Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G012130 Citrullus lanatus HOM05D004582 ORTHO05D005507 8.3e-148 526.9 253 100.0
MELO3C023752.2 Cucumis melo HOM05D004582 ORTHO05D005507 1.1e-54 217.6 100 99.0
CsaV3_3G020290 Cucumis sativus L. HOM05D004582 ORTHO05D005507 1.1e-54 217.6 100 99.0
Sed0002882 Sechium edule HOM05D004582 ORTHO05D005507 1.8e-54 216.9 100 99.0
Sed0027851 Sechium edule HOM05D004582 ORTHO05D005507 3.1e-54 216.1 100 98.0
Manes.01G004880 Manihot esculenta HOM05D004582 ORTHO05D005507 1.6e-53 213.8 100 96.0
Ciclev10017231m.g Citrus clementina HOM05D004582 ORTHO05D005507 2.0e-53 213.4 100 96.0
Duzib132G0727 Durio zibethinus HOM05D004582 ORTHO05D005507 4.5e-53 212.2 100 95.0
Gohir.A04G109900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.0e-52 211.1 100 95.0
Gohir.D04G150100 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.0e-52 211.1 100 95.0
Gorai.012G136700 Gossypium raimondii HOM05D004582 ORTHO05D005507 1.0e-52 211.1 100 95.0
Duzib248G0155 Durio zibethinus HOM05D004582 ORTHO05D005507 1.3e-52 210.7 100 95.0
Thecc.02G151700 Theobroma cacao HOM05D004582 ORTHO05D005507 1.7e-52 210.3 100 95.0
CANSAT78G1495 Cannabis sativa HOM05D004582 ORTHO05D005507 2.9e-52 209.5 100 93.0
Cfa005243 Carpinus fangiana HOM05D004582 ORTHO05D005507 5.0e-52 208.8 100 93.0
Cfa008860 Carpinus fangiana HOM05D002331 ORTHO05D002624 5.0e-52 208.8 100 93.0
Potri.010G255000 Populus trichocarpa HOM05D004582 ORTHO05D005507 6.5e-52 208.4 100 94.0
Gohir.D13G059000 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.5e-51 207.2 102 91.2
THA.LOC104800345 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 1.5e-51 207.2 102 90.2
THA.LOC104819361 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 1.9e-51 206.8 102 90.2
Solyc04g008750.3 Solanum lycopersicum HOM05D004582 ORTHO05D005507 2.5e-51 206.5 100 92.0
Sopen04g003930 Solanum pennellii HOM05D004582 ORTHO05D005507 2.5e-51 206.5 100 92.0
GSVIVG01034346001 Vitis vinifera HOM05D004582 ORTHO05D005507 2.5e-51 206.5 95 96.8
COL.COLO4_33156 Corchorus olitorius HOM05D004582 ORTHO05D005507 3.3e-51 206.1 115 80.9
PGSC0003DMG400025297 Solanum tuberosum HOM05D004582 ORTHO05D005507 3.3e-51 206.1 100 92.0
Atru.chr6.1863 Acer truncatum HOM05D004582 ORTHO05D005507 5.5e-51 205.3 100 93.0
CSS0028000 Camellia sinensis var. sinensis HOM05D004582 ORTHO05D005507 5.5e-51 205.3 100 95.0
Potri.008G002400 Populus trichocarpa HOM05D004582 ORTHO05D005507 5.5e-51 205.3 100 93.0
Cc11_g00370 Coffea canephora HOM05D004582 ORTHO05D005507 9.5e-51 204.5 97 94.8
Lalb_Chr10g0094681 Lupinus albus HOM05D004582 ORTHO05D005507 9.5e-51 204.5 102 91.2
vmacro00989 Vaccinium macrocarpon HOM05D004582 ORTHO05D005507 9.5e-51 204.5 95 96.8
