Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G005020 Citrullus lanatus HOM05D005173 ORTHO05D006214 2.8e-64 248.4 122 100.0
ClCG03G015280 Citrullus lanatus HOM05D005173 ORTHO05D006214 4.2e-28 128.3 77 85.7
MELO3C015504.2 Cucumis melo HOM05D005173 ORTHO05D006214 6.0e-27 124.4 77 83.1
CsaV3_1G040770 Cucumis sativus L. HOM05D005173 ORTHO05D006214 6.0e-27 124.4 77 83.1
Phvul.003G133200 Phaseolus vulgaris HOM05D005173 ORTHO05D006214 7.8e-27 124.0 77 80.5
VMungo1215G2902 Vigna mungo HOM05D005173 ORTHO05D006214 7.8e-27 124.0 77 80.5
Ciclev10008959m.g Citrus clementina HOM05D005173 ORTHO05D006214 1.3e-26 123.2 77 79.2
Ah.14g085040 Amaranthus hybridus HOM05D005173 ORTHO05D006214 5.1e-26 121.3 77 77.9
Glyma.13G107800 Glycine max HOM05D005173 ORTHO05D006214 5.1e-26 121.3 77 77.9
Sed0012764 Sechium edule HOM05D005173 ORTHO05D006214 5.1e-26 121.3 77 80.5
Glyma.17G051500 Glycine max HOM05D005173 ORTHO05D006214 8.7e-26 120.6 77 79.2
Manes.03G037700 Manihot esculenta HOM05D005173 ORTHO05D006214 8.7e-26 120.6 77 76.6
EL10Ac8g19142 Beta vulgaris HOM05D005173 ORTHO05D006214 1.1e-25 120.2 77 77.9
Lj4g0027115 Lotus japonicus HOM05D005173 ORTHO05D006214 1.5e-25 119.8 77 79.2
Lalb_Chr07g0181031 Lupinus albus HOM05D005173 ORTHO05D006214 1.9e-25 119.4 77 77.9
Atru.chr7.1658 Acer truncatum HOM05D005173 ORTHO05D006214 2.5e-25 119.0 77 76.6
AUR62029004 Chenopodium quinoa HOM05D005173 ORTHO05D006214 2.5e-25 119.0 77 76.6
FAN26G1854 Fragaria x ananassa HOM05D005173 ORTHO05D006214 2.5e-25 119.0 77 79.2
FAN26G2726 Fragaria x ananassa HOM05D005173 ORTHO05D006214 2.5e-25 119.0 77 79.2
FAN28G2824 Fragaria x ananassa HOM05D005173 ORTHO05D006214 2.5e-25 119.0 77 79.2
Psat4g016960 Pisum sativum HOM05D005173 ORTHO05D006214 2.5e-25 119.0 77 76.6
Actinidia39689 Actinidia chinensis HOM05D005173 ORTHO05D006214 3.3e-25 118.6 77 76.6
CSS0048515 Camellia sinensis var. sinensis HOM05D005173 ORTHO05D006214 3.3e-25 118.6 77 76.6
Dinv42364 Davidia involucrata HOM05D005173 ORTHO05D006214 3.3e-25 118.6 77 76.6
AUR62025172 Chenopodium quinoa HOM05D005173 ORTHO05D006214 4.3e-25 118.2 77 76.6
Medtr4g125660 Medicago truncatula HOM05D005173 ORTHO05D006214 4.3e-25 118.2 77 76.6
Cpa.g.sc28.94 Carica papaya HOM05D005173 ORTHO05D006214 5.6e-25 117.9 77 74.0
COL.COLO4_18139 Corchorus olitorius HOM05D005173 ORTHO05D006214 5.6e-25 117.9 77 76.6
Manes.16G098000 Manihot esculenta HOM05D005173 ORTHO05D006214 5.6e-25 117.9 77 76.6
CANSAT56G2861 Cannabis sativa HOM05D005173 ORTHO05D006214 7.3e-25 117.5 77 77.9
CDE04G2820 Ceratophyllum demersum HOM05D005173 ORTHO05D006214 7.3e-25 117.5 77 74.0
Gorai.013G226300 Gossypium raimondii HOM05D005173 ORTHO05D006214 7.3e-25 117.5 77 75.3
