Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G009590 Citrullus lanatus HOM05D001473 ORTHO05D003934 3.3e-262 907.9 484 100.0
MELO3C017522.2 Cucumis melo HOM05D001473 ORTHO05D003934 5.5e-156 555.1 406 78.3
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 1.1e-153 547.4 428 74.3
CsaV3_UNG002030 Cucumis sativus L. HOM05D001473 ORTHO05D003934 6.5e-149 531.6 403 75.2
Sed0003092 Sechium edule HOM05D001473 ORTHO05D003934 5.3e-143 511.9 407 73.5
Haze_25281 Corylus avellana HOM05D001473 ORTHO05D003934 3.7e-80 303.1 408 47.8
Cfa002922 Carpinus fangiana HOM05D001473 ORTHO05D003934 1.9e-79 300.8 408 48.3
Glyma.20G223300 Glycine max HOM05D001473 ORTHO05D003934 2.5e-76 290.4 346 51.4
CsaV3_1G045320 Cucumis sativus L. HOM05D001473 ORTHO05D019080 8.9e-74 282.0 285 63.2
Manes.08G139000 Manihot esculenta HOM05D001473 ORTHO05D003934 8.9e-74 282.0 369 46.6
Dinv18449 Davidia involucrata HOM05D001473 ORTHO05D003934 2.0e-73 280.8 381 46.7
Glyma.10G165900 Glycine max HOM05D001473 ORTHO05D003934 3.4e-73 280.0 317 53.9
Dinv05754 Davidia involucrata HOM05D001473 ORTHO05D003934 7.5e-73 278.9 416 45.4
VMungo0464G0145 Vigna mungo HOM05D001473 ORTHO05D003934 1.3e-72 278.1 340 50.3
QL03p030821 Quercus lobata HOM05D001473 ORTHO05D003934 2.2e-72 277.3 403 47.1
Prupe.6G349400 Prunus persica HOM05D001473 ORTHO05D003934 1.9e-71 274.2 408 46.8
Psat3g006920 Pisum sativum HOM05D001473 ORTHO05D003934 3.2e-71 273.5 194 71.1
Ca_09455_v3 Cicer arietinum L. HOM05D001473 ORTHO05D003934 4.1e-71 273.1 194 71.1
Phvul.L001860 Phaseolus vulgaris HOM05D001473 ORTHO05D003934 9.2e-71 271.9 189 73.5
PGR031G3359 Punica granatum HOM05D001473 ORTHO05D003934 9.2e-71 271.9 194 71.1
CiPaw.04G081100 Carya illinoinensis HOM05D001473 ORTHO05D003934 1.6e-70 271.2 402 46.0
Lalb_Chr15g0076051 Lupinus albus HOM05D001473 ORTHO05D003934 2.1e-70 270.8 322 52.5
MD12G1246400 Malus domestica HOM05D001473 ORTHO05D003934 2.1e-70 270.8 361 49.3
GSVIVG01023526001 Vitis vinifera HOM05D001473 ORTHO05D003934 3.5e-70 270.0 194 70.1
Peaxi162Scf00135g00313 Petunia axillaris HOM05D001473 ORTHO05D003934 1.3e-69 268.1 194 70.6
Cpa.g.sc306.2 Carica papaya HOM05D001473 ORTHO05D003934 2.3e-69 267.3 367 46.3
Atru.chr2.968 Acer truncatum HOM05D001473 ORTHO05D003934 3.0e-69 266.9 296 54.1
Phvul.004G090900 Phaseolus vulgaris HOM05D001473 ORTHO05D003934 3.0e-69 266.9 285 53.7
Sabra19G0028000 Salix brachista HOM05D001473 ORTHO05D003934 3.9e-69 266.5 387 45.7
CANSAT54G0715 Cannabis sativa HOM05D001473 ORTHO05D003934 5.1e-69 266.2 399 46.4
TWI31G0266 Tripterygium wilfordii HOM05D001473 ORTHO05D003934 5.1e-69 266.2 378 46.0
Medtr7g115550 Medicago truncatula HOM05D001473 ORTHO05D003934 1.9e-68 264.2 194 68.6
Lj1g0012496 Lotus japonicus HOM05D001473 ORTHO05D003934 2.5e-68 263.8 321 49.8
TPR.G6939 Trifolium pratense HOM05D001473 ORTHO05D003934 2.5e-68 263.8 194 68.0
PGSC0003DMG400011500 Solanum tuberosum HOM05D001473 ORTHO05D003934 5.6e-68 262.7 240 59.6
CSS0044349 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 7.3e-68 262.3 374 44.1
Thecc.05G271600 Theobroma cacao HOM05D001473 ORTHO05D003934 7.3e-68 262.3 369 46.9
CSS0012083 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 9.5e-68 261.9 374 43.9