Gohir.A13G062900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 2.1e-50 203.4 102 89.2
CiPaw.06G093300 Carya illinoinensis HOM05D004582 ORTHO05D005507 2.8e-50 203.0 100 91.0
Eucgr.G02614 Eucalyptus grandis HOM05D004582 ORTHO05D005507 2.8e-50 203.0 99 91.9
Actinidia04370 Actinidia chinensis HOM05D004582 ORTHO05D005507 3.6e-50 202.6 99 91.9
Atru.chr11.31 Acer truncatum HOM05D004582 ORTHO05D005507 6.1e-50 201.8 100 91.0
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 6.1e-50 201.8 95 95.8
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 6.1e-50 201.8 95 95.8
Carub.0008s2444 Capsella rubella HOM05D004582 ORTHO05D005507 1.0e-49 201.1 102 85.3
Glyma.17G000400 Glycine max HOM05D004582 ORTHO05D005507 1.0e-49 201.1 100 90.0
AL8G40820 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 1.4e-49 200.7 102 86.3
AT5G63670 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 1.4e-49 200.7 102 86.3
CAN.G419.18 Capsicum annuum HOM05D004582 ORTHO05D005507 1.4e-49 200.7 95 93.7
Thhalv10005155m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 1.4e-49 200.7 102 86.3
Sp2g26760 Schrenkiella parvula HOM05D004582 ORTHO05D005507 1.4e-49 200.7 102 86.3
VMungo0251G1823 Vigna mungo HOM05D000329 ORTHO05D002813 1.4e-49 200.7 100 90.0
Atru.chr11.27 Acer truncatum HOM05D004582 ORTHO05D005507 2.3e-49 199.9 100 90.0
DCAR_026806 Daucus carota HOM05D004582 ORTHO05D005507 3.0e-49 199.5 103 87.4
Aa31LG3G17960 Aethionema arabicum HOM05D004582 ORTHO05D005507 4.0e-49 199.1 102 84.3
Medtr3g092730 Medicago truncatula HOM05D004582 ORTHO05D005507 4.0e-49 199.1 100 89.0
Medtr3g092770 Medicago truncatula HOM05D004582 ORTHO05D005507 4.0e-49 199.1 100 89.0
CARHR278210 Cardamine hirsuta HOM05D004582 ORTHO05D005507 5.2e-49 198.7 102 85.3
PGR142G2001 Punica granatum HOM05D004582 ORTHO05D005507 5.2e-49 198.7 98 90.8
TWI15G0512 Tripterygium wilfordii HOM05D004582 ORTHO05D005507 5.2e-49 198.7 99 90.9
Aa31LG10G11080 Aethionema arabicum HOM05D004582 ORTHO05D005507 6.8e-49 198.4 102 84.3
Aa31LG1G18160 Aethionema arabicum HOM05D004582 ORTHO05D005507 6.8e-49 198.4 102 84.3
Carub.0006s0753 Capsella rubella HOM05D004582 ORTHO05D005507 6.8e-49 198.4 102 83.3
Glyma.07G274100 Glycine max HOM05D004582 ORTHO05D005507 6.8e-49 198.4 100 89.0
Phvul.003G004200 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 6.8e-49 198.4 100 89.0
Phvul.001G068300 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 8.9e-49 198.0 100 89.0
Hund08683 Selenicereus undatus HOM05D004582 ORTHO05D005507 8.9e-49 198.0 100 90.0
Psat5g071960 Pisum sativum HOM05D004582 ORTHO05D005507 1.2e-48 197.6 100 88.0
Ca_16312_v3 Cicer arietinum L. HOM05D004582 ORTHO05D005507 1.5e-48 197.2 98 89.8