TPR.G9429 Trifolium pratense HOM05D005173 ORTHO05D006214 7.3e-25 117.5 77 74.0
Haze_25966 Corylus avellana HOM05D005173 ORTHO05D006214 9.6e-25 117.1 77 72.7
FvH4_1g08150 Fragaria vesca HOM05D005173 ORTHO05D006214 9.6e-25 117.1 77 76.6
FAN19G2713 Fragaria x ananassa HOM05D005173 ORTHO05D006214 9.6e-25 117.1 77 76.6
Rhsim05G0012900 Rhododendron simsii HOM05D005173 ORTHO05D006214 9.6e-25 117.1 77 76.6
CiPaw.03G210500 Carya illinoinensis HOM05D005173 ORTHO05D006214 1.3e-24 116.7 77 76.6
Dinv25585 Davidia involucrata HOM05D005173 ORTHO05D006214 1.3e-24 116.7 77 75.3
FAN23G0270 Fragaria x ananassa HOM05D005173 ORTHO05D006214 1.3e-24 116.7 77 77.9
Nn8g38732 Nelumbo nucifera HOM05D005173 ORTHO05D006214 1.3e-24 116.7 77 76.6
CAN.G88.5 Capsicum annuum HOM05D005173 ORTHO05D006214 1.6e-24 116.3 77 74.0
Hma1.2p1_0797F.1_g219350 Hydrangea macrophylla HOM05D005173 ORTHO05D006214 1.6e-24 116.3 77 74.0
vmacro17173 Vaccinium macrocarpon HOM05D005173 ORTHO05D006214 1.6e-24 116.3 77 74.0
Nitab4.5_0001488g0160 Nicotiana tabacum HOM05D005173 ORTHO05D006214 2.1e-24 115.9 77 74.0
Oeu054818.3 Olea europaea HOM05D005173 ORTHO05D006214 2.1e-24 115.9 77 74.0
Sed0013811 Sechium edule HOM05D005173 ORTHO05D006214 2.1e-24 115.9 77 77.9
Ca_21308_v3 Cicer arietinum L. HOM05D005173 ORTHO05D006214 2.8e-24 115.5 77 74.0
RcHm_v2.0_Chr2g0094221 Rosa chinensis HOM05D005173 ORTHO05D006214 2.8e-24 115.5 77 76.6
SGA_v2.0_scaffold21G09462 Striga asiatica HOM05D005173 ORTHO05D006214 2.8e-24 115.5 77 75.3
GSVIVG01015121001 Vitis vinifera HOM05D005173 ORTHO05D006214 2.8e-24 115.5 77 74.0
MD15G1213300 Malus domestica HOM05D005173 ORTHO05D006214 3.6e-24 115.2 76 77.6
BcaB08g36505 Brassica carinata HOM05D005173 ORTHO05D006214 4.8e-24 114.8 77 72.7
Eucgr.C00843 Eucalyptus grandis HOM05D005173 ORTHO05D006214 4.8e-24 114.8 77 74.0
QL02p061251 Quercus lobata HOM05D005173 ORTHO05D006214 4.8e-24 114.8 77 76.6
Sabra18G0057400 Salix brachista HOM05D005173 ORTHO05D006214 4.8e-24 114.8 77 74.0
Sc18g0002360 Simmondsia chinensis HOM05D005173 ORTHO05D006214 4.8e-24 114.8 77 72.7
Sopen07g020470 Solanum pennellii HOM05D005173 ORTHO05D006214 4.8e-24 114.8 77 72.7
PGSC0003DMG400020952 Solanum tuberosum HOM05D005173 ORTHO05D006214 4.8e-24 114.8 77 72.7
Duzib168G0179 Durio zibethinus HOM05D005173 ORTHO05D006214 6.2e-24 114.4 77 74.0
Prupe.7G203600 Prunus persica HOM05D005173 ORTHO05D006214 6.2e-24 114.4 77 75.3
SalBow1G6961 Salvia bowleyana HOM05D005173 ORTHO05D006214 6.2e-24 114.4 77 75.3
arahy.Tifrunner.gnm1.ann1.6AS4TW Arachis hypogaea HOM05D005173 ORTHO05D006214 8.1e-24 114.0 77 72.7
MSTRG.19482 Avicennia marina HOM05D005173 ORTHO05D006214 8.1e-24 114.0 77 72.7
Potri.018G064800 Populus trichocarpa HOM05D005173 ORTHO05D006214 8.1e-24 114.0 77 72.7
