Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 0.0e+00 1359.7 942 100.0
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 0.0e+00 1248.4 943 93.8
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 0.0e+00 1246.1 943 94.1
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 0.0e+00 1164.1 943 89.4
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 3.2e-293 1011.9 932 80.4
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 1.0e-291 1006.9 938 79.6
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 3.9e-291 1005.0 935 79.7
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 6.6e-291 1004.2 958 75.5
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 1.1e-290 1003.4 933 80.2
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 3.6e-289 998.4 934 79.8
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 3.6e-289 998.4 932 79.7
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 1.8e-288 996.1 944 78.8
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 2.0e-287 992.6 934 78.3
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 5.8e-287 991.1 932 79.5
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 1.7e-286 989.6 946 78.4
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 5.4e-285 984.6 940 76.7
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 1.6e-284 983.0 936 79.3
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 1.6e-284 983.0 945 77.6
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 2.3e-283 979.2 982 62.6
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 1.1e-282 976.9 939 77.7
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 1.5e-282 976.5 936 78.1
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 3.3e-282 975.3 926 79.4
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 4.8e-281 971.5 937 77.2
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 2.6e-279 965.7 939 66.6
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 3.4e-279 965.3 1107 68.8
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 2.2e-278 962.6 936 77.7
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 2.1e-276 956.1 941 76.3
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 7.9e-276 954.1 949 74.6
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 1.7e-275 953.0 945 76.9
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 2.8e-273 945.7 949 76.4
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 1.5e-271 939.9 936 76.0
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 1.5e-271 939.9 938 66.6
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 5.8e-271 937.9 950 75.9
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 3.8e-270 935.3 955 75.9
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 3.8e-270 935.3 932 74.6
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 3.5e-268 928.7 947 75.2
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 4.6e-268 928.3 950 75.6
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 6.0e-268 927.9 945 72.8
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 2.3e-267 926.0 950 75.1
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 3.3e-266 922.2 951 74.8
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 9.6e-266 920.6 957 74.6
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 2.4e-264 916.0 935 75.3
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 4.0e-264 915.2 950 75.3
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 7.6e-263 911.0 949 74.3
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 2.2e-262 909.4 927 74.8
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 2.9e-262 909.1 931 74.2
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 3.8e-262 908.7 943 74.3
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 1.9e-261 906.4 990 72.6
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 1.6e-260 903.3 933 75.7
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 6.0e-260 901.4 952 64.9
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 3.0e-259 899.0 928 75.1
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 6.7e-259 897.9 939 74.1
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 3.3e-258 895.6 939 73.9
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 9.6e-258 894.0 934 74.4
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 1.6e-257 893.3 949 74.1
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 6.3e-257 891.3 948 73.9
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 6.3e-257 891.3 957 73.0
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 2.4e-256 889.4 949 73.9
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 9.0e-256 887.5 928 74.5
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 2.0e-255 886.3 949 74.0
