Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 1.5e-141 506.1 245 100.0
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 1.1e-133 479.9 245 93.5
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 2.0e-130 469.2 245 92.2
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 1.3e-124 449.9 247 88.3
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 1.1e-109 400.2 243 80.7
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 4.5e-90 335.1 245 68.2
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 8.5e-89 330.9 246 66.7
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 1.9e-88 329.7 245 68.2
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 3.2e-88 328.9 245 69.8
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 2.7e-87 325.9 309 56.3
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 6.1e-87 324.7 245 66.9
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 3.3e-85 318.9 244 67.6
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 6.3e-84 314.7 241 66.8
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 6.3e-84 314.7 245 65.3
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 6.3e-84 314.7 243 65.8
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 3.4e-82 308.9 242 66.5
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 7.7e-82 307.8 245 66.5
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 2.9e-81 305.8 242 66.9
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 2.9e-81 305.8 241 65.1
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 1.1e-80 303.9 242 66.5
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 1.4e-80 303.5 244 65.6
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 1.4e-80 303.5 243 65.8
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 2.5e-80 302.8 243 63.8
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 2.5e-80 302.8 289 57.4
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 5.5e-80 301.6 240 66.7
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 9.4e-80 300.8 245 64.9
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 2.1e-79 299.7 296 55.4
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 2.7e-79 299.3 242 66.9
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 2.7e-79 299.3 246 63.0
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 7.9e-79 297.7 241 64.7
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 1.4e-78 297.0 241 63.9
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 3.0e-78 295.8 243 62.1
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 3.0e-78 295.8 243 61.7
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 3.9e-78 295.4 241 64.7
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 5.2e-78 295.0 243 61.7
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 1.1e-77 293.9 254 63.0
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 1.5e-77 293.5 243 63.4
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 2.6e-77 292.7 244 63.5
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 2.6e-77 292.7 245 63.3
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 3.3e-77 292.4 201 71.1
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 5.7e-77 291.6 243 61.3
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 9.7e-77 290.8 243 62.6
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 1.3e-76 290.4 243 60.9
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 1.3e-76 290.4 243 61.3
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 1.3e-76 290.4 243 61.7
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 2.2e-76 289.7 241 63.9
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 4.8e-76 288.5 242 64.9
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 1.1e-75 287.3 280 58.2
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 4.1e-75 285.4 230 66.5
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 1.2e-74 283.9 245 61.6
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 1.6e-74 283.5 211 65.9
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 1.6e-74 283.5 238 65.5
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 1.0e-73 280.8 157 85.4
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 1.0e-73 280.8 157 85.4
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 2.5e-72 276.2 182 72.0
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 5.5e-72 275.0 156 82.7
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 5.5e-72 275.0 258 58.1
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 1.6e-71 273.5 175 73.7
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 2.1e-71 273.1 175 73.7
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 2.1e-71 273.1 167 77.2
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 2.7e-71 272.7 175 73.1
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 1.4e-70 270.4 157 82.2
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 8.8e-70 267.7 178 73.0
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 8.8e-70 267.7 156 83.3
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.2e-69 267.3 167 76.0
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 1.5e-69 266.9 157 80.3
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 2.0e-69 266.5 176 73.9
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 2.6e-69 266.2 156 81.4
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 4.4e-69 265.4 154 81.8
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 5.7e-69 265.0 155 80.0
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 7.5e-69 264.6 206 68.0
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 9.7e-69 264.2 186 68.3
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 2.2e-68 263.1 190 68.9
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 8.2e-68 261.2 155 79.4
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 8.2e-68 261.2 200 67.0
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 8.2e-68 261.2 160 76.2
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 1.8e-67 260.0 181 70.7
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 2.4e-67 259.6 195 66.7
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 4.1e-67 258.8 200 64.0
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 4.1e-67 258.8 160 75.0
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 5.3e-67 258.5 197 65.0
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 7.0e-67 258.1 183 69.9
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 1.2e-66 257.3 157 76.4
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 1.2e-66 257.3 209 64.1
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 1.6e-66 256.9 201 64.2
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 2.0e-66 256.5 197 64.5
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 2.7e-66 256.1 153 79.7
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 4.5e-66 255.4 178 69.7
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 1.0e-65 254.2 154 77.3
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 1.7e-65 253.4 160 73.1
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 8.5e-65 251.1 155 78.1
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 7.2e-64 248.1 178 66.9
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 2.7e-63 246.1 159 74.8
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 4.7e-63 245.4 296 49.3
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 1.0e-62 244.2 154 76.6
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 1.0e-62 244.2 147 78.2
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 4.0e-62 242.3 191 66.5
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 2.6e-61 239.6 195 63.6
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 4.8e-60 235.3 154 71.4
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 1.4e-59 233.8 154 70.8
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 2.0e-58 229.9 148 73.6
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 3.5e-58 229.2 144 75.0
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 3.8e-57 225.7 206 60.7
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 1.2e-55 220.7 154 70.8
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 1.4e-54 217.2 154 67.5
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 1.2e-53 214.2 153 65.4
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 4.9e-52 208.8 120 85.0
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 7.8e-50 201.4 123 78.9
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 2.3e-49 199.9 163 56.4
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 8.6e-49 198.0 195 48.7
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 3.6e-47 192.6 231 48.5
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 1.3e-44 184.1 141 67.4
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 1.8e-38 163.7 154 52.6
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 9.8e-37 157.9 84 84.5
Nn3g19990 Nelumbo nucifera HOM05D006308 ORTHO05D007820 4.1e-35 152.5 135 60.7
Nn3g19991 Nelumbo nucifera HOM05D006308 ORTHO05D007820 4.1e-35 152.5 135 60.7
A01p40580 Brassica napus HOM05D006308 ORTHO05D007820 4.3e-32 142.5 128 57.8
Nn3g18400 Nelumbo nucifera HOM05D006308 ORTHO05D007820 6.4e-28 128.6 85 76.5
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 7.1e-27 125.2 104 51.0
Cre03.g205600 Chlamydomonas reinhardtii HOM05D006308 ORTHO05D007820 1.2e-23 114.4 119 46.2
MCO04G467 Micromonas commoda HOM05D006308 ORTHO05D007820 2.8e-23 113.2 116 44.0
Cpa.g.sc10.49 Carica papaya HOM05D006308 ORTHO05D007820 8.1e-23 111.7 133 48.9
CAN.G337.145 Capsicum annuum HOM05D006308 ORTHO05D007820 5.2e-22 109.0 90 62.2
PRCOL_00002538 Prasinoderma coloniale HOM05D006308 ORTHO05D007820 7.6e-21 105.1 130 42.3
CBR_g48397 Chara braunii HOM05D006308 ORTHO05D007820 1.4e-14 84.3 83 55.4
AUR62039167 Chenopodium quinoa HOM05D007854 ORTHO05D138328 7.1e-11 72.0 38 76.3
Actinidia07353 Actinidia chinensis HOM05D006308 ORTHO05D007820 3.5e-10 69.7 110 40.9
Zm00001eb317050 Zea mays HOM05D006308 ORTHO05D007820 1.7e-09 67.4 76 48.7
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 1.8e-06 57.4 136 27.9
Prupe.1G233300 Prunus persica HOM05D006725 ORTHO05D008223 5.3e-06 55.8 105 32.4
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 6.9e-06 55.5 92 37.0


User provided reference genes

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