Solyc04g009950.3 Solanum lycopersicum HOM05D001473 ORTHO05D003934 1.2e-67 261.5 202 67.3
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 1.6e-67 261.2 397 43.8
Gohir.A13G167900 Gossypium hirsutum HOM05D001473 ORTHO05D003934 2.1e-67 260.8 349 49.0
COL.COLO4_15470 Corchorus olitorius HOM05D001473 ORTHO05D003934 2.8e-67 260.4 290 52.8
Manes.09G148400 Manihot esculenta HOM05D001473 ORTHO05D003934 2.8e-67 260.4 397 45.3
Potri.013G046300 Populus trichocarpa HOM05D001473 ORTHO05D003934 2.8e-67 260.4 267 54.7
Gorai.013G187200 Gossypium raimondii HOM05D001473 ORTHO05D003934 3.6e-67 260.0 346 48.8
Gohir.D13G173300 Gossypium hirsutum HOM05D001473 ORTHO05D003934 6.2e-67 259.2 346 48.8
arahy.Tifrunner.gnm1.ann1.33TMW6 Arachis hypogaea HOM05D001473 ORTHO05D003934 8.1e-67 258.8 337 48.4
CAN.G1609.5 Capsicum annuum HOM05D001473 ORTHO05D003934 8.1e-67 258.8 202 66.3
Sopen04g005080 Solanum pennellii HOM05D001473 ORTHO05D003934 8.1e-67 258.8 201 67.2
Duzib128G0032 Durio zibethinus HOM05D001473 ORTHO05D003934 1.1e-66 258.5 276 54.7
Gohir.A11G247900 Gossypium hirsutum HOM05D001473 ORTHO05D003934 1.1e-66 258.5 293 51.9
Lj5A229T67 Lonicera japonica HOM05D001473 ORTHO05D003934 1.1e-66 258.5 194 66.5
Gohir.D11G258300 Gossypium hirsutum HOM05D001473 ORTHO05D003934 1.8e-66 257.7 327 49.8
Gorai.007G276500 Gossypium raimondii HOM05D001473 ORTHO05D003934 1.8e-66 257.7 327 49.8
TAR362G0879 Trochodendron aralioides HOM05D001473 ORTHO05D003934 3.1e-66 256.9 425 41.6
Actinidia40002 Actinidia chinensis HOM05D001473 ORTHO05D003934 4.0e-66 256.5 394 43.9
CSS0041231 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 4.0e-66 256.5 194 68.6
Lalb_Chr18g0044021 Lupinus albus HOM05D001473 ORTHO05D003934 5.2e-66 256.1 190 67.9
Duzib106G1036 Durio zibethinus HOM05D001473 ORTHO05D003934 6.8e-66 255.8 373 46.4
Duzib177G0283 Durio zibethinus HOM05D001473 ORTHO05D003934 6.8e-66 255.8 342 47.7
TWI79G0745 Tripterygium wilfordii HOM05D001473 ORTHO05D003934 6.8e-66 255.8 395 43.3
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.6e-65 253.8 344 45.1
FvH4_6g01950 Fragaria vesca HOM05D001473 ORTHO05D003934 3.4e-65 253.4 370 45.4
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.4e-65 253.4 343 46.6
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 5.8e-65 252.7 345 46.7
vmacro19999 Vaccinium macrocarpon HOM05D001473 ORTHO05D003934 5.8e-65 252.7 370 46.5
Rhsim05G0175000 Rhododendron simsii HOM05D001473 ORTHO05D003934 7.6e-65 252.3 299 49.8
DCAR_023095 Daucus carota HOM05D001473 ORTHO05D003934 9.9e-65 251.9 188 66.0
Potri.019G018400 Populus trichocarpa HOM05D001473 ORTHO05D003934 1.3e-64 251.5 405 41.0
Ciclev10018691m.g Citrus clementina HOM05D001473 ORTHO05D003934 2.2e-64 250.8 389 45.8
RcHm_v2.0_Chr3g0449801 Rosa chinensis HOM05D001473 ORTHO05D003934 8.4e-64 248.8 349 45.3
arahy.Tifrunner.gnm1.ann1.HJHY8E Arachis hypogaea HOM05D001473 ORTHO05D003934 4.2e-63 246.5 281 51.2
arahy.Tifrunner.gnm1.ann1.R6YD0H Arachis hypogaea HOM05D001473 ORTHO05D003934 4.2e-63 246.5 281 51.2
Eucgr.B01570 Eucalyptus grandis HOM05D001473 ORTHO05D003934 5.4e-63 246.1 282 50.7
HanXRQChr08g0225461 Helianthus annuus HOM05D001473 ORTHO05D003934 5.4e-63 246.1 303 47.2
CSS0020922 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 7.1e-63 245.7 196 66.8
