243 77.8
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 5.0e-100 368.2 261 73.2
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 8.5e-100 367.5 261 74.7
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 8.5e-100 367.5 238 77.7
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 7.2e-99 364.4 260 77.3
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 9.4e-99 364.0 253 75.5
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 1.2e-98 363.6 227 80.2
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 1.6e-98 363.2 254 75.2
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 1.6e-98 363.2 260 77.3
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 2.7e-98 362.5 257 74.7
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.0e-97 360.5 251 75.7
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 5.2e-97 358.2 259 73.7
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 8.8e-97 357.5 258 71.7
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 8.8e-97 357.5 251 72.5
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 1.1e-96 357.1 229 82.1
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 1.1e-96 357.1 257 72.4
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.3e-95 353.6 258 70.9
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 2.8e-95 352.4 250 70.8
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 2.8e-95 352.4 248 72.6
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 6.3e-95 351.3 258 70.5
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 1.1e-94 350.5 257 70.4
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 1.4e-94 350.1 237 74.3
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.8e-94 349.7 258 69.8
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.0e-92 344.0 258 69.0
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 1.1e-91 340.5 257 69.3
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 2.5e-91 339.3 250 69.2
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 3.2e-91 339.0 253 71.1
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 1.8e-89 333.2 251 71.7
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 4.0e-89 332.0 232 71.6
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 2.0e-88 329.7 244 69.7
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 2.6e-88 329.3 250 69.2
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 2.6e-88 329.3 238 69.3
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 2.6e-88 329.3 216 75.5
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 4.4e-88 328.6 233 73.8
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 4.4e-88 328.6 204 82.8
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 5.7e-88 328.2 250 70.8
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 2.2e-87 326.2 252 70.2
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 2.2e-87 326.2 250 68.4
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 2.8e-87 325.9 232 72.4
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 4.8e-87 325.1 255 67.1
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 8.3e-87 324.3 233 73.0
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 1.8e-86 323.2 233 73.0
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 2.4e-86 322.8 250 67.6
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 7.0e-86 321.2 209 78.9
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 3.5e-85 318.9 243 70.0
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 2.2e-84 316.2 237 67.5
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 3.0e-81 305.8 270 62.2
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 3.8e-76 288.9 169 84.6
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 4.7e-74 282.0 176 81.8
TPR.G39766 Trifolium pratense HOM05D005962 ORTHO05D007325 7.5e-72 274.6 185 76.8
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 9.2e-70 267.7 139 89.2
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 4.5e-69 265.4 170 77.6
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 5.9e-69 265.0 165 78.8
Cfa019373 Carpinus fangiana HOM05D005962 ORTHO05D007325 2.9e-68 262.7 171 80.7
Lj5A50T68 Lonicera japonica HOM05D005962 ORTHO05D007325 4.9e-63 245.4 171 76.6
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 1.4e-62 243.8 184 64.1
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 1.4e-62 243.8 245 55.1
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 2.0e-61 240.0 249 55.4
MD14G1079700 Malus domestica HOM05D005962 ORTHO05D007325 1.3e-60 237.3 175 73.7
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 3.3e-59 232.6 187 62.6
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 1.1e-43 181.0 255 44.3
Medtr0361s0030 Medicago truncatula HOM05D005962 ORTHO05D007325 3.5e-37 159.5 103 77.7
Lj5C50T14 Lonicera japonica HOM05D005962 ORTHO05D007325 2.6e-32 143.3 88 76.1
SEGI_18792 Sequoiadendron giganteum HOM05D005962 ORTHO05D007325 2.6e-32 143.3 80 83.8
Lj3g0016976 Lotus japonicus HOM05D005962 ORTHO05D007325 5.8e-32 142.1 185 50.8
QL05p018100 Quercus lobata HOM05D005962 ORTHO05D007325 7.6e-32 141.7 92 78.3
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 3.9e-28 129.4 216 42.1
Cfa019374 Carpinus fangiana HOM05D005962 ORTHO05D007325 7.3e-27 125.2 72 80.6
Lsat_1_v5_gn_2_99820 Lactuca sativa HOM05D005962 ORTHO05D007325 2.8e-26 123.2 90 70.0
TAR624G0741 Trochodendron aralioides HOM05D005962 ORTHO05D007325 2.9e-23 113.2 143 51.7
RcHm_v2.0_Chr5g0064381 Rosa chinensis HOM05D005962 ORTHO05D007325 3.2e-22 109.8 85 61.2
TAR623G1541 Trochodendron aralioides HOM05D005962 ORTHO05D007325 1.2e-21 107.8 59 86.4
Ah.04g150130 Amaranthus hybridus HOM05D000535 ORTHO05D000427 1.1e-19 101.3 90 61.1
Nitab4.5_0008212g0010 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.1e-17 94.7 198 39.4
PRCOL_00006676 Prasinoderma coloniale HOM05D001184 ORTHO05D008450 2.0e-16 90.5 130 38.5
Zm00001eb084330 Zea mays HOM05D005962 ORTHO05D007325 2.6e-16 90.1 65 64.6
Zm00001eb192830 Zea mays HOM05D005962 ORTHO05D007325 1.7e-15 87.4 58 67.2
Pp3c7_2870 Physcomitrium patens HOM05D005962 ORTHO05D007325 5.5e-14 82.4 229 32.8
TAR636G3265 Trochodendron aralioides HOM05D005962 ORTHO05D007325 1.6e-13 80.9 47 74.5
BraA09t39590Z Brassica rapa HOM05D002393 ORTHO05D002845 6.9e-09 65.5 58 58.6
Cpa.g.c26718.1 Carica papaya HOM05D005962 ORTHO05D007325 5.8e-08 62.4 53 60.4
Dinv30417 Davidia involucrata HOM05D000106 ORTHO05D000160 2.2e-07 60.5 59 59.3
GSVIVG01016925001 Vitis vinifera HOM05D000106 ORTHO05D000160 9.3e-06 55.1 43 58.1


User provided reference genes

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