Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G010900 Citrullus lanatus HOM05D005540 ORTHO05D006932 1.2e-180 636.3 319 100.0
CsaV3_3G021680 Cucumis sativus L. HOM05D005540 ORTHO05D006932 8.0e-164 580.5 319 91.5
Sed0009967 Sechium edule HOM05D005540 ORTHO05D006932 5.9e-159 564.3 318 88.7
vmacro18057 Vaccinium macrocarpon HOM05D005540 ORTHO05D006932 2.4e-152 542.3 319 82.4
RcHm_v2.0_Chr2g0122561 Rosa chinensis HOM05D005540 ORTHO05D006932 4.1e-152 541.6 315 84.4
CiPaw.03G067900 Carya illinoinensis HOM05D005540 ORTHO05D006932 3.9e-150 535.0 319 84.0
Dinv14871 Davidia involucrata HOM05D005540 ORTHO05D006932 2.5e-149 532.3 319 84.0
Atru.chr4.1672 Acer truncatum HOM05D005540 ORTHO05D006932 3.3e-149 531.9 319 83.7
CANSAT78G2033 Cannabis sativa HOM05D005540 ORTHO05D006932 4.3e-149 531.6 319 83.7
Nitab4.5_0004399g0070 Nicotiana tabacum HOM05D005540 ORTHO05D006932 2.1e-148 529.3 330 80.3
TPR.G3482 Trifolium pratense HOM05D005540 ORTHO05D006932 2.8e-148 528.9 319 81.8
CSS0010845 Camellia sinensis var. sinensis HOM05D005540 ORTHO05D006932 8.0e-148 527.3 319 82.8
Cfa007847 Carpinus fangiana HOM05D005540 ORTHO05D006932 3.1e-147 525.4 319 82.8
COL.COLO4_15705 Corchorus olitorius HOM05D005540 ORTHO05D006932 3.1e-147 525.4 315 83.5
Sed0014193 Sechium edule HOM05D005540 ORTHO05D006932 4.0e-147 525.0 320 83.4
Eucgr.F02818 Eucalyptus grandis HOM05D005540 ORTHO05D006932 6.8e-147 524.2 318 82.7
Lalb_Chr18g0053271 Lupinus albus HOM05D005540 ORTHO05D006932 6.8e-147 524.2 319 82.4
LjContig00141g0003223 Lotus japonicus HOM05D005540 ORTHO05D006932 8.9e-147 523.9 319 81.2
VMungo1383G3344 Vigna mungo HOM05D005540 ORTHO05D006932 8.9e-147 523.9 319 82.1
Phvul.001G232200 Phaseolus vulgaris HOM05D005540 ORTHO05D006932 1.5e-146 523.1 319 83.1
Potri.017G129000 Populus trichocarpa HOM05D005540 ORTHO05D006932 2.6e-146 522.3 319 81.5
Medtr5g079730 Medicago truncatula HOM05D005540 ORTHO05D006932 5.8e-146 521.2 319 80.9
TWI77G0639 Tripterygium wilfordii HOM05D005540 ORTHO05D006932 7.5e-146 520.8 319 81.2
BraA04t16769Z Brassica rapa HOM05D005540 ORTHO05D006932 9.8e-146 520.4 318 82.1
Ciclev10012086m.g Citrus clementina HOM05D005540 ORTHO05D006932 9.8e-146 520.4 319 82.1
Glyma.11G218700 Glycine max HOM05D005540 ORTHO05D006932 9.8e-146 520.4 319 81.8
Manes.07G054300 Manihot esculenta HOM05D005540 ORTHO05D006932 1.3e-145 520.0 319 81.5
C04p44790 Brassica napus HOM05D005540 ORTHO05D006932 2.2e-145 519.2 318 81.8
BcaC02g09619 Brassica carinata HOM05D005540 ORTHO05D006932 2.9e-145 518.8 318 81.8
Thecc.04G122100 Theobroma cacao HOM05D005540 ORTHO05D006932 3.7e-145 518.5 316 82.6
Duzib138G0816 Durio zibethinus HOM05D005540 ORTHO05D006932 4.9e-145 518.1 318 81.8
Glyma.18G038600 Glycine max HOM05D005540 ORTHO05D006932 1.1e-144 516.9 319 81.2
Ca_05867_v3 Cicer arietinum L. HOM05D005540 ORTHO05D006932 1.9e-144 516.2 319 79.6
BcaB06g27151 Brassica carinata HOM05D005540 ORTHO05D006932 2.4e-144 515.8 318 81.1
A04p11070 Brassica napus HOM05D005540 ORTHO05D006932 2.4e-144 515.8 319 81.8
TAR629G0151 Trochodendron aralioides HOM05D005540 ORTHO05D006932 2.4e-144 515.8 319 81.2
BolC4t26053H Brassica oleracea HOM05D005540 ORTHO05D006932 7.0e-144 514.2 319 81.5
GSVIVG01030869001 Vitis vinifera HOM05D005540 ORTHO05D006932 1.2e-143 513.5 316 81.0
Solyc02g091340.4 Solanum lycopersicum HOM05D005540 ORTHO05D006932 1.6e-143 513.1 317 81.4
Sopen02g035960 Solanum pennellii HOM05D005540 ORTHO05D006932 1.6e-143 513.1 317 81.4
