Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.5e-217 758.4 377 100.0
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 6.5e-173 610.9 318 94.3
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 4.5e-166 588.2 318 92.1
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 4.4e-161 571.6 319 86.2
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 7.4e-100 368.2 328 53.7
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 1.6e-99 367.1 327 54.7
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 2.1e-99 366.7 318 54.4
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 2.1e-99 366.7 326 55.2
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 4.0e-98 362.5 322 55.9
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 9.0e-98 361.3 338 54.7
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 1.2e-97 360.9 312 57.4
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 3.4e-97 359.4 318 54.7
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 4.5e-97 359.0 319 55.5
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 7.6e-97 358.2 318 56.0
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 7.6e-97 358.2 322 55.3
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 1.1e-95 354.4 318 54.4
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 7.1e-95 351.7 318 54.7
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 1.2e-94 350.9 316 55.4
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 2.1e-94 350.1 327 53.5
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 4.6e-94 349.0 326 51.5
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 6.0e-94 348.6 318 53.8
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 1.3e-93 347.4 318 53.1
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 3.0e-93 346.3 318 53.5
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 5.1e-93 345.5 318 52.8
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 6.7e-93 345.1 320 53.1
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 6.7e-93 345.1 318 52.8
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 4.3e-92 342.4 320 52.2
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 5.7e-92 342.0 318 53.1
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 1.3e-91 340.9 318 54.1
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 2.1e-91 340.1 318 53.5
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 2.1e-91 340.1 318 51.9
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 4.8e-91 339.0 318 51.6
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 1.3e-88 330.9 321 51.7
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 1.3e-88 330.9 319 50.5
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 1.7e-88 330.5 319 51.7
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 3.8e-88 329.3 318 50.0
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 3.8e-88 329.3 318 50.0
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 6.5e-88 328.6 320 49.7
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 1.1e-87 327.8 323 52.0
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 1.0e-85 321.2 319 49.5
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 5.7e-84 315.5 318 49.1
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 1.3e-83 314.3 303 52.1
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 2.2e-83 313.5 326 51.2
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 2.8e-83 313.2 319 48.9
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 6.3e-83 312.0 318 48.1
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 6.3e-83 312.0 319 50.2
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 8.2e-83 311.6 327 51.4
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 1.8e-82 310.5 320 51.6
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 4.1e-82 309.3 327 48.9
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 5.3e-82 308.9 318 47.8
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 7.7e-81 305.1 327 50.2
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 1.3e-80 304.3 328 47.6
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 8.5e-80 301.6 319 48.0
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 1.1e-79 301.2 328 47.0
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 2.5e-79 300.1 337 48.7
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 3.2e-79 299.7 327 49.2
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 4.2e-79 299.3 341 44.9
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 5.5e-79 298.9 338 44.7
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 7.2e-79 298.5 328 46.3
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 1.2e-78 297.7 321 48.9
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 1.2e-78 297.7 321 48.9
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 1.2e-78 297.7 328 46.0
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 1.2e-78 297.7 328 46.0
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 1.6e-78 297.4 328 46.3
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 1.6e-78 297.4 328 46.3
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 1.6e-78 297.4 303 48.5
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 2.1e-78 297.0 328 46.3
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 2.1e-78 297.0 345 44.3
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 7.9e-78 295.0 319 47.6
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 3.0e-77 293.1 347 42.7
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 3.0e-77 293.1 320 46.2
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 5.1e-77 292.4 318 45.6
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 5.1e-77 292.4 320 45.9
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 6.7e-77 292.0 319 48.9
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 6.7e-77 292.0 328 45.1
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 8.8e-77 291.6 328 46.3
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 1.1e-76 291.2 328 44.8
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 1.5e-76 290.8 328 45.7
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 2.0e-76 290.4 327 48.3
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 3.3e-76 289.7 319 43.9
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 8.2e-75 285.0 328 44.8
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 4.1e-74 282.7 339 44.0
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 6.9e-74 282.0 318 45.6
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 3.4e-73 279.6 342 43.6
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 3.8e-72 276.2 322 47.2
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.9e-71 273.9 318 42.1
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 3.2e-71 273.1 318 43.4
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 1.8e-69 267.3 333 42.9
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 3.0e-69 266.5 334 41.6
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 6.7e-69 265.4 316 43.0
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 2.4e-66 256.9 317 41.0
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 2.4e-66 256.9 306 44.1
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.2e-64 250.4 318 40.3
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 3.8e-64 249.6 338 41.7
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 6.5e-64 248.8 269 46.1
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.1e-63 248.1 329 41.3
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 3.2e-63 246.5 348 41.7
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 3.2e-63 246.5 348 41.7
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 4.2e-63 246.1 319 42.3
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 1.6e-62 244.2 325 41.2
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 4.7e-62 242.7 360 36.7
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 5.2e-61 239.2 330 38.5
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.2e-59 233.8 329 38.3
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 3.7e-59 233.0 320 39.4
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 9.1e-58 228.4 230 50.9
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 1.7e-48 197.6 266 40.6
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.8e-46 190.3 371 31.0
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 3.7e-43 179.9 193 48.2
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 2.3e-40 170.6 203 44.3
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 3.8e-40 169.9 190 48.4
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 2.1e-38 164.1 182 47.8
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 2.3e-37 160.6 335 33.7
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 6.4e-35 152.5 320 31.6
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 2.3e-32 144.1 188 42.0
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 2.3e-32 144.1 227 37.4
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 1.2e-30 138.3 321 28.3
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 4.7e-30 136.3 126 48.4
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-19 101.7 320 25.3
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 1.4e-18 98.2 95 54.7
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 7.1e-18 95.9 95 53.7
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 3.5e-17 93.6 141 39.7
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 2.1e-14 84.3 291 24.1
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 2.6e-12 77.4 62 54.8


User provided reference genes

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