Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 0.0e+00 1268.4 611 100.0
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 0.0e+00 1138.3 651 86.0
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 0.0e+00 1136.3 678 84.4
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 4.3e-307 1057.4 649 78.9
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 4.4e-304 1047.3 650 78.0
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 6.6e-300 1033.5 651 76.3
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 1.1e-299 1032.7 650 77.7
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.9e-299 1031.9 650 76.3
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 3.3e-299 1031.2 650 75.7
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 9.5e-299 1029.6 651 76.0
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 2.1e-298 1028.5 650 76.3
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 1.8e-297 1025.4 651 75.7
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 1.8e-297 1025.4 651 76.3
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 3.1e-297 1024.6 651 76.3
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 4.0e-297 1024.2 650 75.7
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 5.2e-297 1023.8 650 74.6
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 6.8e-297 1023.5 651 75.4
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 8.9e-297 1023.1 650 76.3
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 5.8e-296 1020.4 651 75.0
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 2.2e-295 1018.5 651 76.0
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 2.9e-295 1018.1 655 75.7
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 6.4e-295 1016.9 650 75.5
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 2.4e-294 1015.0 651 74.8
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 5.4e-294 1013.8 650 74.6
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 7.1e-294 1013.4 651 75.6
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 9.2e-294 1013.1 649 75.5
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 2.7e-293 1011.5 650 75.8
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 3.0e-292 1008.1 653 73.7
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 3.9e-292 1007.7 650 76.2
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 8.6e-292 1006.5 656 73.9
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 1.2e-290 1002.7 655 74.5
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 2.8e-290 1001.5 654 74.6
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 3.6e-290 1001.1 654 74.6
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 6.2e-290 1000.3 651 75.1
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 6.2e-290 1000.3 651 73.7
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 6.9e-289 996.9 650 74.5
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 1.5e-288 995.7 651 74.7
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 4.4e-288 994.2 656 74.5
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 1.3e-287 992.6 650 74.5
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 1.1e-286 989.6 657 74.0
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 1.1e-286 989.6 654 73.9
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 1.1e-286 989.6 651 72.4
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 3.2e-286 988.0 654 73.2
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 2.1e-285 985.3 651 73.1
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 2.1e-285 985.3 651 73.3
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.3e-284 982.6 651 73.3
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 8.7e-284 979.9 653 72.9
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 1.1e-283 979.5 651 72.5
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.5e-283 979.2 651 72.5
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 2.5e-283 978.4 659 72.5
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 7.3e-283 976.9 676 71.6
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 2.1e-282 975.3 651 72.2
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 4.8e-282 974.2 658 72.2
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 1.1e-281 973.0 680 69.9
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 1.8e-281 972.2 604 77.2
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 1.8e-281 972.2 707 70.6
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 3.1e-281 971.5 657 72.5
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 5.3e-281 970.7 651 71.9
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 6.9e-281 970.3 651 72.4
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 2.0e-280 968.8 657 72.1
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 9.9e-280 966.5 651 71.4
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 9.9e-280 966.5 651 71.4
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 1.3e-279 966.1 651 72.0
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 1.7e-279 965.7 653 71.8
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 1.7e-279 965.7 656 72.0
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 1.7e-279 965.7 656 72.0
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 2.2e-279 965.3 651 71.3
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 4.9e-279 964.1 654 71.9
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 8.4e-279 963.4 658 72.0
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.1e-278 963.0 664 71.4
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 1.9e-278 962.2 651 71.1
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 2.4e-278 961.8 651 71.9
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 4.2e-278 961.1 655 71.9
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 4.6e-277 957.6 706 66.6
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 7.9e-277 956.8 530 88.1
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 1.1e-275 953.0 673 70.0
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 4.3e-275 951.0 679 69.1
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 2.1e-274 948.7 668 69.5
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 2.8e-274 948.3 655 70.8
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 3.7e-274 948.0 651 71.7
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 3.4e-272 941.4 656 70.0
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 6.4e-271 937.2 648 70.7
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 3.2e-270 934.9 674 68.2
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 7.9e-269 930.2 666 69.2
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 1.8e-268 929.1 656 69.7
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 7.4e-267 923.7 594 76.4
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 3.7e-266 921.4 635 72.3
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 1.4e-265 919.5 680 67.4
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 7.6e-264 913.7 653 69.8
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 2.9e-263 911.8 591 75.5
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 1.9e-262 909.1 660 69.1