Psat2g040920 Pisum sativum HOM05D005540 ORTHO05D006932 2.0e-143 512.7 319 79.6
Thhalv10027854m.g Eutrema salsugineum HOM05D005540 ORTHO05D006932 2.7e-143 512.3 318 80.5
Gohir.D11G168100 Gossypium hirsutum HOM05D005540 ORTHO05D006932 4.6e-143 511.5 316 82.0
Gorai.007G179400 Gossypium raimondii HOM05D005540 ORTHO05D006932 4.6e-143 511.5 316 82.0
THA.LOC104822414 Tarenaya hassleriana HOM05D005540 ORTHO05D006932 4.6e-143 511.5 317 80.8
Carub.0007s3304 Capsella rubella HOM05D005540 ORTHO05D006932 2.3e-142 509.2 318 80.2
CARHR214890 Cardamine hirsuta HOM05D005540 ORTHO05D006932 2.3e-142 509.2 318 80.2
ECA232G3523 Erigeron canadensis HOM05D005540 ORTHO05D006932 2.3e-142 509.2 317 80.8
MSTRG.23613 Avicennia marina HOM05D005540 ORTHO05D006932 5.0e-142 508.1 317 80.1
AT5G37850 Arabidopsis thaliana HOM05D005540 ORTHO05D006932 6.6e-142 507.7 318 80.2
Sp7g04170 Schrenkiella parvula HOM05D005540 ORTHO05D006932 8.6e-142 507.3 318 79.6
Actinidia39198 Actinidia chinensis HOM05D005540 ORTHO05D006932 1.1e-141 506.9 309 82.8
Aqoxy3G00138 Aquilegia oxysepala HOM05D005540 ORTHO05D006932 1.1e-141 506.9 319 80.6
Migut.H00866 Erythranthe guttata HOM05D005540 ORTHO05D006932 1.1e-141 506.9 317 79.5
Lj4A178T43 Lonicera japonica HOM05D005540 ORTHO05D006932 1.1e-141 506.9 340 77.4
Gohir.A11G161800 Gossypium hirsutum HOM05D005540 ORTHO05D006932 1.5e-141 506.5 318 81.4
AL7G46750 Arabidopsis lyrata HOM05D005540 ORTHO05D006932 1.9e-141 506.1 318 80.2
PGR004G0611 Punica granatum HOM05D005540 ORTHO05D006932 9.5e-141 503.8 317 79.5
Aa31LG9G17310 Aethionema arabicum HOM05D005540 ORTHO05D006932 1.2e-140 503.4 318 79.9
Cc07_g08210 Coffea canephora HOM05D005540 ORTHO05D006932 6.2e-140 501.1 322 78.9
PSO017G2970 Papaver somniferum HOM05D005540 ORTHO05D006932 5.2e-139 498.0 317 78.2
FAN28G0493 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.7e-137 493.0 376 69.9
Sabra17G0107500 Salix brachista HOM05D005540 ORTHO05D006932 4.9e-137 491.5 331 75.2
arahy.Tifrunner.gnm1.ann1.A8AWVV Arachis hypogaea HOM05D005540 ORTHO05D006932 1.1e-136 490.3 319 77.4
Zm00001eb135500 Zea mays HOM05D005540 ORTHO05D006932 1.9e-136 489.6 315 78.1
arahy.Tifrunner.gnm1.ann1.IJ36EI Arachis hypogaea HOM05D005540 ORTHO05D006932 2.4e-136 489.2 319 77.4
Prupe.3G158100 Prunus persica HOM05D005540 ORTHO05D006932 3.2e-136 488.8 317 78.5
CAN.G625.83 Capsicum annuum HOM05D005540 ORTHO05D006932 1.6e-135 486.5 307 79.8
ATR0686G023 Amborella trichopoda HOM05D005540 ORTHO05D006932 1.7e-134 483.0 309 78.6
Os12g0600400 Oryza sativa ssp. japonica HOM05D005540 ORTHO05D006932 1.7e-134 483.0 317 76.3
Nitab4.5_0002248g0040 Nicotiana tabacum HOM05D005540 ORTHO05D006932 4.7e-132 474.9 321 76.6
Lsat_1_v5_gn_4_154720 Lactuca sativa HOM05D005540 ORTHO05D006932 1.2e-130 470.3 344 71.2
Rhsim08G0085100 Rhododendron simsii HOM05D005540 ORTHO05D006932 8.3e-129 464.2 499 53.5
Duzib133G1255 Durio zibethinus HOM05D005540 ORTHO05D006932 9.2e-128 460.7 315 75.6
SEGI_01535 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 9.2e-128 460.7 317 74.4
FAN23G2620 Fragaria x ananassa HOM05D005540 ORTHO05D006932 6.0e-127 458.0 321 74.5
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 3.0e-126 455.7 311 74.9
EL10Ac2g04488 Beta vulgaris HOM05D005540 ORTHO05D006932 5.1e-126 454.9 317 74.1
MD12G1075700 Malus domestica HOM05D005540 ORTHO05D006932 8.6e-126 454.1 317 72.6
arahy.Tifrunner.gnm1.ann1.32A9M8 Arachis hypogaea HOM05D005540 ORTHO05D006932 7.3e-125 451.1 289 78.2