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 4.5e-255 885.2 936 72.3
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 4.5e-255 885.2 949 73.7
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 5.0e-254 881.7 928 74.2
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 1.1e-253 880.6 934 73.6
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 3.2e-253 879.0 933 70.1
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 4.2e-253 878.6 931 72.6
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 6.7e-251 871.3 945 64.9
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 8.7e-251 870.9 944 72.5
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 4.3e-250 868.6 950 68.2
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 1.6e-249 866.7 922 73.1
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 2.8e-249 865.9 935 69.8
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 1.4e-248 863.6 943 70.9
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 1.4e-248 863.6 959 60.4
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 6.9e-248 861.3 941 65.5
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 1.2e-247 860.5 927 70.8
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 7.7e-247 857.8 940 70.0
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 1.1e-245 854.0 938 69.6
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 5.5e-245 851.7 950 72.9
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 9.4e-245 850.9 729 76.8
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 2.1e-244 849.7 927 70.7
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 2.2e-241 839.7 969 49.7
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 1.5e-239 833.6 950 68.5
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 5.9e-239 831.6 954 68.4
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 2.7e-236 822.8 935 71.0
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 3.0e-235 819.3 927 70.2
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 8.8e-235 817.8 927 70.1
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 8.8e-235 817.8 943 71.3
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 7.4e-234 814.7 927 70.0
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 1.4e-232 810.4 927 70.1
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 3.1e-232 809.3 927 70.1
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 1.4e-227 793.9 947 70.2
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 2.6e-226 789.6 953 66.5
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 7.0e-224 781.6 884 70.9
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 3.8e-222 775.8 948 69.1
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 1.9e-221 773.5 946 68.8
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 2.5e-221 773.1 818 76.7
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 3.2e-221 772.7 943 66.6
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 1.2e-212 744.2 862 72.3
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 4.7e-212 742.3 1012 60.1
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 1.0e-211 741.1 942 63.6
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 1.0e-206 724.5 937 65.8
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 4.4e-194 682.6 918 62.5
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 3.6e-180 636.3 937 54.0
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.8e-179 634.0 867 64.0
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 4.1e-176 622.9 703 65.6
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 2.7e-167 593.6 944 57.4
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 1.1e-165 588.2 947 57.4
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 1.2e-162 578.2 956 56.2
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 1.2e-162 578.2 956 56.2
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 5.6e-157 559.3 979 57.7
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 5.8e-154 549.3 952 55.7
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 1.9e-128 464.5 652 45.6
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 6.3e-116 422.9 589 61.3
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 2.4e-107 394.4 589 42.4
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 2.2e-100 371.3 951 48.1
Lalb_Chr20g0112451 Lupinus albus HOM05D005316 ORTHO05D006495 1.4e-99 368.6 292 66.1
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 4.2e-96 357.1 954 42.0
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 2.3e-70 271.6 722 42.5
Gohir.A13G089800 Gossypium hirsutum HOM05D005316 ORTHO05D006495 1.1e-54 219.5 183 61.7