SGA_v2.0_scaffold231G43443 Striga asiatica HOM05D004582 ORTHO05D005507 1.5e-48 197.2 95 90.5
SGA_v2.0_scaffold417G51254 Striga asiatica HOM05D004582 ORTHO05D005507 1.5e-48 197.2 95 90.5
TAR629G2421 Trochodendron aralioides HOM05D004582 ORTHO05D005507 1.5e-48 197.2 102 88.2
AT5G08565 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 2.0e-48 196.8 102 82.4
BcaB07g29700 Brassica carinata HOM05D004582 ORTHO05D005507 2.0e-48 196.8 100 86.0
BcaC03g18219 Brassica carinata HOM05D004582 ORTHO05D005507 2.0e-48 196.8 100 86.0
A02p42940 Brassica napus HOM05D004582 ORTHO05D005507 2.0e-48 196.8 100 86.0
C02p62880 Brassica napus HOM05D004582 ORTHO05D005507 2.0e-48 196.8 100 86.0
BraA02t09217Z Brassica rapa HOM05D004582 ORTHO05D005507 2.0e-48 196.8 100 86.0
MSTRG.25043 Avicennia marina HOM05D004582 ORTHO05D005507 2.6e-48 196.4 95 90.5
MBI11_g25051_MAGBIO Magnolia biondii HOM05D004582 ORTHO05D005507 4.4e-48 195.7 100 89.0
Lsat_1_v5_gn_1_108541 Lactuca sativa HOM05D004582 ORTHO05D005507 5.7e-48 195.3 97 90.7
Migut.N02765 Erythranthe guttata HOM05D004582 ORTHO05D005507 7.5e-48 194.9 95 91.6
Lj6g0014483 Lotus japonicus HOM05D004582 ORTHO05D005507 7.5e-48 194.9 100 85.0
Sc06g0007770 Simmondsia chinensis HOM05D004582 ORTHO05D005507 7.5e-48 194.9 100 89.0
AL6G19290 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 9.8e-48 194.5 100 83.0
Peaxi162Scf00329g00317 Petunia axillaris HOM05D004582 ORTHO05D005507 9.8e-48 194.5 97 89.7
HanXRQChr15g0475831 Helianthus annuus HOM05D004582 ORTHO05D005507 1.3e-47 194.1 97 92.8
MSTRG.1036 Avicennia marina HOM05D004582 ORTHO05D005507 3.7e-47 192.6 98 85.7
Nn8g39808 Nelumbo nucifera HOM05D004582 ORTHO05D005507 3.7e-47 192.6 106 85.8
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 6.3e-47 191.8 95 90.5
MD09G1278200 Malus domestica HOM05D004582 ORTHO05D005507 8.3e-47 191.4 98 84.7
SalBow6G5789 Salvia bowleyana HOM05D004582 ORTHO05D005507 8.3e-47 191.4 95 88.4
SalBow8G4318 Salvia bowleyana HOM05D004582 ORTHO05D005507 8.3e-47 191.4 95 88.4
TPR.G31176 Trifolium pratense HOM05D004582 ORTHO05D005507 8.3e-47 191.4 100 84.0
ECA246G1034 Erigeron canadensis HOM05D004582 ORTHO05D005507 1.4e-46 190.7 97 88.7
Nitab4.5_0000129g0010 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.4e-46 190.7 95 90.5
Sp6g34300 Schrenkiella parvula HOM05D004582 ORTHO05D005507 1.4e-46 190.7 102 80.4
Gorai.013G066800 Gossypium raimondii HOM05D004582 ORTHO05D005507 2.4e-46 189.9 138 67.4
MD17G1271200 Malus domestica HOM05D004582 ORTHO05D005507 3.1e-46 189.5 96 85.4
MD04G1047800 Malus domestica HOM05D004582 ORTHO05D005507 7.0e-46 188.3 101 85.1
unitig_749.g13837 Utricularia gibba HOM05D004582 ORTHO05D005507 1.6e-45 187.2 97 83.5
