Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 3.2e-129 466.8 501 100.0
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 2.2e-98 364.4 196 99.0
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 3.7e-93 347.1 197 93.9
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 2.6e-91 340.9 234 82.5
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 2.7e-88 330.9 196 88.3
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 3.5e-88 330.5 195 87.7
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 1.8e-87 328.2 196 87.8
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 5.1e-87 326.6 196 86.7
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 5.1e-87 326.6 196 86.7
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 1.1e-86 325.5 196 86.7
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 1.5e-86 325.1 196 86.7
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 1.9e-86 324.7 196 86.7
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 2.5e-86 324.3 194 86.6
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.3e-86 323.9 196 85.2
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 3.3e-86 323.9 196 87.2
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 4.3e-86 323.6 196 86.2
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 7.4e-86 322.8 196 87.8
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 7.4e-86 322.8 196 85.7
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 9.7e-86 322.4 196 84.7
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 9.7e-86 322.4 192 88.0
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.3e-85 322.0 196 84.7
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.3e-85 322.0 196 84.7
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.2e-85 321.2 196 84.7
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 2.8e-85 320.9 196 86.7
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 2.8e-85 320.9 196 86.7
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 4.8e-85 320.1 195 84.6
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 6.3e-85 319.7 196 85.2
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 6.3e-85 319.7 196 85.7
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 1.4e-84 318.5 196 85.2
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 1.4e-84 318.5 195 84.1
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 1.4e-84 318.5 196 85.2
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 1.8e-84 318.2 196 84.2
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 1.8e-84 318.2 196 84.2
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.8e-84 318.2 196 83.7
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 2.4e-84 317.8 196 83.7
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 3.1e-84 317.4 196 84.7
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 4.1e-84 317.0 205 83.4
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 5.3e-84 316.6 196 85.7
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 5.3e-84 316.6 194 85.6
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 1.2e-83 315.5 196 85.2
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 1.5e-83 315.1 195 83.1
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 1.5e-83 315.1 196 84.7
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 1.5e-83 315.1 196 84.2
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 2.0e-83 314.7 196 85.2
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 2.6e-83 314.3 196 85.2
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 3.4e-83 313.9 195 83.1
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 4.5e-83 313.5 196 85.2
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.0e-82 312.4 195 83.1
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 2.2e-82 311.2 197 83.8
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 2.2e-82 311.2 194 84.0
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 3.8e-82 310.5 196 83.7
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 8.5e-82 309.3 199 81.9
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 1.9e-81 308.1 196 81.6
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 1.9e-81 308.1 196 82.1
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 1.9e-81 308.1 196 81.6
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 2.5e-81 307.8 192 85.4
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 2.5e-81 307.8 192 85.4
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 2.5e-81 307.8 187 87.2
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 2.5e-81 307.8 196 81.6
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 4.2e-81 307.0 196 81.6
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 5.5e-81 306.6 196 80.6
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 5.5e-81 306.6 195 81.5
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 7.2e-81 306.2 197 82.2
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 7.2e-81 306.2 196 80.6
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 9.4e-81 305.8 196 80.1
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 9.4e-81 305.8 196 81.1
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 1.2e-80 305.4 196 81.1
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 1.2e-80 305.4 196 82.1
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 1.2e-80 305.4 196 82.1
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 2.7e-80 304.3 204 80.9
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 2.7e-80 304.3 195 81.0
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 7.9e-80 302.8 196 81.6
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 7.9e-80 302.8 193 81.9
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 1.0e-79 302.4 195 81.0
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 1.8e-79 301.6 197 80.2
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 1.8e-79 301.6 196 80.6
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 2.3e-79 301.2 196 80.6
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 3.0e-79 300.8 196 82.1
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 1.1e-78 298.9 197 79.7
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 5.7e-78 296.6 193 79.8
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 9.7e-78 295.8 197 79.2
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 9.7e-78 295.8 197 79.2
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 3.1e-76 290.8 196 77.6
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 4.1e-76 290.4 193 78.8
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 5.3e-76 290.0 196 77.0
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 2.6e-75 287.7 196 76.0
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 2.9e-74 284.3 196 75.0
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 5.5e-73 280.0 164 88.4
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 9.4e-73 279.3 196 73.0
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 1.0e-71 275.8 175 82.3
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 1.0e-71 275.8 186 78.0
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 2.3e-71 274.6 193 74.6
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 3.0e-71 274.2 164 86.0
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 5.7e-70 270.0 225 68.4
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 2.0e-67 261.5 164 81.1
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 1.3e-66 258.8 164 81.7
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 2.7e-64 251.1 196 66.8
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.8e-61 241.1 175 69.1
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 3.7e-61 240.7 185 66.5
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 1.4e-60 238.8 185 70.8
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 1.4e-60 238.8 185 64.3
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 1.6e-59 235.3 185 69.2
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 1.6e-59 235.3 191 63.9
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 7.2e-57 226.5 172 72.7
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 2.1e-56 224.9 140 84.3
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 7.0e-52 209.9 162 71.0
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 8.3e-45 186.4 180 58.3
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 3.5e-43 181.0 157 59.9
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 1.7e-34 152.1 94 81.9
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 1.5e-30 139.0 116 62.1
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 7.0e-28 130.2 102 71.6
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 2.5e-25 121.7 80 78.8
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 2.3e-23 115.2 70 85.7
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 8.9e-23 113.2 175 40.6
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 2.0e-22 112.1 77 76.6
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 3.4e-22 111.3 83 71.1
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 4.4e-22 110.9 119 56.3
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 7.8e-19 100.1 189 34.9
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.0e-18 99.8 107 51.4
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 1.5e-17 95.9 64 76.6
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 3.3e-17 94.7 57 78.9
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 4.3e-17 94.4 168 36.9
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 2.8e-16 91.7 63 74.6
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 1.8e-15 89.0 169 34.9
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 4.9e-13 80.9 67 62.7
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 1.9e-12 79.0 175 34.3
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 1.5e-09 69.3 64 50.0
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 9.6e-09 66.6 125 30.4
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 9.6e-09 66.6 125 30.4
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.8e-08 65.1 41 68.3
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 1.4e-07 62.8 50 66.0
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 5.2e-07 60.8 36 77.8
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 8.9e-07 60.1 33 81.8


User provided reference genes

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