Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 5.7e-247 857.1 412 100.0
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 9.2e-205 716.8 412 85.0
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 4.7e-201 704.5 412 84.2
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 5.6e-186 654.4 416 77.6
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 2.0e-167 592.8 404 74.5
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 8.5e-158 560.8 417 67.4
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 3.6e-156 555.4 416 66.8
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 2.4e-152 542.7 410 65.1
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 2.6e-151 539.3 416 64.9
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 1.3e-150 537.0 414 65.2
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 1.3e-150 537.0 411 64.2
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 6.5e-150 534.6 416 65.6
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 1.9e-149 533.1 418 65.1
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 7.2e-149 531.2 412 62.6
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 9.4e-149 530.8 415 65.1
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 4.7e-148 528.5 421 62.9
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 1.0e-147 527.3 417 63.1
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 3.0e-147 525.8 410 62.7
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 1.5e-146 523.5 415 63.6
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 7.4e-146 521.2 413 61.0
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 7.4e-146 521.2 433 61.4
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 1.7e-145 520.0 419 62.5
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 3.7e-145 518.8 417 61.2
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 6.3e-145 518.1 417 61.6
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 1.4e-144 516.9 413 63.2
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 2.4e-144 516.2 413 61.0
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 5.3e-144 515.0 483 57.1
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 7.0e-144 514.6 417 61.4
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 1.2e-143 513.8 416 61.1
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 1.5e-143 513.5 412 61.2
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 3.5e-143 512.3 426 62.0
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 1.7e-142 510.0 417 60.7
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 2.9e-142 509.2 416 60.6
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 3.8e-142 508.8 408 61.5
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 5.0e-142 508.4 412 60.0
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 6.5e-142 508.1 438 59.8
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.5e-141 506.9 451 57.0
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 3.2e-141 505.8 419 59.9
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 1.2e-140 503.8 410 60.0
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.6e-140 503.4 446 57.2
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 2.7e-140 502.7 410 60.7
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 1.4e-139 500.4 411 58.6
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 1.4e-139 500.4 411 59.1
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 3.0e-139 499.2 412 60.4
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 4.0e-139 498.8 409 58.4
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 6.7e-139 498.0 434 59.2
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 2.0e-138 496.5 413 59.8
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 2.8e-137 492.7 412 58.7
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 3.7e-137 492.3 413 59.3
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 6.3e-137 491.5 413 59.3
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 8.2e-137 491.1 409 57.7
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 1.1e-136 490.7 407 60.7
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 1.1e-136 490.7 415 59.0
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 4.1e-136 488.8 419 58.9
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 5.3e-136 488.4 413 57.9
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 5.3e-136 488.4 413 57.9
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 4.5e-135 485.3 411 58.2
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 1.7e-134 483.4 498 52.4
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 2.9e-134 482.6 412 60.4
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 6.5e-134 481.5 414 58.0
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 1.1e-133 480.7 527 51.6
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 2.5e-133 479.6 410 59.0
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 2.5e-133 479.6 414 60.6
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 7.2e-133 478.0 408 58.3
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 1.6e-132 476.9 354 65.8
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 1.0e-131 474.2 431 56.1
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 1.2e-130 470.7 409 58.9
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 4.4e-130 468.8 384 62.0
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 1.1e-128 464.2 408 57.4
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 7.0e-128 461.5 345 64.6