Prupe.3G015100 Prunus persica HOM05D004582 ORTHO05D005507 2.0e-45 186.8 96 85.4
BcaB01g05582 Brassica carinata HOM05D004582 ORTHO05D005507 2.7e-45 186.4 102 81.4
HPP92_027251 Vanilla planifolia HOM05D004582 ORTHO05D005507 4.5e-45 185.7 95 85.3
RcHm_v2.0_Chr4g0406241 Rosa chinensis HOM05D004582 ORTHO05D005507 5.9e-45 185.3 99 85.9
BcaB01g05655 Brassica carinata HOM05D004582 ORTHO05D005507 7.8e-45 184.9 102 80.4
A03p03980 Brassica napus HOM05D004582 ORTHO05D005507 7.8e-45 184.9 102 80.4
C03p04450 Brassica napus HOM05D004582 ORTHO05D005507 7.8e-45 184.9 102 80.4
AUR62032890 Chenopodium quinoa HOM05D004582 ORTHO05D005507 3.8e-44 182.6 100 85.0
Dinv17660 Davidia involucrata HOM05D004582 ORTHO05D005507 3.8e-44 182.6 91 89.0
FvH4_4g10630 Fragaria vesca HOM05D004582 ORTHO05D005507 3.8e-44 182.6 99 84.8
FAN07G0418 Fragaria x ananassa HOM05D004582 ORTHO05D005507 3.8e-44 182.6 99 84.8
FAN12G0218 Fragaria x ananassa HOM05D004582 ORTHO05D005507 3.8e-44 182.6 99 84.8
FAN12G1626 Fragaria x ananassa HOM05D004582 ORTHO05D005507 3.8e-44 182.6 99 84.8
FAN17G0627 Fragaria x ananassa HOM05D004582 ORTHO05D005507 3.8e-44 182.6 99 84.8
PSO541G0162 Papaver somniferum HOM05D004582 ORTHO05D005507 3.8e-44 182.6 95 87.4
PSO675G8561 Papaver somniferum HOM05D004582 ORTHO05D005507 3.8e-44 182.6 95 87.4
ATR0693G307 Amborella trichopoda HOM05D004582 ORTHO05D005507 6.6e-44 181.8 95 82.1
Aqoxy3G01747 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 1.1e-43 181.0 97 83.5
Os07g0623400 Oryza sativa ssp. japonica HOM05D004582 ORTHO05D005507 1.1e-43 181.0 95 82.1
Aqoxy5G02794 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 1.9e-43 180.3 96 84.4
SEGI_05202 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 7.3e-43 178.3 95 78.9
PSO339G5842 Papaver somniferum HOM05D004582 ORTHO05D005507 4.7e-42 175.6 100 82.0
FAN22G0072 Fragaria x ananassa HOM05D004582 ORTHO05D005507 3.0e-41 172.9 99 82.8
Ah.11g040470 Amaranthus hybridus HOM05D004582 ORTHO05D005507 4.0e-41 172.6 134 64.9
HanXRQChr01g0026751 Helianthus annuus HOM05D004582 ORTHO05D005507 5.8e-40 168.7 95 75.8
HanXRQChr01g0026901 Helianthus annuus HOM05D004582 ORTHO05D005507 5.8e-40 168.7 95 75.8
SalBow6G4393 Salvia bowleyana HOM05D004582 ORTHO05D005507 2.9e-39 166.4 99 72.7
SalBow8G4232 Salvia bowleyana HOM05D004582 ORTHO05D005507 2.9e-39 166.4 99 72.7
QL03p073673 Quercus lobata HOM05D004582 ORTHO05D005507 1.1e-38 164.5 75 94.7
SGA_v2.0_scaffold14G06942 Striga asiatica HOM05D004582 ORTHO05D005507 1.1e-38 164.5 128 60.2
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis HOM05D004582 ORTHO05D005507 2.4e-38 163.3 95 72.6
BolC2t12361H Brassica oleracea HOM05D004582 ORTHO05D005507 4.1e-38 162.5 111 69.4
Pp3c6_2640 Physcomitrium patens HOM05D004582 ORTHO05D005507 1.2e-37 161.0 95 70.5
