Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 0.0e+00 2109.7 1054 100.0
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 0.0e+00 1799.6 1054 86.0
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 0.0e+00 1728.4 1054 83.2
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 0.0e+00 1586.2 1056 77.1
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 0.0e+00 1370.1 1056 68.8
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 1.0e-186 658.3 1093 40.2
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 1.3e-183 647.9 1124 39.5
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 7.7e-171 605.5 1119 38.3
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 2.5e-169 600.5 1108 38.0
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 5.1e-167 592.8 1101 38.1
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 2.2e-165 587.4 1077 37.3
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 3.7e-165 586.6 1118 37.6
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 1.8e-164 584.3 1122 36.7
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 3.1e-164 583.6 1065 39.1
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 8.0e-160 568.9 1113 37.7
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 6.3e-157 559.3 1118 36.5
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 2.4e-156 557.4 1103 37.8
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 3.1e-156 557.0 1123 36.8
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.0e-154 552.0 1174 35.6
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 5.5e-153 546.2 1086 36.8
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.2e-152 545.0 1153 35.8
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.3e-151 540.8 1105 36.4
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.2e-147 528.5 1087 35.3
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 1.0e-146 525.4 1115 35.2
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 5.0e-146 523.1 1088 35.1
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 2.0e-142 511.1 1106 35.4
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 2.8e-141 507.3 1038 35.5
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.8e-140 504.6 1103 34.9
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 1.3e-133 481.9 1121 34.7
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 1.4e-132 478.4 1095 34.7
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 7.0e-132 476.1 1120 33.4
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 9.2e-132 475.7 1051 34.7
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 1.3e-130 471.9 1082 34.1
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 8.6e-130 469.2 1098 33.0
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 1.1e-129 468.8 1105 33.5
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 2.2e-125 454.5 1109 32.6
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 6.4e-125 453.0 1079 33.1
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 4.1e-124 450.3 1106 33.5
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.2e-123 448.7 1109 33.1
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 1.2e-123 448.7 1114 33.0
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 1.9e-121 441.4 1114 32.7
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.2e-120 438.7 1175 31.4
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 3.6e-120 437.2 1123 31.9
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 5.8e-118 429.9 1060 32.3
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 7.5e-118 429.5 1084 33.2
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 2.2e-117 427.9 1083 31.7
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 2.1e-115 421.4 1124 32.3
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 2.7e-115 421.0 1068 34.4
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.0e-114 419.1 1167 31.8
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 5.6e-113 413.3 1068 34.0
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 2.1e-112 411.4 1068 33.9
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.8e-111 408.3 1058 33.0
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 4.0e-111 407.1 1077 30.9
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 4.4e-110 403.7 1075 32.1
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 1.3e-109 402.1 1091 32.4
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 1.4e-108 398.7 1097 31.9
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 3.2e-108 397.5 1080 31.0
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 3.2e-108 397.5 1088 31.6
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 7.8e-107 392.9 878 34.2
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.0e-106 391.0 1068 31.5
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 1.1e-105 389.0 1080 31.2
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 4.3e-105 387.1 1098 30.1
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.6e-104 385.2 1158 30.0
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 5.2e-103 380.2 1087 31.1
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 5.2e-103 380.2 1109 30.0
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 4.9e-101 373.6 1122 29.9
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 9.2e-100 369.4 1185 29.0
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 1.6e-99 368.6 1087 29.9
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 1.3e-98 365.5 1105 29.9
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 3.0e-98 364.4 834 35.0
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 4.3e-97 360.5 576 41.1
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 2.1e-96 358.2 1070 30.3
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 9.0e-95 352.8 1104 30.9
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.7e-91 341.3 1065 29.7
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 2.7e-91 341.3 1063 30.7
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 2.6e-86 324.7 1056 29.5
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 3.8e-85 320.9 1085 30.3
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 2.1e-83 315.1 1062 29.6
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 2.1e-80 305.1 1008 30.2
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 1.1e-79 302.8 752 32.7
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 6.9e-79 300.1 1052 29.5
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 9.0e-79 299.7 1063 27.6
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 3.8e-77 294.3 842 31.4
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 1.2e-75 289.3 1037 29.8
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 2.7e-75 288.1 1037 29.9
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 2.3e-74 285.0 1061 29.1
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 8.7e-74 283.1 765 32.8
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 8.7e-74 283.1 765 32.8
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 1.9e-73 282.0 765 33.1
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 4.5e-70 270.8 412 42.2
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 1.1e-63 249.6 711 30.4
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 8.5e-61 240.0 704 31.2
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 1.7e-56 225.7 818 28.6
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 2.6e-54 218.4 955 25.8
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 2.7e-51 208.4 1140 24.9
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 4.4e-49 201.1 350 37.7
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 3.5e-46 191.4 784 28.4
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.7e-45 189.1 333 36.6
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 8.5e-45 186.8 251 45.4
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.5e-44 186.0 538 31.0
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 4.1e-39 167.9 724 26.1
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 7.0e-39 167.2 679 26.8
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.9e-36 159.1 774 27.1
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 2.5e-36 158.7 308 33.1
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 3.2e-36 158.3 757 26.2
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.6e-35 156.0 372 33.3
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.0e-34 153.3 511 29.5
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 5.2e-34 151.0 776 27.6
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 8.8e-34 150.2 780 26.7
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.6e-33 148.7 184 45.1
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 3.4e-33 148.3 1021 22.9
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 3.4e-33 148.3 780 25.6
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 2.4e-31 142.1 1062 23.9
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 1.0e-29 136.7 151 48.3
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 1.3e-29 136.3 331 31.7
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 1.7e-29 136.0 217 41.0
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 5.5e-28 131.0 143 49.7
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 1.2e-27 129.8 158 42.4
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 2.7e-27 128.6 129 48.8
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 6.1e-27 127.5 529 27.4
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 1.0e-26 126.7 157 43.9
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 1.2e-25 123.2 336 28.6
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 2.6e-25 122.1 1024 21.6
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 4.4e-25 121.3 220 37.7
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 5.7e-25 120.9 154 41.6
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 3.7e-24 118.2 125 47.2
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 5.4e-23 114.4 135 46.7
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 7.7e-22 110.5 161 39.8
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 4.2e-20 104.8 127 42.5
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 5.5e-20 104.4 442 26.2
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 7.2e-20 104.0 745 24.4
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 1.2e-19 103.2 290 28.3
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.0e-18 100.1 311 29.6
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.4e-18 99.8 331 29.3
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 2.0e-17 95.9 437 24.0
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 5.7e-17 94.4 102 48.0
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 2.2e-16 92.4 79 58.2
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 2.0e-14 85.9 403 25.1
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 3.1e-10 72.0 104 40.4
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 1.3e-08 66.6 110 37.3
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 2.2e-08 65.9 94 37.2
THA.LOC104815984 Tarenaya hassleriana HOM05D005259 ORTHO05D006402 4.9e-08 64.7 229 27.1
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 8.3e-08 63.9 64 45.3
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 1.9e-07 62.8 94 36.2


User provided reference genes

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