Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G000420 Citrullus lanatus HOM05D007082 ORTHO05D008895 8.8e-93 343.6 170 100.0
MELO3C014298.2 Cucumis melo HOM05D007082 ORTHO05D008895 6.5e-80 300.8 172 87.8
CsaV3_2G013600 Cucumis sativus L. HOM05D007082 ORTHO05D008895 4.7e-78 294.7 172 86.0
Sed0015110 Sechium edule HOM05D007082 ORTHO05D008895 4.7e-62 241.5 171 73.1
MD03G1260600 Malus domestica HOM05D007082 ORTHO05D008895 3.3e-55 218.8 159 65.4
CiPaw.07G089100 Carya illinoinensis HOM05D007082 ORTHO05D008895 5.6e-55 218.0 164 63.4
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 1.4e-53 213.4 160 65.0
Haze_04674 Corylus avellana HOM05D007082 ORTHO05D008895 1.5e-52 209.9 164 61.0
QL12p020738 Quercus lobata HOM05D007082 ORTHO05D008895 2.0e-52 209.5 159 61.0
RcHm_v2.0_Chr6g0290411 Rosa chinensis HOM05D007082 ORTHO05D008895 3.4e-52 208.8 159 62.9
CANSAT25G2376 Cannabis sativa HOM05D007082 ORTHO05D008895 2.2e-51 206.1 158 63.3
Cfa004492 Carpinus fangiana HOM05D007082 ORTHO05D008895 2.2e-51 206.1 164 61.6
TWI12G0539 Tripterygium wilfordii HOM05D007082 ORTHO05D008895 3.7e-51 205.3 159 62.9
CSS0021912 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 1.1e-50 203.8 159 62.3
CSS0029740 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 1.1e-50 203.8 159 62.3
Potri.005G212900 Populus trichocarpa HOM05D007082 ORTHO05D008895 1.8e-50 203.0 164 57.3
Haze_10047 Corylus avellana HOM05D007082 ORTHO05D008895 2.4e-50 202.6 164 59.8
MSTRG.18253 Avicennia marina HOM05D007082 ORTHO05D008895 9.2e-50 200.7 156 59.6
Haze_10052 Corylus avellana HOM05D007082 ORTHO05D008895 9.2e-50 200.7 164 59.1
Hund09516 Selenicereus undatus HOM05D007082 ORTHO05D008895 7.8e-49 197.6 160 60.0
FvH4_2g23151 Fragaria vesca HOM05D007082 ORTHO05D008895 2.3e-48 196.1 159 58.5
FAN20G2212 Fragaria x ananassa HOM05D007082 ORTHO05D008895 8.6e-48 194.1 159 57.9
Atru.chr5.1487 Acer truncatum HOM05D000296 ORTHO05D000175 1.1e-47 193.7 162 59.9
Dinv32900 Davidia involucrata HOM05D007082 ORTHO05D008895 1.1e-47 193.7 151 61.6
Nn5g27058 Nelumbo nucifera HOM05D007082 ORTHO05D008895 1.5e-47 193.4 159 59.1
Manes.01G205300 Manihot esculenta HOM05D007082 ORTHO05D008895 4.3e-47 191.8 155 60.0
TAR622G1184 Trochodendron aralioides HOM05D007082 ORTHO05D008895 5.6e-47 191.4 158 58.9
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 9.5e-47 190.7 156 56.4
arahy.Tifrunner.gnm1.ann1.CZ80LA Arachis hypogaea HOM05D007082 ORTHO05D008895 2.8e-46 189.1 159 56.6
Ah.11g050380 Amaranthus hybridus HOM05D007082 ORTHO05D008895 8.0e-46 187.6 164 54.3
Sopen01g035010 Solanum pennellii HOM05D007082 ORTHO05D008895 1.0e-45 187.2 157 57.3
vmacro14749 Vaccinium macrocarpon HOM05D007082 ORTHO05D008895 1.0e-45 187.2 154 60.4
Oeu025749.1 Olea europaea HOM05D007082 ORTHO05D008895 2.3e-45 186.0 156 55.1
SalBow4G2456 Salvia bowleyana HOM05D007082 ORTHO05D008895 3.1e-45 185.7 157 54.8
Ciclev10022619m.g Citrus clementina HOM05D007082 ORTHO05D008895 4.0e-45 185.3 157 56.7
Migut.D00329 Erythranthe guttata HOM05D007082 ORTHO05D008895 4.0e-45 185.3 160 55.6
arahy.Tifrunner.gnm1.ann1.4F6QX0 Arachis hypogaea HOM05D007082 ORTHO05D008895 8.9e-45 184.1 160 56.2
Thecc.05G027700 Theobroma cacao HOM05D007082 ORTHO05D008895 8.9e-45 184.1 155 58.7
