Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 0.0e+00 1093.2 546 100.0
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 6.7e-187 657.9 542 66.1
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 3.3e-186 655.6 542 66.1
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 8.0e-172 607.8 543 62.1
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 3.4e-106 389.8 542 41.5
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 9.7e-101 371.7 543 39.6
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 2.2e-100 370.5 547 40.2
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 2.2e-100 370.5 543 39.2
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 1.5e-98 364.4 544 39.0
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 1.3e-97 361.3 550 40.2
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 2.9e-97 360.1 544 40.1
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 6.5e-97 359.0 543 38.9
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 2.7e-95 353.6 543 38.9
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 4.6e-95 352.8 542 40.4
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 7.9e-95 352.1 544 39.2
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 6.7e-94 349.0 545 38.7
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 1.9e-93 347.4 542 38.6
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 1.9e-93 347.4 542 38.0
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 4.8e-92 342.8 545 38.2
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 4.8e-92 342.8 545 38.2
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 4.1e-91 339.7 548 37.4
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 6.9e-91 339.0 542 38.4
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 4.5e-90 336.3 545 37.6
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 7.7e-90 335.5 560 35.9
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 1.0e-89 335.1 553 37.4
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 1.3e-89 334.7 493 39.4
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 1.1e-88 331.6 583 38.8
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 2.5e-88 330.5 546 37.4
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 4.2e-88 329.7 548 37.8
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 9.7e-85 318.5 545 35.6
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 1.7e-84 317.8 544 37.1
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 1.8e-83 314.3 534 36.7
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 1.2e-82 311.6 551 36.7
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 2.0e-82 310.8 551 35.8
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 4.5e-82 309.7 539 35.8
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 4.5e-82 309.7 544 34.7
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 1.0e-81 308.5 542 34.7
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 1.4e-80 304.7 537 34.1
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 7.2e-80 302.4 537 34.5
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 4.7e-79 299.7 549 35.3
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 4.7e-79 299.7 535 37.6
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 6.1e-79 299.3 536 35.3
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 2.3e-78 297.4 544 34.7
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 2.3e-78 297.4 552 35.5
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 1.5e-77 294.7 543 35.7
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 7.4e-77 292.4 539 32.7
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 9.7e-77 292.0 537 34.1
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 8.2e-76 288.9 535 33.8
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 1.4e-75 288.1 552 33.2
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 7.0e-75 285.8 539 32.7
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 3.5e-74 283.5 541 32.5
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 5.0e-73 279.6 543 32.6
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 1.5e-72 278.1 542 32.5
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 9.4e-72 275.4 546 34.1
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 8.0e-71 272.3 539 33.6
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 8.0e-71 272.3 536 32.3
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 8.0e-71 272.3 468 36.1
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 2.3e-70 270.8 539 33.4
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 2.6e-69 267.3 544 33.3
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 3.3e-69 266.9 543 33.3
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 7.5e-69 265.8 559 31.8
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 5.3e-67 259.6 471 34.8
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 7.0e-67 259.2 529 34.4
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 9.1e-67 258.8 544 33.3
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 9.1e-67 258.8 648 31.0
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.0e-66 257.7 569 30.9
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 2.7e-66 257.3 558 31.7
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 1.7e-65 254.6 545 32.7
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 1.7e-65 254.6 545 33.2
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 2.5e-64 250.8 545 33.6
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 5.5e-64 249.6 546 33.0
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 5.7e-61 239.6 530 32.5
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.3e-60 238.4 534 31.6
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 2.8e-60 237.3 466 33.5
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 4.8e-60 236.5 539 32.7
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 1.1e-59 235.3 540 29.4
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 1.4e-59 235.0 545 31.6
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 1.8e-59 234.6 545 31.7
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 2.0e-58 231.1 541 32.5
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 1.7e-57 228.0 536 30.6
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 3.8e-57 226.9 469 32.8
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 8.6e-57 225.7 545 32.7
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 1.9e-56 224.6 416 34.9
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 1.2e-55 221.9 537 31.3
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 1.6e-55 221.5 537 31.7
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 1.4e-54 218.4 538 31.6
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 4.0e-54 216.9 380 35.5
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 2.8e-52 210.7 228 46.1
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 1.6e-50 204.9 261 46.0
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 2.7e-50 204.1 438 30.1
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 3.5e-50 203.8 217 47.0
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 2.9e-49 200.7 396 34.3
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 1.2e-47 195.3 234 44.0
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 2.8e-47 194.1 408 33.3
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 1.8e-46 191.4 402 32.1
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 7.5e-45 186.0 538 27.1
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 3.0e-41 174.1 548 29.4
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 1.9e-40 171.4 548 29.2
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 1.2e-37 162.2 550 28.0
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.3e-33 148.7 156 48.1
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 3.9e-33 147.1 195 42.1
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.9e-33 147.1 409 26.9
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 1.5e-32 145.2 249 35.3
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 2.8e-31 141.0 165 45.5
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 7.1e-27 126.3 130 50.0
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 7.1e-19 99.8 427 23.7
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 1.1e-16 92.4 457 23.0
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 1.8e-14 85.1 468 23.7
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 4.9e-12 77.0 98 41.8
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 1.1e-11 75.9 168 33.3
BcaB06g28204 Brassica carinata HOM05D001082 ORTHO05D005120 4.0e-06 57.4 145 29.0


User provided reference genes

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