HPP92_024102 Vanilla planifolia HOM05D005540 ORTHO05D006932 2.1e-124 449.5 359 66.0
Atru.BG.179.p Acer truncatum HOM05D005540 ORTHO05D006932 8.1e-124 447.6 315 76.2
Dinv19006 Davidia involucrata HOM05D005540 ORTHO05D006932 3.1e-123 445.7 275 81.5
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 4.4e-122 441.8 325 71.4
Peaxi162Scf00803g00528 Petunia axillaris HOM05D005540 ORTHO05D006932 3.2e-120 435.6 321 71.3
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 5.4e-120 434.9 317 70.3
PSO478G5258 Papaver somniferum HOM05D005540 ORTHO05D006932 3.5e-119 432.2 269 79.6
QL11p004195 Quercus lobata HOM05D005540 ORTHO05D006932 4.3e-117 425.2 428 56.3
Pp3c7_20600 Physcomitrium patens HOM05D005540 ORTHO05D006932 9.0e-115 417.5 318 67.0
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 1.6e-111 406.8 262 76.0
SGA_v2.0_scaffold49G18144 Striga asiatica HOM05D005540 ORTHO05D006932 3.0e-110 402.5 254 77.6
Pp3c11_8570 Physcomitrium patens HOM05D005540 ORTHO05D006932 2.5e-109 399.4 318 63.8
Ah.10g037980 Amaranthus hybridus HOM05D005540 ORTHO05D006932 4.3e-109 398.7 315 67.3
Mapoly0043s0025 Marchantia polymorpha HOM05D005540 ORTHO05D006932 5.6e-109 398.3 317 64.0
Lsat_1_v5_gn_0_4201 Lactuca sativa HOM05D005540 ORTHO05D006932 1.3e-108 397.1 274 75.5
Sc14g0004860 Simmondsia chinensis HOM05D005540 ORTHO05D006932 1.3e-108 397.1 239 81.2
FvH4_1g24900 Fragaria vesca HOM05D005540 ORTHO05D006932 1.6e-108 396.7 237 84.4
Hma1.2p1_0283F.1_g113550 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 3.4e-106 389.0 309 67.6
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 3.0e-102 375.9 300 62.7
AagrBONN_evm.TU.Sc2ySwM_344.3276 Anthoceros agrestis HOM05D005540 ORTHO05D006932 5.3e-99 365.2 272 67.3
SalBow3G0445 Salvia bowleyana HOM05D005540 ORTHO05D006932 1.2e-98 364.0 252 74.2
MBI16_g05922_MAGBIO Magnolia biondii HOM05D005540 ORTHO05D006932 2.9e-97 359.4 275 69.1
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 4.6e-95 352.1 238 73.9
DCAR_025877 Daucus carota HOM05D005540 ORTHO05D006932 6.7e-94 348.2 219 77.2
Nn4g24119 Nelumbo nucifera HOM05D005540 ORTHO05D006932 3.4e-90 335.9 319 59.2
HPP92_024131 Vanilla planifolia HOM05D005540 ORTHO05D006932 3.8e-89 332.4 217 77.0
AUR62023244 Chenopodium quinoa HOM05D005540 ORTHO05D006932 3.0e-86 322.8 273 63.7
MCO05G093 Micromonas commoda HOM05D005540 ORTHO05D006932 1.3e-84 317.4 309 54.0
Hund16203 Selenicereus undatus HOM05D005540 ORTHO05D006932 1.0e-73 281.2 184 75.5
SGA_v2.0_scaffold6G03270 Striga asiatica HOM05D005540 ORTHO05D006932 5.0e-73 278.9 177 76.8
Oeu030810.1 Olea europaea HOM05D005540 ORTHO05D006932 1.4e-67 260.8 157 82.2
Cre03.g173800 Chlamydomonas reinhardtii HOM05D005540 ORTHO05D006932 3.1e-67 259.6 332 45.8
Haze_14219 Corylus avellana HOM05D005540 ORTHO05D006932 5.0e-65 252.3 205 67.8
FAN26G0473 Fragaria x ananassa HOM05D005540 ORTHO05D006932 5.0e-65 252.3 488 36.5
Migut.H00263 Erythranthe guttata HOM05D005540 ORTHO05D006932 1.8e-62 243.8 158 75.9
CBR_g12736 Chara braunii HOM05D005540 ORTHO05D006932 2.0e-61 240.4 163 73.0
Cpa.g.sc116.24 Carica papaya HOM05D005540 ORTHO05D006932 5.5e-56 222.2 143 78.3
Cpa.g.sc116.26 Carica papaya HOM05D005540 ORTHO05D006932 1.0e-54 218.0 130 83.8
Nn3g18203 Nelumbo nucifera HOM05D005540 ORTHO05D006932 9.8e-53 211.5 130 82.3
SHI09520 Sapria himalayana HOM05D005540 ORTHO05D006932 5.5e-48 195.7 113 81.4
Hund16202 Selenicereus undatus HOM05D005540 ORTHO05D006932 4.4e-45 186.0 228 49.1