Cc01_g19180 Coffea canephora HOM05D007082 ORTHO05D008895 2.0e-44 183.0 156 53.8
Nitab4.5_0016351g0010 Nicotiana tabacum HOM05D007082 ORTHO05D008895 2.6e-44 182.6 160 53.8
CAN.G410.16 Capsicum annuum HOM05D007082 ORTHO05D008895 4.4e-44 181.8 161 53.4
Lj2P1167T48 Lonicera japonica HOM05D007082 ORTHO05D008895 1.3e-43 180.3 159 51.6
SGA_v2.0_scaffold12G06137 Striga asiatica HOM05D003153 ORTHO05D008895 2.2e-43 179.5 155 55.5
Rhsim13G0027400 Rhododendron simsii HOM05D007082 ORTHO05D008895 2.9e-43 179.1 158 55.1
COL.COLO4_14680 Corchorus olitorius HOM05D007082 ORTHO05D008895 3.7e-43 178.7 155 56.1
Lalb_Chr10g0095561 Lupinus albus HOM05D007082 ORTHO05D008895 6.4e-43 177.9 159 54.1
Eucgr.H01442 Eucalyptus grandis HOM05D007082 ORTHO05D008895 8.3e-43 177.6 155 56.8
SGA_v2.0_scaffold1G00512 Striga asiatica HOM05D007082 ORTHO05D008895 8.3e-43 177.6 155 55.5
DCAR_002714 Daucus carota HOM05D007082 ORTHO05D008895 1.1e-42 177.2 161 54.7
Eucgr.H01435 Eucalyptus grandis HOM05D007082 ORTHO05D008895 1.1e-42 177.2 156 55.8
Eucgr.H01429 Eucalyptus grandis HOM05D007082 ORTHO05D008895 1.4e-42 176.8 155 56.8
Lj2g0002316 Lotus japonicus HOM05D007082 ORTHO05D008895 1.4e-42 176.8 170 49.4
PGR119G0159 Punica granatum HOM05D007082 ORTHO05D008895 1.6e-41 173.3 166 54.8
Lsat_1_v5_gn_9_86820 Lactuca sativa HOM05D007082 ORTHO05D008895 2.7e-41 172.6 158 54.4
HanXRQChr05g0154391 Helianthus annuus HOM05D007082 ORTHO05D008895 6.0e-41 171.4 155 54.2
Duzib128G1180 Durio zibethinus HOM05D007082 ORTHO05D008895 7.8e-41 171.0 155 52.9
Eucgr.H01418 Eucalyptus grandis HOM05D007082 ORTHO05D008895 1.0e-40 170.6 151 56.3
EL10Ac5g10526 Beta vulgaris HOM05D007082 ORTHO05D008895 1.7e-40 169.9 155 54.8
Lsat_1_v5_gn_9_6120 Lactuca sativa HOM05D007082 ORTHO05D008895 3.0e-40 169.1 159 52.8
Gorai.001G088200 Gossypium raimondii HOM05D007082 ORTHO05D008895 5.0e-40 168.3 159 52.8
Gohir.D07G082600 Gossypium hirsutum HOM05D007082 ORTHO05D008895 1.5e-39 166.8 159 52.8
PSO832G2607 Papaver somniferum HOM05D007082 ORTHO05D008895 3.3e-39 165.6 157 50.3
TPR.G34570 Trifolium pratense HOM05D007082 ORTHO05D008895 3.3e-39 165.6 164 47.6
PSO210G1980 Papaver somniferum HOM05D007082 ORTHO05D008895 4.3e-39 165.2 157 51.0
Glyma.08G176000 Glycine max HOM05D007082 ORTHO05D008895 5.6e-39 164.9 163 49.7
Psat6g025560 Pisum sativum HOM05D007082 ORTHO05D008895 7.3e-39 164.5 164 48.8
Cpa.g.sc41.65 Carica papaya HOM05D007082 ORTHO05D008895 1.2e-38 163.7 151 53.6
Medtr1g033230 Medicago truncatula HOM05D007082 ORTHO05D008895 1.1e-37 160.6 159 47.2
CDE05G2411 Ceratophyllum demersum HOM05D007082 ORTHO05D008895 1.4e-37 160.2 154 53.2
Medtr5g020430 Medicago truncatula HOM05D007082 ORTHO05D008895 1.4e-37 160.2 159 47.8
SHI10976 Sapria himalayana HOM05D007082 ORTHO05D008895 3.1e-37 159.1 148 52.0
VMungo1215G3041 Vigna mungo HOM05D007082 ORTHO05D008895 3.1e-37 159.1 163 49.7
Sc05g0001390 Simmondsia chinensis HOM05D007082 ORTHO05D008895 6.8e-37 157.9 148 50.7
AL1G17250 Arabidopsis lyrata HOM05D007082 ORTHO05D008895 1.2e-36 157.1 155 51.6
Carub.0001s0641 Capsella rubella HOM05D007082 ORTHO05D008895 1.2e-36 157.1 154 53.2
Psat6g050280 Pisum sativum HOM05D007082 ORTHO05D008895 1.5e-36 156.8 164 47.0
THA.LOC104800748 Tarenaya hassleriana HOM05D007082 ORTHO05D008895 2.6e-36 156.0 157 54.1