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 2.1e-261 905.6 681 66.4
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 3.0e-260 901.7 666 66.5
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 1.5e-259 899.4 702 65.4
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 6.3e-258 894.0 659 66.8
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 4.1e-257 891.3 660 66.5
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 1.2e-256 889.8 660 66.7
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 2.0e-256 889.0 668 65.4
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 7.2e-254 880.6 667 65.4
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 3.0e-252 875.2 663 66.4
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.8e-249 865.9 665 64.7
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 2.4e-249 865.5 642 67.6
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 7.7e-248 860.5 667 65.5
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 3.8e-247 858.2 657 65.0
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 8.5e-247 857.1 665 63.5
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 1.9e-246 855.9 674 64.5
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 5.5e-246 854.4 549 75.2
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 1.6e-245 852.8 634 67.4
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 4.7e-245 851.3 566 72.6
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 2.6e-243 845.5 566 72.4
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 1.1e-238 830.1 663 63.0
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 2.0e-232 809.3 805 56.4
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 1.4e-225 786.6 596 67.8
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 3.1e-225 785.4 644 60.7
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 6.5e-223 777.7 867 51.1
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 1.1e-222 776.9 500 73.6
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 8.0e-221 770.8 632 60.8
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 9.5e-214 747.3 665 57.6
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 4.1e-209 731.9 485 72.2
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 2.0e-195 686.4 527 66.8
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 1.2e-176 624.0 499 63.9
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 6.6e-175 618.2 660 50.8
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 9.6e-174 614.4 644 52.8
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 7.1e-169 598.2 708 45.5
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 6.6e-167 591.7 668 49.3
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.4e-164 583.9 635 51.0
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 3.2e-161 572.8 635 47.9
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 3.4e-155 552.7 509 55.8
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 5.8e-155 552.0 389 69.4
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 3.7e-149 532.7 363 71.3
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 4.8e-149 532.3 337 77.4
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 6.5e-146 521.9 676 45.0
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 5.3e-132 475.7 337 70.0
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.3e-130 471.1 637 45.2
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 2.8e-125 453.4 278 78.4
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 4.8e-125 452.6 276 78.3
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 1.1e-121 441.4 320 68.1
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.8e-111 407.5 626 40.6
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 4.0e-111 406.4 628 39.6
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 6.5e-106 389.0 232 78.4
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 8.5e-106 388.7 342 61.7
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 1.8e-95 354.4 419 50.1
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 2.8e-88 330.5 384 51.0
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 1.2e-78 298.5 308 53.2
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 3.0e-74 283.9 228 61.4
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 2.8e-72 277.3 431 38.1
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 4.1e-68 263.5 478 37.0
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 1.6e-67 261.5 495 34.9
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 7.3e-65 252.7 666 28.5
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 3.1e-63 247.3 523 37.3
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 2.2e-61 241.1 231 51.9
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.0e-58 230.7 272 47.1
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 9.9e-54 215.7 208 53.8
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 1.3e-34 152.1 228 42.5
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 8.2e-32 142.9 113 62.8
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 1.8e-31 141.7 112 63.4
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 4.0e-31 140.6 138 59.4
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 5.8e-30 136.7 232 40.5
TPR.G30960 Trifolium pratense HOM05D003985 ORTHO05D005253 1.9e-28 131.7 125 55.2
arahy.Tifrunner.gnm1.ann1.AXX9EX Arachis hypogaea HOM05D003985 ORTHO05D023785 9.3e-28 129.4 79 72.2
Lalb_Chr08g0243671 Lupinus albus HOM05D003985 ORTHO05D044681 2.8e-24 117.9 59 79.7
TPR.G20415 Trifolium pratense HOM05D003985 ORTHO05D038560 3.7e-24 117.5 64 82.8
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 1.7e-21 108.6 119 50.4
Cc01_g20960 Coffea canephora HOM05D003985 ORTHO05D044681 2.9e-21 107.8 61 68.9
BcaC09g51897 Brassica carinata HOM05D003985 ORTHO05D023785 6.1e-19 100.1 92 56.5
Zm00001eb086470 Zea mays HOM05D000879 ORTHO05D002043 8.8e-18 96.3 148 39.2
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.7e-13 82.0 50 76.0
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 1.7e-13 82.0 50 78.0
TAR636G2548 Trochodendron aralioides HOM05D003985 ORTHO05D031326 2.2e-13 81.6 50 78.0
Ca_27914_v3 Cicer arietinum L. HOM05D003985 ORTHO05D044347 6.5e-13 80.1 47 78.7
TPR.G39898 Trifolium pratense HOM05D003985 ORTHO05D044347 6.5e-13 80.1 53 64.2
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 3.2e-12 77.8 47 83.0
BolC1t00770H Brassica oleracea HOM05D003985 ORTHO05D023785 1.8e-10 72.0 74 50.0
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 2.3e-10 71.6 59 59.3
BcaB02g10473 Brassica carinata HOM05D012099 ORTHO05D014504 3.0e-10 71.2 81 48.1
AL7G31410 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 3.9e-10 70.9 42 76.2
QL03p050850 Quercus lobata HOM05D000143 ORTHO05D000072 3.9e-10 70.9 47 72.3
CSS0001762 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D023785 1.1e-09 69.3 51 66.7
AL6G47194 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 2.6e-09 68.2 37 81.1
AL4G14710 Arabidopsis lyrata HOM05D003985 ORTHO05D038560 3.7e-08 64.3 105 41.9
SMO334G0030 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 8.2e-08 63.2 48 58.3


User provided reference genes

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