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 4.9e-44 184.1 181 53.0
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 3.9e-41 174.5 127 63.0
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 3.3e-40 171.4 123 67.5
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 2.0e-37 162.2 123 58.5
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 3.4e-37 161.4 126 65.1
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 6.4e-36 157.1 188 47.3
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.8e-30 139.0 126 55.6
Lj3C1008T12 Lonicera japonica HOM05D005316 ORTHO05D006495 5.5e-27 127.5 84 73.8
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 1.3e-25 122.9 137 43.1
Lalb_Chr20g0112421 Lupinus albus HOM05D005316 ORTHO05D006495 2.3e-25 122.1 77 80.5
SHI18789 Sapria himalayana HOM05D005316 ORTHO05D006495 3.1e-22 111.7 79 69.6
SEGI_05684 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 2.7e-18 98.6 82 59.8
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 3.6e-18 98.2 80 57.5
Psat5g092920 Pisum sativum HOM05D000083 ORTHO05D001244 1.0e-17 96.7 86 60.5
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 1.4e-17 96.3 69 69.6
Sc24g0000540 Simmondsia chinensis HOM05D005316 ORTHO05D006495 7.4e-16 90.5 88 43.2
PGSC0003DMG400013159 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.1e-14 86.7 69 68.1
PGSC0003DMG400036928 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.5e-13 82.8 103 53.4
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 6.1e-10 70.9 52 65.4
Cfa003664 Carpinus fangiana HOM05D005316 ORTHO05D006495 5.7e-08 64.3 56 57.1
Lalb_Chr03g0036201 Lupinus albus HOM05D000836 ORTHO05D000709 2.2e-07 62.4 143 28.0
CANSAT78G1202 Cannabis sativa HOM05D000836 ORTHO05D000709 6.3e-07 60.8 136 27.2
Psat3g191240 Pisum sativum HOM05D005316 ORTHO05D006495 6.3e-07 60.8 60 56.7
TWI59G1428 Tripterygium wilfordii HOM05D005813 ORTHO05D007310 6.3e-07 60.8 192 26.6
Eucgr.C02462 Eucalyptus grandis HOM05D000526 ORTHO05D000956 1.4e-06 59.7 220 25.9
MD02G1204700 Malus domestica HOM05D005813 ORTHO05D007310 1.4e-06 59.7 179 27.4
TPR.G29407 Trifolium pratense HOM05D005813 ORTHO05D007310 1.4e-06 59.7 178 28.1
Eucgr.C02321 Eucalyptus grandis HOM05D000526 ORTHO05D000956 1.8e-06 59.3 220 25.9
Sed0000820 Sechium edule HOM05D000836 ORTHO05D000709 1.8e-06 59.3 159 24.5
Actinidia12685 Actinidia chinensis HOM05D005813 ORTHO05D007310 2.4e-06 58.9 178 26.4
Eucgr.C02311 Eucalyptus grandis HOM05D000526 ORTHO05D000956 2.4e-06 58.9 220 25.5
CiPaw.01G122500 Carya illinoinensis HOM05D000836 ORTHO05D000709 3.1e-06 58.5 146 26.0
CiPaw.01G262200 Carya illinoinensis HOM05D005813 ORTHO05D007310 3.1e-06 58.5 190 26.3
Manes.05G045300 Manihot esculenta HOM05D005813 ORTHO05D007310 3.1e-06 58.5 178 27.0
Sabra02G0115400 Salix brachista HOM05D005813 ORTHO05D007310 3.1e-06 58.5 178 26.4
Sabra02G0117100 Salix brachista HOM05D005813 ORTHO05D007310 3.1e-06 58.5 178 26.4
SEGI_01490 Sequoiadendron giganteum HOM05D000526 ORTHO05D000956 3.1e-06 58.5 166 25.3
vmacro21010 Vaccinium macrocarpon HOM05D005813 ORTHO05D007310 3.1e-06 58.5 175 25.7
Zm00001eb258660 Zea mays HOM05D000836 ORTHO05D000709 3.1e-06 58.5 117 29.1
Ah.05g174210 Amaranthus hybridus HOM05D005813 ORTHO05D007310 4.1e-06 58.2 179 26.8
EL10Ac5g11429 Beta vulgaris HOM05D003769 ORTHO05D004521 4.1e-06 58.2 157 24.2
BcaB01g03760 Brassica carinata HOM05D000526 ORTHO05D000956 4.1e-06 58.2 179 24.6
A04p25240 Brassica napus HOM05D000836 ORTHO05D000709 4.1e-06 58.2 170 27.6
BraA04t18027Z Brassica rapa HOM05D000836 ORTHO05D000709 4.1e-06 58.2 170 27.6
ClCG05G002290 Citrullus lanatus HOM05D005813 ORTHO05D007310 4.1e-06 58.2 178 24.7
Eucgr.C02315 Eucalyptus grandis HOM05D000526 ORTHO05D000956 4.1e-06 58.2 188 26.6
Medtr5g008010 Medicago truncatula HOM05D000526 ORTHO05D000956 4.1e-06 58.2 202 25.7
TWI60G1482 Tripterygium wilfordii HOM05D000526 ORTHO05D000956 5.3e-06 57.8 217 24.9
Lalb_Chr01g0010231 Lupinus albus HOM05D000836 ORTHO05D000709 7.0e-06 57.4 136 26.5
QL07p027080 Quercus lobata HOM05D000526 ORTHO05D000956 7.0e-06 57.4 200 25.0
QL09p025842 Quercus lobata HOM05D000526 ORTHO05D000956 7.0e-06 57.4 200 25.5
QL10p018959 Quercus lobata HOM05D000526 ORTHO05D000956 7.0e-06 57.4 200 26.5
Sed0000354 Sechium edule HOM05D005813 ORTHO05D007310 7.0e-06 57.4 178 25.3
HPP92_015469 Vanilla planifolia HOM05D000526 ORTHO05D000956 7.0e-06 57.4 182 25.3
C04p18600 Brassica napus HOM05D000526 ORTHO05D000956 9.1e-06 57.0 212 24.5
C04p18860 Brassica napus HOM05D000526 ORTHO05D000956 9.1e-06 57.0 179 25.1
Glyma.18G220700 Glycine max HOM05D005813 ORTHO05D007310 9.1e-06 57.0 178 26.4
SalBow5G4545 Salvia bowleyana HOM05D005813 ORTHO05D007310 9.1e-06 57.0 175 26.9


User provided reference genes

Program Settings