Thecc.09G081500 Theobroma cacao HOM05D005173 ORTHO05D006214 8.1e-24 114.0 77 72.7
Solyc07g041200.3 Solanum lycopersicum HOM05D005173 ORTHO05D006214 1.1e-23 113.6 77 71.4
A10p19490 Brassica napus HOM05D005173 ORTHO05D006214 1.4e-23 113.2 77 71.4
BraA10t44025Z Brassica rapa HOM05D005173 ORTHO05D006214 1.4e-23 113.2 77 71.4
Gohir.A13G192200 Gossypium hirsutum HOM05D005173 ORTHO05D006214 1.4e-23 113.2 77 71.4
Gohir.D13G197600 Gossypium hirsutum HOM05D005173 ORTHO05D006214 1.4e-23 113.2 77 72.7
THA.LOC104799624 Tarenaya hassleriana HOM05D005173 ORTHO05D006214 1.4e-23 113.2 77 72.7
Nitab4.5_0013150g0020 Nicotiana tabacum HOM05D005173 ORTHO05D006214 1.8e-23 112.8 77 71.4
Migut.L01541 Erythranthe guttata HOM05D005173 ORTHO05D006214 2.4e-23 112.5 77 72.7
PGR142G0948 Punica granatum HOM05D005173 ORTHO05D006214 2.4e-23 112.5 76 76.3
Aa31LG1G14140 Aethionema arabicum HOM05D005173 ORTHO05D006214 3.1e-23 112.1 76 71.1
Lalb_Chr12g0200011 Lupinus albus HOM05D005173 ORTHO05D006214 3.1e-23 112.1 76 72.4
MD02G1086100 Malus domestica HOM05D005173 ORTHO05D006214 3.1e-23 112.1 76 75.0
PSO421G0551 Papaver somniferum HOM05D005173 ORTHO05D006214 3.1e-23 112.1 77 72.7
arahy.Tifrunner.gnm1.ann1.9Y0BJI Arachis hypogaea HOM05D005173 ORTHO05D006214 4.0e-23 111.7 77 71.4
BcaC04g19437 Brassica carinata HOM05D005173 ORTHO05D006214 5.3e-23 111.3 77 70.1
C09p55690 Brassica napus HOM05D005173 ORTHO05D006214 5.3e-23 111.3 77 70.1
Duzib150G1290 Durio zibethinus HOM05D005173 ORTHO05D006214 5.3e-23 111.3 77 72.7
Potri.006G145200 Populus trichocarpa HOM05D005173 ORTHO05D006214 5.3e-23 111.3 77 70.1
TAR636G1303 Trochodendron aralioides HOM05D005173 ORTHO05D006214 5.3e-23 111.3 77 72.7
PSO063G3756 Papaver somniferum HOM05D005173 ORTHO05D006214 6.9e-23 110.9 77 71.4
Lj7C682G9 Lonicera japonica HOM05D005173 ORTHO05D006214 9.0e-23 110.5 77 70.1
TAR624G0255 Trochodendron aralioides HOM05D005173 ORTHO05D006214 9.0e-23 110.5 77 70.1
CARHR192290 Cardamine hirsuta HOM05D005173 ORTHO05D006214 1.5e-22 109.8 77 68.8
Cc00_g19370 Coffea canephora HOM05D005173 ORTHO05D006214 2.0e-22 109.4 77 68.8
AL6G32050 Arabidopsis lyrata HOM05D005173 ORTHO05D006214 2.6e-22 109.0 77 67.5
Thhalv10014184m.g Eutrema salsugineum HOM05D005173 ORTHO05D006214 2.6e-22 109.0 77 67.5
MSTRG.10526 Avicennia marina HOM05D005173 ORTHO05D006214 3.4e-22 108.6 77 68.8
BcaB05g22843 Brassica carinata HOM05D005173 ORTHO05D006214 3.4e-22 108.6 74 71.6
BolC9t58435H Brassica oleracea HOM05D005173 ORTHO05D006214 3.4e-22 108.6 76 69.7
MSTRG.26457 Avicennia marina HOM05D005173 ORTHO05D006214 5.8e-22 107.8 77 68.8
A02p06290 Brassica napus HOM05D005173 ORTHO05D006214 5.8e-22 107.8 74 70.3