Hund07267 Selenicereus undatus HOM05D001473 ORTHO05D003934 2.1e-62 244.2 369 44.4
Oeu012234.1 Olea europaea HOM05D001473 ORTHO05D003934 2.7e-62 243.8 277 50.2
ECA233G2045 Erigeron canadensis HOM05D001473 ORTHO05D003934 3.5e-62 243.4 321 45.5
Sc08g0009190 Simmondsia chinensis HOM05D001473 ORTHO05D003934 4.6e-62 243.0 357 45.4
Lsat_1_v5_gn_8_2880 Lactuca sativa HOM05D001473 ORTHO05D003934 7.8e-62 242.3 268 48.9
SalBow1G0011 Salvia bowleyana HOM05D001473 ORTHO05D003934 3.0e-61 240.4 212 59.4
Aqoxy2G03659 Aquilegia oxysepala HOM05D001473 ORTHO05D003934 5.1e-61 239.6 188 66.0
Migut.F01544 Erythranthe guttata HOM05D001473 ORTHO05D003934 8.7e-61 238.8 193 63.7
AUR62006826 Chenopodium quinoa HOM05D001473 ORTHO05D003934 1.1e-60 238.4 356 41.9
Lj5g0018401 Lotus japonicus HOM05D001473 ORTHO05D003934 1.9e-60 237.7 339 47.2
CSS0046947 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 4.3e-60 236.5 177 70.1
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 4.3e-60 236.5 406 41.4
CSS0002418 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 5.6e-60 236.1 395 41.8
AUR62023607 Chenopodium quinoa HOM05D001473 ORTHO05D003934 7.3e-60 235.7 188 66.0
EL10Ac4g09571 Beta vulgaris HOM05D001473 ORTHO05D003934 1.2e-59 235.0 336 45.8
AUR62000484 Chenopodium quinoa HOM05D001473 ORTHO05D003934 1.6e-59 234.6 356 41.3
FAN14G3813 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.1e-59 234.2 406 41.1
Cc02_g08900 Coffea canephora HOM05D001473 ORTHO05D003934 1.1e-58 231.9 270 48.9
SHI00615 Sapria himalayana HOM05D001473 ORTHO05D003934 9.0e-58 228.8 194 60.3
THA.LOC104805779 Tarenaya hassleriana HOM05D001473 ORTHO05D003934 1.2e-57 228.4 200 59.5
SGA_v2.0_scaffold1G00525 Striga asiatica HOM05D001473 ORTHO05D003934 2.0e-57 227.6 194 59.3
MD04G1229500 Malus domestica HOM05D001473 ORTHO05D003934 3.4e-57 226.9 365 44.4
CDE04G2649 Ceratophyllum demersum HOM05D001473 ORTHO05D003934 7.6e-57 225.7 303 45.5
PSO063G2917 Papaver somniferum HOM05D001473 ORTHO05D003934 1.9e-55 221.1 386 39.9
PSO017G2945 Papaver somniferum HOM05D001473 ORTHO05D003934 3.2e-55 220.3 371 41.0
CDE07G0773 Ceratophyllum demersum HOM05D001473 ORTHO05D003934 5.4e-55 219.5 375 38.4
THA.LOC104823763 Tarenaya hassleriana HOM05D001473 ORTHO05D003934 1.6e-54 218.0 237 50.6
Thhalv10006800m.g Eutrema salsugineum HOM05D001473 ORTHO05D003934 6.0e-54 216.1 188 59.0
unitig_747.g21794 Utricularia gibba HOM05D001473 ORTHO05D003934 6.0e-54 216.1 255 47.5
Os04g0348300 Oryza sativa ssp. japonica HOM05D001473 ORTHO05D003934 7.8e-54 215.7 194 56.7
CARHR009740 Cardamine hirsuta HOM05D001473 ORTHO05D003934 1.0e-53 215.3 234 52.1
Peaxi162Scf00304g00075 Petunia axillaris HOM05D001473 ORTHO05D003934 1.0e-53 215.3 193 60.1
Zm00001eb142770 Zea mays HOM05D001473 ORTHO05D003934 1.3e-53 214.9 194 55.7
Sp1g08360 Schrenkiella parvula HOM05D001473 ORTHO05D003934 1.5e-52 211.5 201 56.2
AT1G09770 Arabidopsis thaliana HOM05D001473 ORTHO05D003934 1.9e-52 211.1 190 56.3
unitig_0.g2788 Utricularia gibba HOM05D001473 ORTHO05D003934 4.3e-52 209.9 188 56.4
AL1G20320 Arabidopsis lyrata HOM05D001473 ORTHO05D003934 7.3e-52 209.1 190 56.8
C05p07840 Brassica napus HOM05D001473 ORTHO05D003934 2.0e-49 201.1 201 53.7