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 1.5e-40 171.0 278 35.6
Nn3g18202 Nelumbo nucifera HOM05D005540 ORTHO05D006932 8.0e-39 165.2 99 81.8
Haze_26639 Corylus avellana HOM05D005540 ORTHO05D006932 1.0e-30 138.3 297 31.6
MELO3C031731.2 Cucumis melo HOM05D005540 ORTHO05D006932 1.4e-30 137.9 71 91.5
MELO3C020384.2 Cucumis melo HOM05D005540 ORTHO05D006932 4.4e-29 132.9 71 87.3
Atru.chr4.2426 Acer truncatum HOM05D005540 ORTHO05D006932 1.7e-25 120.9 76 80.3
Cfa022314 Carpinus fangiana HOM05D005540 ORTHO05D006932 3.9e-25 119.8 231 31.2
AUR62023196 Chenopodium quinoa HOM05D005540 ORTHO05D006932 1.5e-24 117.9 60 93.3
FAN26G3341 Fragaria x ananassa HOM05D005540 ORTHO05D006932 4.3e-24 116.3 60 95.0
SalBow3G4194 Salvia bowleyana HOM05D005540 ORTHO05D006932 7.3e-24 115.5 60 91.7
Hma1.2p1_0179F.1_g079120 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 1.8e-22 110.9 61 88.5
SHI09525 Sapria himalayana HOM05D005540 ORTHO05D006932 1.2e-18 98.2 59 84.7
SEGI_04261 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 3.7e-12 76.6 60 65.0
Hma1.2p1_0179F.1_g079130 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 8.4e-12 75.5 36 91.7
arahy.Tifrunner.gnm1.ann1.XYVL4V Arachis hypogaea HOM05D005540 ORTHO05D023714 4.1e-11 73.2 43 76.7
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 5.6e-08 62.8 129 31.0
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 4.7e-07 59.7 102 33.3
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 4.7e-07 59.7 102 33.3
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 6.2e-07 59.3 109 33.0
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 8.1e-07 58.9 90 35.6
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 8.1e-07 58.9 102 32.4
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 1.4e-06 58.2 102 34.3
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 1.4e-06 58.2 102 34.3
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 1.4e-06 58.2 102 33.3
SHI09501 Sapria himalayana HOM05D005540 ORTHO05D006932 1.4e-06 58.2 81 44.4
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 1.8e-06 57.8 102 32.4
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 1.8e-06 57.8 102 32.4
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 3.1e-06 57.0 102 33.3
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 3.1e-06 57.0 102 33.3
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 3.1e-06 57.0 102 31.4
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 4.0e-06 56.6 102 32.4
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 4.0e-06 56.6 102 31.4
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 4.0e-06 56.6 102 31.4
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 5.2e-06 56.2 110 34.5
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 5.2e-06 56.2 90 33.3
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 6.8e-06 55.8 109 32.1
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 6.8e-06 55.8 109 30.3
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 6.8e-06 55.8 102 32.4
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 6.8e-06 55.8 102 32.4
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 8.9e-06 55.5 102 31.4
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 8.9e-06 55.5 102 33.3
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 8.9e-06 55.5 102 32.4
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 8.9e-06 55.5 102 32.4


User provided reference genes

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