BraA02t05577Z Brassica rapa HOM05D005173 ORTHO05D006214 5.8e-22 107.8 74 70.3
TWI32G0591 Tripterygium wilfordii HOM05D005173 ORTHO05D006214 7.6e-22 107.5 74 70.3
TWI63G0548 Tripterygium wilfordii HOM05D005173 ORTHO05D006214 7.6e-22 107.5 77 68.8
AT5G20520 Arabidopsis thaliana HOM05D005173 ORTHO05D006214 1.3e-21 106.7 77 64.9
Carub.0006s1885 Capsella rubella HOM05D005173 ORTHO05D006214 1.3e-21 106.7 76 69.7
BolC2t07046H Brassica oleracea HOM05D005173 ORTHO05D006214 2.9e-21 105.5 79 64.6
HanXRQChr09g0237971 Helianthus annuus HOM05D005173 ORTHO05D006214 2.9e-21 105.5 77 66.2
Aqoxy7G01101 Aquilegia oxysepala HOM05D005173 ORTHO05D006214 3.8e-21 105.1 77 66.2
Lsat_1_v5_gn_5_142000 Lactuca sativa HOM05D005173 ORTHO05D006214 3.8e-21 105.1 77 64.9
Sp6g23940 Schrenkiella parvula HOM05D005173 ORTHO05D006214 4.9e-21 104.8 74 67.6
ECA234G3859 Erigeron canadensis HOM05D005173 ORTHO05D006214 6.4e-21 104.4 77 64.9
Sabra06G0114800 Salix brachista HOM05D005173 ORTHO05D006214 6.4e-21 104.4 77 66.2
BcaC03g13770 Brassica carinata HOM05D005173 ORTHO05D006214 1.1e-20 103.6 73 68.5
Lsat_1_v5_gn_7_34821 Lactuca sativa HOM05D005173 ORTHO05D006214 1.4e-20 103.2 77 66.2
HanXRQChr01g0007561 Helianthus annuus HOM05D005173 ORTHO05D006214 1.9e-20 102.8 77 66.2
HPP92_009230 Vanilla planifolia HOM05D005173 ORTHO05D006214 7.1e-20 100.9 93 54.8
DCAR_024724 Daucus carota HOM05D005173 ORTHO05D006214 1.6e-19 99.8 77 61.0
DCAR_031940 Daucus carota HOM05D005173 ORTHO05D006214 1.6e-19 99.8 77 61.0
ATR0598G148 Amborella trichopoda HOM05D005173 ORTHO05D006214 6.0e-19 97.8 77 62.3
SHI33752 Sapria himalayana HOM05D005173 ORTHO05D006214 1.7e-18 96.3 76 64.5
CBR_g3819 Chara braunii HOM05D005173 ORTHO05D006214 3.9e-18 95.1 82 62.2
Peaxi162Scf00246g00045 Petunia axillaris HOM05D005173 ORTHO05D006214 4.3e-17 91.7 60 73.3
Os07g0608300 Oryza sativa ssp. japonica HOM05D005173 ORTHO05D006214 7.3e-17 90.9 76 57.9
unitig_22.g5750 Utricularia gibba HOM05D005173 ORTHO05D006214 7.3e-17 90.9 77 59.7
Mapoly0002s0260 Marchantia polymorpha HOM05D005173 ORTHO05D006214 1.3e-16 90.1 76 56.6
SMO203G0271 Selaginella moellendorffii HOM05D005173 ORTHO05D006214 2.1e-16 89.4 71 60.6
Zm00001eb108940 Zea mays HOM05D005173 ORTHO05D006214 3.6e-16 88.6 78 56.4
DCAR_028284 Daucus carota HOM05D005173 ORTHO05D006214 4.8e-16 88.2 74 58.1
HPP92_006149 Vanilla planifolia HOM05D005173 ORTHO05D006214 4.8e-16 88.2 76 56.6
Pp3c15_14310 Physcomitrium patens HOM05D005173 ORTHO05D006214 3.8e-13 78.6 68 54.4
Actinidia25222 Actinidia chinensis HOM05D005173 ORTHO05D006214 4.9e-13 78.2 56 66.1
CSS0040146 Camellia sinensis var. sinensis HOM05D005173 ORTHO05D006214 2.3e-10 69.3 43 72.1


User provided reference genes

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