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 4.4e-36 155.2 173 49.7
ECA247G0055 Erigeron canadensis HOM05D007082 ORTHO05D008895 1.3e-35 153.7 119 57.1
CARHR006820 Cardamine hirsuta HOM05D007082 ORTHO05D008895 2.2e-35 152.9 156 51.9
AT1G07130 Arabidopsis thaliana HOM05D007082 ORTHO05D008895 4.9e-35 151.8 155 50.3
SEGI_21621 Sequoiadendron giganteum HOM05D007082 ORTHO05D008895 4.9e-35 151.8 153 49.7
MBI19_g34822_MAGBIO Magnolia biondii HOM05D007082 ORTHO05D008895 6.4e-35 151.4 153 49.7
MD15G1065600 Malus domestica HOM05D007082 ORTHO05D008895 1.1e-34 150.6 124 58.9
Sp1g05880 Schrenkiella parvula HOM05D007082 ORTHO05D008895 3.2e-34 149.1 156 52.6
Aa31LG5G6620 Aethionema arabicum HOM05D007082 ORTHO05D008895 7.1e-34 147.9 157 49.7
Zm00001eb394240 Zea mays HOM05D007082 ORTHO05D008895 2.1e-33 146.4 163 49.7
Gohir.A07G077800 Gossypium hirsutum HOM05D007082 ORTHO05D008895 7.8e-33 144.4 159 49.1
HanXRQChr16g0516211 Helianthus annuus HOM05D007082 ORTHO05D008895 1.3e-32 143.7 143 49.7
Thhalv10008979m.g Eutrema salsugineum HOM05D007082 ORTHO05D008895 1.7e-32 143.3 156 48.1
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 8.6e-32 141.0 152 46.7
BolC8t47089H Brassica oleracea HOM05D007082 ORTHO05D008895 1.1e-31 140.6 156 48.7
C08p02920 Brassica napus HOM05D007082 ORTHO05D008895 1.5e-31 140.2 153 49.0
Os03g0366900 Oryza sativa ssp. japonica HOM05D007082 ORTHO05D008895 1.9e-31 139.8 160 46.9
A08p35770 Brassica napus HOM05D007082 ORTHO05D008895 3.3e-31 139.0 156 48.1
BraA08t35483Z Brassica rapa HOM05D007082 ORTHO05D008895 3.3e-31 139.0 156 48.1
AUR62032313 Chenopodium quinoa HOM05D007082 ORTHO05D008895 9.5e-31 137.5 160 47.5
Phvul.003G015400 Phaseolus vulgaris HOM05D007082 ORTHO05D008895 9.5e-31 137.5 150 48.0
BcaB03g13405 Brassica carinata HOM05D007082 ORTHO05D008895 1.6e-30 136.7 155 44.5
AUR62011993 Chenopodium quinoa HOM05D007082 ORTHO05D008895 1.6e-30 136.7 160 47.5
Eucgr.L00806 Eucalyptus grandis HOM05D007082 ORTHO05D008895 1.6e-30 136.7 155 49.0
BolC8t47080H Brassica oleracea HOM05D007082 ORTHO05D008895 2.1e-30 136.3 156 46.8
C08p02850 Brassica napus HOM05D007082 ORTHO05D008895 6.8e-29 131.3 166 41.0
Mapoly0041s0121 Marchantia polymorpha HOM05D007082 ORTHO05D008895 6.8e-29 131.3 156 42.9
Lj3g0026065 Lotus japonicus HOM05D007082 ORTHO05D008895 1.7e-27 126.7 125 47.2
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 2.4e-26 122.9 155 43.9
ATR0580G091 Amborella trichopoda HOM05D007082 ORTHO05D008895 3.2e-26 122.5 159 43.4
Pp3c1_6180 Physcomitrium patens HOM05D007082 ORTHO05D008895 5.4e-26 121.7 159 38.4
Aqoxy5G02465 Aquilegia oxysepala HOM05D007082 ORTHO05D008895 5.2e-21 105.1 159 39.6
AagrBONN_evm.TU.Sc2ySwM_117.1416 Anthoceros agrestis HOM05D007082 ORTHO05D008895 9.9e-20 100.9 151 35.1
Medtr5g020340 Medicago truncatula HOM05D000096 ORTHO05D008895 3.3e-15 85.9 129 36.4
Actinidia09115 Actinidia chinensis HOM05D007082 ORTHO05D008895 4.8e-14 82.0 66 59.1
MCO14G264 Micromonas commoda HOM05D007082 ORTHO05D008895 4.2e-10 68.9 115 33.9
SMO307G0023 Selaginella moellendorffii HOM05D007082 ORTHO05D008895 2.7e-09 66.2 99 36.4
Sc05g0001360 Simmondsia chinensis HOM05D007082 ORTHO05D008895 4.3e-07 58.9 141 32.6


User provided reference genes

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