Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 3.3e-239 831.2 406 100.0
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 5.9e-204 714.1 410 86.3
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 1.2e-196 689.9 384 89.3
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 5.9e-188 661.0 410 81.7
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 1.3e-187 659.8 405 81.0
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 2.3e-187 659.1 408 80.1
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 6.1e-185 651.0 406 80.5
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 8.0e-185 650.6 343 90.4
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 1.4e-184 649.8 407 79.9
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 3.0e-184 648.7 354 87.6
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 4.0e-184 648.3 387 82.7
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 6.8e-184 647.5 408 79.4
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 8.9e-184 647.1 343 88.9
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 1.2e-183 646.7 343 89.2
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 2.6e-183 645.6 408 80.1
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 3.4e-183 645.2 417 77.9
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 3.4e-183 645.2 406 79.6
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 9.8e-183 643.7 341 88.6
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 1.7e-182 642.9 342 88.6
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 2.2e-182 642.5 344 89.2
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 2.8e-182 642.1 342 88.3
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 6.3e-182 641.0 410 78.3
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 6.3e-182 641.0 342 89.5
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 8.3e-182 640.6 345 88.1
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 1.1e-181 640.2 406 79.8
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 1.1e-181 640.2 408 78.9
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.8e-181 639.4 406 78.8
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 1.8e-181 639.4 411 79.1
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 1.8e-181 639.4 361 85.6
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 2.4e-181 639.0 390 80.8
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 3.1e-181 638.6 403 79.4
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 3.1e-181 638.6 405 77.0
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 4.1e-181 638.3 344 88.7
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 5.4e-181 637.9 400 79.5
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 9.2e-181 637.1 414 76.1
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 9.2e-181 637.1 390 80.3
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 1.2e-180 636.7 414 76.8
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 1.2e-180 636.7 339 88.8
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 2.7e-180 635.6 340 89.1
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 3.5e-180 635.2 406 79.3
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 3.5e-180 635.2 340 89.1
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 7.8e-180 634.0 406 77.8
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 7.8e-180 634.0 371 83.6
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 7.8e-180 634.0 411 77.1
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 1.3e-179 633.3 342 87.1
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 2.3e-179 632.5 408 78.2
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.9e-179 632.1 408 78.2
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 5.0e-179 631.3 405 78.5
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 6.6e-179 630.9 349 86.0
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 8.6e-179 630.6 408 77.9
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 1.1e-178 630.2 419 77.1
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 1.1e-178 630.2 346 87.0
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.5e-178 629.8 402 78.4
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 1.9e-178 629.4 342 86.5
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 1.9e-178 629.4 386 80.8
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 2.5e-178 629.0 402 78.1
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 2.5e-178 629.0 380 80.3
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 2.5e-178 629.0 413 77.5
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 3.3e-178 628.6 404 77.0
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 3.3e-178 628.6 406 78.1
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 3.3e-178 628.6 342 86.8
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 1.2e-177 626.7 386 79.3
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 1.6e-177 626.3 406 77.6
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 2.1e-177 625.9 363 82.9
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 2.1e-177 625.9 387 79.3
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 2.1e-177 625.9 395 78.2
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 2.1e-177 625.9 403 77.7
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 2.8e-177 625.5 380 79.2
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 2.8e-177 625.5 380 79.2
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 4.7e-177 624.8 377 80.6
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 1.4e-176 623.2 340 86.5
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 1.8e-176 622.9 411 76.4
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 2.3e-176 622.5 406 76.4
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 3.0e-176 622.1 395 77.2
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 5.2e-176 621.3 348 85.9
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 5.2e-176 621.3 341 87.4
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 1.2e-175 620.2 406 75.9
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 2.6e-175 619.0 343 85.4
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 2.6e-175 619.0 400 77.0
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 4.4e-175 618.2 395 76.7
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 4.4e-175 618.2 343 87.2
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 1.3e-174 616.7 343 85.1
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 2.2e-174 615.9 367 80.7
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 3.7e-174 615.1 390 77.7
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 4.9e-174 614.8 397 76.1
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 6.4e-174 614.4 378 78.6
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 1.1e-173 613.6 390 77.4
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.8e-173 612.8 396 76.3
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 1.2e-172 610.1 404 75.2
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 2.7e-172 609.0 341 84.8
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 6.0e-172 607.8 462 68.4
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.3e-171 605.9 344 83.4
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 2.3e-171 605.9 439 71.8
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 2.3e-171 605.9 308 91.9
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 3.9e-171 605.1 340 85.3
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 3.9e-171 605.1 366 81.1
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 1.5e-170 603.2 408 74.3
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 1.9e-170 602.8 415 73.7
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 3.3e-170 602.1 349 84.2
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 2.1e-169 599.4 409 73.6
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.6e-169 598.6 301 92.0
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 8.0e-169 597.4 309 89.6
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 8.0e-169 597.4 389 77.1
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 8.9e-168 594.0 347 82.7
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 7.5e-167 590.9 318 88.1
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.9e-165 586.3 338 83.4
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 3.6e-161 572.0 319 85.0
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 1.8e-160 569.7 386 73.3
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 5.2e-160 568.2 399 72.7
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 1.2e-159 567.0 320 84.4
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 2.0e-159 566.2 320 84.4
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 1.9e-157 559.7 412 71.8
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.6e-156 556.6 394 71.1
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 3.9e-155 552.0 498 59.4
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 4.3e-154 548.5 550 55.1
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 3.1e-152 542.3 342 74.0
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 4.4e-151 538.5 343 73.8
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.9e-150 535.8 342 73.4
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 2.1e-148 529.6 559 54.7
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 2.3e-147 526.2 303 79.2
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 3.3e-146 522.3 404 64.4
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 6.9e-136 488.0 243 90.5
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 4.9e-134 481.9 281 81.1
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 9.3e-133 477.6 350 67.4
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 6.4e-126 454.9 409 62.6
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 9.3e-125 451.1 307 67.8
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.6e-124 450.3 371 59.6
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.2e-116 424.1 244 83.2
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 1.4e-112 410.6 252 81.3
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 2.2e-105 386.7 212 85.4
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 4.8e-105 385.6 350 56.9
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 8.2e-105 384.8 293 68.9
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 4.5e-103 379.0 405 50.4
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 5.7e-98 362.1 216 80.6
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 8.0e-92 341.7 208 77.9
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 8.2e-89 331.6 288 54.2
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 1.3e-81 307.8 188 79.8
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 6.1e-68 262.3 338 42.3
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 2.3e-67 260.4 127 94.5
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 5.2e-67 259.2 319 42.6
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 6.8e-67 258.8 310 44.2
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 8.9e-67 258.5 357 40.1
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 3.4e-66 256.5 335 43.0
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 4.7e-60 236.1 321 40.8
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 5.4e-56 222.6 179 65.4
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 3.5e-55 219.9 335 39.7
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 1.4e-51 208.0 247 42.1
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.7e-46 191.0 114 82.5
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 6.6e-46 189.1 155 63.9
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 8.7e-30 135.6 92 75.0
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 6.4e-25 119.4 165 45.5
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 3.2e-24 117.1 55 90.9
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 4.3e-21 106.7 62 85.5
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 5.4e-16 89.7 93 58.1
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 7.1e-16 89.4 165 40.6
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 4.6e-15 86.7 49 79.6
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 2.3e-14 84.3 69 66.7
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 3.7e-12 77.0 33 93.9
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 4.5e-10 70.1 34 82.4
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 1.8e-06 58.2 31 77.4


User provided reference genes

Program Settings