BolC5t29535H Brassica oleracea HOM05D001473 ORTHO05D003934 2.0e-49 201.1 201 53.7
HPP92_023312 Vanilla planifolia HOM05D001473 ORTHO05D003934 2.0e-49 201.1 402 39.3
Sc03g0006100 Simmondsia chinensis HOM05D001473 ORTHO05D003934 3.4e-49 200.3 191 57.1
HPP92_023254 Vanilla planifolia HOM05D001473 ORTHO05D003934 5.8e-49 199.5 389 39.6
A06p06440 Brassica napus HOM05D001473 ORTHO05D003934 7.6e-49 199.1 201 53.2
BraA06t23855Z Brassica rapa HOM05D001473 ORTHO05D003934 7.6e-49 199.1 201 53.2
Carub.0001s0911 Capsella rubella HOM05D001473 ORTHO05D003934 7.6e-49 199.1 200 53.5
A08p34350 Brassica napus HOM05D001473 ORTHO05D003934 9.9e-49 198.7 201 53.2
Aa31LG1G5220 Aethionema arabicum HOM05D001473 ORTHO05D003934 4.9e-48 196.4 247 46.6
ATR0736G172 Amborella trichopoda HOM05D001473 ORTHO05D003934 4.9e-48 196.4 195 52.8
BraA08t35347Z Brassica rapa HOM05D001473 ORTHO05D003934 4.9e-48 196.4 201 52.7
SEGI_20641 Sequoiadendron giganteum HOM05D001473 ORTHO05D003934 1.9e-47 194.5 192 53.1
C08p13180 Brassica napus HOM05D001473 ORTHO05D003934 2.4e-47 194.1 201 51.7
BolC8t48947H Brassica oleracea HOM05D001473 ORTHO05D003934 2.4e-47 194.1 201 51.7
AagrBONN_evm.TU.Sc2ySwM_368.3249 Anthoceros agrestis HOM05D001473 ORTHO05D003934 4.2e-47 193.4 193 54.4
SEGI_38835 Sequoiadendron giganteum HOM05D001473 ORTHO05D003934 6.0e-46 189.5 190 52.6
CsaV3_1G045330 Cucumis sativus L. HOM05D001473 ORTHO05D003934 1.0e-45 188.7 95 98.9
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 6.4e-40 169.5 589 29.2
Pp3c3_17580 Physcomitrium patens HOM05D001473 ORTHO05D003934 1.9e-39 167.9 178 50.6
DCAR_029377 Daucus carota HOM05D001473 ORTHO05D003934 3.5e-38 163.7 174 51.1
Mapoly0014s0195 Marchantia polymorpha HOM05D001473 ORTHO05D003934 2.5e-36 157.5 171 48.0
arahy.Tifrunner.gnm1.ann1.0270XD Arachis hypogaea HOM05D001473 ORTHO05D003934 2.1e-30 137.9 90 75.6
CBR_g39826 Chara braunii HOM05D001473 ORTHO05D003934 2.7e-30 137.5 194 38.7
RcHm_v2.0_Chr5g0032281 Rosa chinensis HOM05D001473 ORTHO05D003934 5.7e-28 129.8 175 47.4
SMO234G0053 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 7.4e-28 129.4 191 38.2
SMO196G0202 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 1.3e-27 128.6 191 38.2
Nitab4.5_0018899g0010 Nicotiana tabacum HOM05D001473 ORTHO05D003934 1.3e-24 118.6 158 48.1
FvH4_3g19200 Fragaria vesca HOM05D001473 ORTHO05D003934 1.1e-23 115.5 160 46.2
SMO196G0272 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 2.7e-22 110.9 204 34.3
Medtr5g010470 Medicago truncatula HOM05D001473 ORTHO05D003934 2.4e-18 97.8 100 51.0
Sabra19G0030700 Salix brachista HOM05D001473 ORTHO05D019080 3.4e-17 94.0 271 32.5
SMO196G0150 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 1.0e-16 92.4 142 38.0
FAN11G3850 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.4e-15 88.6 163 40.5
Cre03.g197350 Chlamydomonas reinhardtii HOM05D001473 ORTHO05D003934 6.1e-14 83.2 176 30.7
QL10p043041 Quercus lobata HOM05D001473 ORTHO05D019080 1.0e-13 82.4 98 53.1
Sabra19G0030800 Salix brachista HOM05D001473 ORTHO05D019080 1.7e-11 75.1 292 28.8
BcaB06g27306 Brassica carinata HOM05D001473 ORTHO05D003934 1.2e-09 68.9 91 42.9


User provided reference genes

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