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 2.7e-37 159.8 79 87.3
Oeu039967.1 Olea europaea HOM05D004582 ORTHO05D005507 2.7e-37 159.8 79 87.3
CiPaw.05G123600 Carya illinoinensis HOM05D004582 ORTHO05D005507 4.6e-37 159.1 79 89.9
EL10Ac9g23021 Beta vulgaris HOM05D004582 ORTHO05D005507 6.0e-37 158.7 80 90.0
Mapoly0092s0011 Marchantia polymorpha HOM05D004582 ORTHO05D005507 6.0e-37 158.7 95 69.5
Mapoly0166s0006 Marchantia polymorpha HOM05D004582 ORTHO05D005507 2.3e-36 156.8 94 70.2
SMO358G0649 Selaginella moellendorffii HOM05D004582 ORTHO05D005507 6.6e-36 155.2 96 69.8
ATR0772G012 Amborella trichopoda HOM05D004582 ORTHO05D005507 1.9e-35 153.7 74 87.8
Thhalv10015347m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 2.1e-34 150.2 79 82.3
SEGI_39424 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 2.6e-32 143.3 74 81.1
CARHR204400 Cardamine hirsuta HOM05D004582 ORTHO05D005507 3.4e-32 142.9 82 74.4
MCO11G500 Micromonas commoda HOM05D004582 ORTHO05D005507 4.1e-30 136.0 95 55.8
Sabra10G0198500 Salix brachista HOM05D004582 ORTHO05D005507 2.0e-29 133.7 100 70.0
Sc06g0007290 Simmondsia chinensis HOM05D004582 ORTHO05D005507 2.3e-28 130.2 100 69.0
PRCOL_00005197 Prasinoderma coloniale HOM05D004582 ORTHO05D005507 5.6e-27 125.6 95 53.7
CBR_g44398 Chara braunii HOM05D004582 ORTHO05D005507 8.1e-26 121.7 79 64.6
Nitab4.5_0008730g0050 Nicotiana tabacum HOM05D004582 ORTHO05D005507 6.4e-23 112.1 74 73.0
Nitab4.5_0000129g0060 Nicotiana tabacum HOM05D004582 ORTHO05D005507 8.3e-23 111.7 75 70.7
Lj5g0002326 Lotus japonicus HOM05D004582 ORTHO05D005507 2.7e-21 106.7 63 69.8
Lj5g0003678 Lotus japonicus HOM05D004582 ORTHO05D005507 2.7e-21 106.7 63 69.8
Lj5g0005298 Lotus japonicus HOM05D004582 ORTHO05D005507 2.7e-21 106.7 63 69.8
MD07G1114100 Malus domestica HOM05D004582 ORTHO05D005507 1.2e-18 97.8 62 67.7
BcaB01g05656 Brassica carinata HOM05D000467 ORTHO05D000379 4.7e-18 95.9 61 72.1
Cre02.g116300 Chlamydomonas reinhardtii HOM05D004582 ORTHO05D005507 6.8e-17 92.0 115 40.0
Haze_26483 Corylus avellana HOM05D004582 ORTHO05D005507 2.0e-16 90.5 88 44.3
Haze_11883 Corylus avellana HOM05D004582 ORTHO05D005507 7.6e-16 88.6 79 60.8
Lsat_1_v5_gn_1_108420 Lactuca sativa HOM05D004582 ORTHO05D005507 1.2e-13 81.3 41 90.2
Cfa023443 Carpinus fangiana HOM05D004582 ORTHO05D123741 1.8e-09 67.4 70 41.4
Nitab4.5_0011163g0030 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.5e-08 64.3 74 48.6
Rhsim12G0090000 Rhododendron simsii HOM05D004582 ORTHO05D005507 2.6e-08 63.5 138 33.3
ClCG04G001850 Citrullus lanatus HOM05D000189 ORTHO05D004078 2.2e-07 60.5 68 60.3


User provided reference genes

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