Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 8.7e-182 640.2 328 100.0
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 9.1e-163 577.0 326 90.5
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 2.7e-159 565.5 327 89.3
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 1.2e-138 496.9 329 79.3
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 5.6e-136 488.0 326 81.0
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 3.2e-75 286.2 340 52.1
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 8.7e-73 278.1 338 51.2
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 8.2e-71 271.6 336 50.6
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 4.1e-70 269.2 337 52.8
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 6.9e-70 268.5 336 50.9
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 1.2e-69 267.7 338 49.1
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 1.5e-69 267.3 336 51.2
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 3.8e-68 262.7 316 51.9
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 5.0e-68 262.3 341 48.1
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 6.5e-68 261.9 316 52.2
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 1.9e-67 260.4 339 50.4
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.5e-67 260.0 335 48.1
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 7.2e-67 258.5 342 48.8
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.2e-66 257.7 334 49.4
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 2.1e-66 256.9 335 46.9
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 4.6e-66 255.8 334 49.1
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.8e-65 253.8 335 47.8
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.8e-65 253.8 335 47.8
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 1.8e-65 253.8 348 48.9
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 2.3e-65 253.4 335 47.8
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.5e-64 250.8 333 46.8
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 2.5e-64 250.0 330 48.2
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 2.8e-63 246.5 334 48.5
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 2.8e-63 246.5 337 47.5
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 6.3e-63 245.4 330 48.8
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 1.4e-62 244.2 335 46.3
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 1.8e-62 243.8 338 47.3
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 2.4e-62 243.4 339 47.8
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 4.1e-62 242.7 326 47.2
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 4.1e-62 242.7 359 46.0
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 3.4e-61 239.6 335 47.5
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 7.7e-61 238.4 334 47.3
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.0e-60 238.0 334 47.6
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.3e-60 237.7 323 48.0
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 1.3e-60 237.7 337 46.3
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 1.3e-60 237.7 327 45.3
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 1.7e-60 237.3 340 44.1
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 2.2e-60 236.9 333 44.1
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 3.8e-60 236.1 331 45.9
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 8.5e-60 235.0 329 47.1
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 1.1e-59 234.6 336 44.9
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 3.2e-59 233.0 343 45.5
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 4.2e-59 232.6 334 47.6
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 1.2e-58 231.1 332 46.1
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 1.2e-58 231.1 333 45.3
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 1.6e-58 230.7 334 44.0
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 7.9e-58 228.4 339 44.2
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 1.8e-57 227.3 337 41.5
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 6.7e-57 225.3 338 44.4
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 1.1e-56 224.6 324 44.1
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 1.1e-56 224.6 321 43.3
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 1.5e-56 224.2 337 44.5
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 4.4e-56 222.6 334 46.7
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 7.4e-56 221.9 336 43.5
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 2.2e-55 220.3 330 44.5
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 2.8e-55 219.9 346 44.5
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 2.8e-55 219.9 342 44.7
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 3.7e-55 219.5 337 44.5
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 6.3e-55 218.8 326 42.6
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 1.8e-54 217.2 317 46.7
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 3.1e-54 216.5 342 43.9
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 3.1e-54 216.5 342 44.4
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 4.1e-54 216.1 334 40.1
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 5.3e-54 215.7 341 44.6
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 5.3e-54 215.7 332 44.0
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 6.9e-54 215.3 325 46.2
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 6.9e-54 215.3 339 41.0
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 9.1e-54 214.9 340 42.9
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 1.2e-53 214.5 330 42.1
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.5e-53 214.2 334 44.0
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 2.0e-53 213.8 342 44.2
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 2.0e-53 213.8 337 40.9
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 3.4e-53 213.0 341 42.5
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 3.4e-53 213.0 333 44.1
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 4.5e-53 212.6 343 43.1
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 1.0e-52 211.5 339 40.4
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 1.3e-52 211.1 342 43.6
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 1.3e-52 211.1 342 43.6
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 1.3e-52 211.1 333 42.9
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 2.2e-52 210.3 326 44.2
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 3.8e-52 209.5 339 40.7
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 3.8e-52 209.5 337 40.7
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 5.0e-52 209.1 350 44.0
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 8.5e-52 208.4 342 43.0
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 8.5e-52 208.4 336 42.0
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 1.1e-51 208.0 342 42.4
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 2.5e-51 206.8 338 44.1
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 2.5e-51 206.8 336 42.9
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 7.2e-51 205.3 339 41.3
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 1.6e-50 204.1 343 41.1
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 2.1e-50 203.8 343 42.0
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 2.7e-50 203.4 340 41.5
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 6.1e-50 202.2 337 41.2
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 1.0e-49 201.4 320 42.8
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 1.1e-48 198.0 344 39.0
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 4.4e-48 196.1 337 42.1
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 1.1e-46 191.4 339 41.9
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 1.8e-46 190.7 337 40.1
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 3.5e-45 186.4 342 40.9
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 7.7e-45 185.3 343 40.2
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 2.2e-44 183.7 334 41.3
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 3.8e-44 183.0 328 43.3
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 2.5e-43 180.3 333 38.4
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 9.4e-43 178.3 343 41.1
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.2e-42 177.9 370 38.4
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 1.2e-42 177.9 340 39.7
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 1.4e-41 174.5 313 40.3
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.4e-41 174.5 320 42.2
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 6.7e-41 172.2 328 38.1
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 3.3e-40 169.9 352 38.9
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 3.3e-40 169.9 333 40.2
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.7e-39 166.4 338 37.0
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 4.1e-38 162.9 335 40.3
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 9.1e-38 161.8 317 37.9
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 1.7e-36 157.5 329 35.9
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 2.9e-36 156.8 339 38.9
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 7.2e-35 152.1 328 36.0
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 6.8e-33 145.6 338 36.1
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 2.6e-32 143.7 337 34.4
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 1.3e-31 141.4 300 36.3
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 6.3e-31 139.0 323 36.8
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 1.8e-30 137.5 361 34.6
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 2.4e-30 137.1 263 38.0
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 4.1e-30 136.3 322 35.4
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 1.5e-27 127.9 338 36.4
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 2.8e-26 123.6 317 35.6
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 2.8e-23 113.6 321 35.2
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 1.1e-22 111.7 307 32.6
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 5.0e-20 102.8 313 32.6
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 3.3e-19 100.1 354 30.8
Gorai.003G083400 Gossypium raimondii HOM05D003995 ORTHO05D004800 2.3e-17 94.0 93 53.8
Gohir.D03G024850 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.2e-15 87.4 93 50.5
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.2e-13 81.6 153 39.9
Actinidia39149 Actinidia chinensis HOM05D003995 ORTHO05D004800 5.9e-13 79.3 154 38.3
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 5.8e-08 62.8 358 26.0


User provided reference genes

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