Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 2.0e-280 968.4 471 100.0
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 2.7e-200 702.2 476 75.0
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 5.5e-161 571.6 347 82.7
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 2.1e-128 463.4 391 65.2
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 4.0e-127 459.1 433 58.2
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 3.7e-125 452.6 490 50.8
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 6.3e-125 451.8 485 52.2
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 1.4e-124 450.7 411 59.6
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 1.8e-124 450.3 482 50.2
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 5.4e-124 448.7 493 50.1
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 9.1e-124 448.0 392 59.4
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 5.9e-123 445.3 464 51.3
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 1.0e-122 444.5 465 52.5
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 1.0e-122 444.5 507 49.9
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 1.3e-122 444.1 491 50.1
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 2.3e-122 443.4 465 52.7
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 3.8e-122 442.6 391 59.8
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 1.9e-121 440.3 469 52.5
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 3.3e-121 439.5 488 50.6
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 4.2e-121 439.1 361 63.7
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 9.5e-121 438.0 361 63.2
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 9.5e-121 438.0 464 51.1
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 9.5e-121 438.0 485 51.3
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 2.1e-120 436.8 464 51.5
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 8.0e-120 434.9 477 50.7
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.8e-119 433.7 466 50.2
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 1.8e-119 433.7 463 51.6
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 6.8e-119 431.8 489 50.1
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 2.6e-118 429.9 479 50.5
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 3.4e-118 429.5 477 50.5
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 3.4e-118 429.5 413 56.7
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 1.1e-116 424.5 380 60.0
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.4e-116 424.1 483 49.7
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 5.4e-116 422.2 475 51.4
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 2.7e-115 419.9 486 49.4
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 4.5e-115 419.1 484 48.3
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 1.0e-114 417.9 484 48.6
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 6.6e-114 415.2 483 47.6
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 8.6e-114 414.8 337 62.6
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 1.9e-113 413.7 492 47.8
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 4.3e-113 412.5 466 49.1
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 1.2e-112 411.0 482 46.7
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 2.8e-112 409.8 386 57.8
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 6.1e-112 408.7 482 46.9
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 1.0e-111 407.9 484 45.5
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 1.0e-111 407.9 473 47.4
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 1.8e-111 407.1 387 55.8
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 1.8e-111 407.1 484 47.9
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 1.2e-110 404.4 486 48.4
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 1.5e-110 404.1 377 57.0
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 2.6e-110 403.3 501 47.1
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 2.6e-110 403.3 391 56.0
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 1.3e-109 401.0 483 46.4
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 1.3e-109 401.0 353 58.4
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 2.2e-109 400.2 370 57.0
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 2.9e-109 399.8 349 58.2
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 3.7e-109 399.4 421 53.0
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 1.1e-108 397.9 386 54.7
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 3.2e-108 396.4 477 47.8
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 1.2e-107 394.4 481 45.7
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.2e-107 394.4 483 47.6
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 1.2e-107 394.4 466 47.0
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 4.6e-107 392.5 378 55.0
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 6.0e-107 392.1 378 55.3
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 8.6e-106 388.3 485 45.2
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 3.3e-105 386.3 385 54.3
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 4.3e-105 386.0 485 45.2
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 7.3e-105 385.2 521 44.0
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 3.6e-104 382.9 484 45.7
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 6.2e-104 382.1 479 46.6
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 1.1e-103 381.3 484 45.9
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 4.0e-103 379.4 384 53.1
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 5.2e-103 379.0 384 55.5
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 8.9e-103 378.3 480 45.4
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 1.2e-102 377.9 397 52.4
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 1.5e-102 377.5 420 50.0
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 2.0e-102 377.1 482 46.5
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 2.4e-100 370.2 500 44.8
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 3.2e-100 369.8 498 44.8
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 3.9e-98 362.8 514 43.8
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.1e-97 361.3 407 48.4
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.9e-97 360.5 354 56.5
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 7.3e-97 358.6 356 56.5
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 1.2e-96 357.8 377 52.0
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 2.8e-96 356.7 419 46.8
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 8.1e-96 355.1 377 51.7
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 3.1e-95 353.2 386 52.6
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 3.4e-94 349.7 364 50.0
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 1.9e-92 344.0 282 63.1
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 4.1e-92 342.8 361 52.6
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 9.2e-92 341.7 327 56.6
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 1.5e-86 324.3 464 42.5
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 2.9e-85 320.1 296 58.4
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 3.8e-85 319.7 434 43.1
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 1.2e-78 298.1 363 46.8
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 5.8e-78 295.8 329 49.2
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 3.8e-77 293.1 361 46.5
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 4.6e-75 286.2 291 51.5
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 3.0e-74 283.5 328 47.9
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 2.9e-69 266.9 330 49.7
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 1.9e-68 264.2 479 35.7
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.5e-67 260.0 266 54.5
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 2.8e-64 250.4 430 38.4
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 1.8e-63 247.7 295 45.4
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 9.0e-63 245.4 227 56.4
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 2.9e-61 240.4 490 35.5
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.2e-60 236.9 182 62.6
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 1.6e-59 234.6 342 42.4
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.8e-58 231.1 183 62.3
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 5.7e-57 226.1 331 42.6
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 1.3e-53 214.9 193 58.0
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 1.9e-52 211.1 184 55.4
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 2.5e-52 210.7 295 43.4
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 2.5e-49 200.7 360 39.2
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 2.2e-45 187.6 184 52.2
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 6.5e-45 186.0 283 42.8
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 6.1e-43 179.5 225 47.6
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 6.3e-40 169.5 154 58.4
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 6.1e-35 152.9 151 53.6
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 1.8e-34 151.4 139 59.0
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 3.9e-34 150.2 430 31.9
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 1.7e-32 144.8 162 51.2
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 6.3e-32 142.9 143 52.4
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 2.2e-29 134.4 91 73.6
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.2e-29 134.4 108 58.3
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 1.9e-28 131.3 424 29.2
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 7.4e-25 119.4 90 62.2
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 1.8e-23 114.8 801 22.1
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 3.1e-23 114.0 87 66.7
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 1.2e-22 112.1 135 46.7
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 7.7e-22 109.4 82 67.1
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 8.5e-21 105.9 83 60.2
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 1.5e-20 105.1 95 57.9
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 4.7e-19 100.1 145 41.4
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 5.0e-13 80.1 274 27.4
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 4.7e-11 73.6 96 46.9
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 1.2e-09 68.9 350 24.6
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 2.2e-08 64.7 295 24.7
Cfa026016 Carpinus fangiana HOM05D000280 ORTHO05D000632 9.1e-07 59.3 124 32.3
ATR0594G209 Amborella trichopoda HOM05D005745 ORTHO05D006857 2.7e-06 57.8 33 75.8


User provided reference genes

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