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 2.2e-126 456.4 345 64.3
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 8.5e-126 454.5 390 60.0
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 4.7e-124 448.7 406 53.2
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 2.3e-123 446.4 429 53.4
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 2.3e-123 446.4 414 54.8
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 9.8e-122 441.0 418 55.3
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 9.8e-122 441.0 416 54.1
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 1.7e-121 440.3 392 56.9
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 8.3e-121 438.0 381 57.5
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 7.0e-120 434.9 412 53.6
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 6.6e-118 428.3 412 53.9
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 1.2e-116 424.1 409 51.8
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 1.3e-113 414.1 410 54.6
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 1.3e-113 414.1 407 50.9
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 1.6e-111 407.1 497 47.3
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 2.4e-104 383.3 331 59.2
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 2.1e-100 370.2 441 47.6
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 4.1e-96 355.9 333 54.4
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 5.6e-93 345.5 247 66.4
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 8.9e-91 338.2 278 60.8
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 5.6e-85 318.9 409 43.5
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 8.9e-83 311.6 412 42.7
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 2.1e-79 300.4 408 39.5
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 1.0e-78 298.1 339 49.6
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 2.5e-77 293.5 334 48.5
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 9.9e-74 281.6 197 67.0
Psat5g014800 Pisum sativum HOM05D005790 ORTHO05D007464 4.2e-72 276.2 238 57.6
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 4.2e-72 276.2 240 57.1
Nitab4.5_0000402g0120 Nicotiana tabacum HOM05D005790 ORTHO05D007464 2.4e-67 260.4 237 57.0
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 2.2e-65 253.8 250 52.8
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 3.5e-63 246.5 195 58.5
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 5.1e-62 242.7 442 39.8
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 4.5e-58 229.6 173 61.8
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 1.3e-54 218.0 386 38.3
Cpa.g.sc140.27 Carica papaya HOM05D005790 ORTHO05D007464 1.8e-54 217.6 162 67.9
TPR.G30287 Trifolium pratense HOM05D005790 ORTHO05D007464 2.9e-49 200.3 158 60.1
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 2.5e-48 197.2 590 27.8
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 3.2e-48 196.8 405 35.3
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 5.5e-48 196.1 114 74.6
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 9.3e-48 195.3 123 71.5
Nitab4.5_0000402g0130 Nicotiana tabacum HOM05D005790 ORTHO05D007464 5.1e-46 189.5 148 62.8
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 1.5e-45 188.0 109 75.2
AagrBONN_evm.TU.Sc2ySwM_369.164 Anthoceros agrestis HOM05D005790 ORTHO05D007464 5.3e-43 179.5 274 39.1
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 5.9e-42 176.0 269 39.8
Aa31LG4G5860 Aethionema arabicum HOM05D005790 ORTHO05D007464 4.2e-40 169.9 99 76.8
SEGI_31412 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 2.1e-39 167.5 255 40.8
Cre02.g076850 Chlamydomonas reinhardtii HOM05D005790 ORTHO05D007464 4.5e-34 149.8 472 28.4
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 1.3e-33 148.3 235 40.0
Lj4C790T17 Lonicera japonica HOM05D005790 ORTHO05D007464 4.7e-31 139.8 79 84.8
MD15G1017900 Malus domestica HOM05D005790 ORTHO05D007464 3.7e-28 130.2 225 37.8
MD15G1018000 Malus domestica HOM05D005790 ORTHO05D007464 3.7e-28 130.2 225 37.8
HPP92_020941 Vanilla planifolia HOM05D005790 ORTHO05D007464 2.2e-25 120.9 142 46.5
MCO14G170 Micromonas commoda HOM05D005790 ORTHO05D007464 1.8e-22 111.3 468 25.4
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 5.2e-22 109.8 221 35.3
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 1.1e-16 92.0 450 26.7
SEGI_12232 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 1.2e-15 88.6 59 62.7
Cpa.g.sc140.30 Carica papaya HOM05D005790 ORTHO05D007464 3.6e-15 87.0 53 75.5
TAR625G0591 Trochodendron aralioides HOM05D000460 ORTHO05D000333 1.0e-14 85.5 110 47.3
HPP92_020940 Vanilla planifolia HOM05D005790 ORTHO05D007464 1.8e-11 74.7 82 47.6
Hma1.2p1_1776F.1_g301940 Hydrangea macrophylla HOM05D005790 ORTHO05D007464 3.5e-10 70.5 41 80.5
EL10Ac5g11429 Beta vulgaris HOM05D003769 ORTHO05D004521 3.8e-09 67.0 371 25.3
COL.COLO4_38433 Corchorus olitorius HOM05D005790 ORTHO05D030850 7.2e-08 62.8 31 77.4
CDE05G1505 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 6.1e-07 59.7 41 63.4
VMungo0331G1008 Vigna mungo HOM05D005790 ORTHO05D007464 1.4e-06 58.5 29 79.3
Ah.11g044930 Amaranthus hybridus HOM05D003769 ORTHO05D004521 1.8e-06 58.2 307 23.1
RhsimUnG0148700 Rhododendron simsii HOM05D000113 ORTHO05D002571 4.0e-06 57.0 33 75.8
TPR.G40727 Trifolium pratense HOM05D005790 ORTHO05D007464 5.2e-06 56.6 46 54.3


User provided reference genes

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