Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 0.0e+00 1161.4 623 100.0
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 1.2e-301 1039.3 629 87.0
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 4.2e-294 1014.2 628 86.6
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 8.6e-255 883.6 588 78.6
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 2.5e-161 573.2 599 54.8
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 1.8e-159 567.0 591 54.3
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 2.6e-158 563.1 577 55.6
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.1e-156 557.8 553 54.6
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 1.0e-154 551.2 559 56.2
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 1.1e-153 547.7 554 51.6
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 1.2e-152 544.3 539 56.2
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 7.5e-150 535.0 602 52.2
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 8.3e-149 531.6 539 52.3
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 8.3e-149 531.6 581 51.1
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 2.4e-148 530.0 559 54.9
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 2.7e-147 526.6 578 48.4
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 7.8e-147 525.0 569 51.5
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 7.8e-147 525.0 561 52.6
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 8.6e-146 521.5 621 51.4
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 5.6e-145 518.8 614 48.5
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 2.0e-142 510.4 546 49.6
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 4.4e-142 509.2 546 49.6
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 5.8e-142 508.8 546 49.8
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 9.8e-142 508.1 528 51.1
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 3.7e-141 506.1 546 49.5
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 4.9e-141 505.8 539 51.0
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 6.4e-141 505.4 571 51.7
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 2.4e-140 503.4 608 47.5
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 7.1e-140 501.9 535 52.7
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 7.1e-140 501.9 595 48.6
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 1.6e-139 500.7 569 50.6
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 3.5e-139 499.6 548 50.5
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.7e-138 497.3 571 46.6
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 5.1e-138 495.7 535 51.2
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 1.1e-137 494.6 559 50.1
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 3.1e-135 486.5 542 47.0
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 2.2e-133 480.3 553 50.5
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 4.9e-133 479.2 608 47.0
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 1.1e-132 478.0 535 47.5
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 3.2e-132 476.5 547 48.6
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 7.1e-132 475.3 569 48.0
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 2.7e-131 473.4 598 45.8
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 7.8e-131 471.9 600 45.0
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 1.0e-130 471.5 539 49.0
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 1.1e-129 468.0 526 48.1
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 8.1e-128 461.8 568 44.7
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 8.9e-127 458.4 612 44.4
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 3.4e-126 456.4 587 46.0
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 1.3e-125 454.5 584 45.7
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 1.7e-125 454.1 548 47.3
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 1.6e-123 447.6 523 45.5
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 1.3e-122 444.5 550 46.7
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 1.7e-122 444.1 544 44.7
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 3.0e-122 443.4 570 44.9
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 3.0e-122 443.4 530 46.8
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 3.9e-122 443.0 518 46.7
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.9e-121 440.7 543 44.2
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 5.6e-121 439.1 534 47.6
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 1.1e-119 434.9 559 46.3
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 5.8e-118 429.1 593 45.2
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.3e-117 427.9 551 44.8
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 6.4e-117 425.6 557 44.7
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 2.4e-116 423.7 530 45.5
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 4.2e-116 422.9 532 44.9
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 9.3e-116 421.8 566 43.1
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 4.6e-115 419.5 593 44.5
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 1.6e-112 411.0 562 44.3
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 8.1e-112 408.7 554 44.2
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 3.2e-108 396.7 477 49.5
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 3.5e-107 393.3 585 40.0
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 1.0e-106 391.7 398 55.8
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 6.7e-106 389.0 552 43.3
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 1.6e-104 384.4 542 39.9
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 3.1e-103 380.2 552 40.6
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 1.5e-102 377.9 442 51.6
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 1.1e-100 371.7 577 43.2
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 2.1e-99 367.5 586 41.1
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 1.8e-98 364.4 415 47.5
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 4.8e-96 356.3 490 41.0
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 8.2e-96 355.5 350 57.4
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 3.1e-95 353.6 500 41.6
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 4.1e-95 353.2 534 38.8
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 6.5e-93 345.9 543 40.7
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 3.9e-90 336.7 404 46.0
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 9.7e-89 332.0 465 44.9
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 8.2e-88 328.9 349 48.7
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 1.5e-86 324.7 537 39.5
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 1.7e-85 321.2 546 37.9
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 7.9e-83 312.4 561 35.3
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 2.8e-80 303.9 511 35.4
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 5.5e-76 289.7 570 32.1
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 2.7e-75 287.3 518 33.8
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 7.9e-75 285.8 342 44.2
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 3.0e-74 283.9 469 39.4
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 1.5e-73 281.6 510 33.7
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 3.0e-66 257.3 354 40.7
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 3.0e-66 257.3 252 54.0
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 8.2e-64 249.2 617 29.5
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 8.5e-61 239.2 355 38.9
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 1.1e-60 238.8 319 42.0
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 1.1e-55 222.2 313 40.6
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 1.4e-55 221.9 675 27.1
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 5.4e-55 219.9 262 43.9
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 8.6e-53 212.6 240 47.5
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 6.1e-51 206.5 297 45.5
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 1.8e-39 168.3 190 55.3
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 1.7e-37 161.8 159 56.0
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 8.6e-37 159.5 148 54.1
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 4.7e-35 153.7 733 24.6
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 6.2e-35 153.3 122 61.5
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 2.9e-32 144.4 117 56.4
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 1.6e-30 138.7 111 55.9
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 2.3e-29 134.8 116 52.6
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 2.3e-29 134.8 104 57.7
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 1.5e-28 132.1 109 54.1
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 5.6e-28 130.2 153 49.0
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 1.2e-27 129.0 127 55.9
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 3.6e-27 127.5 104 53.8
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.8e-26 125.2 115 51.3
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 4.0e-26 124.0 110 55.5
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 2.6e-25 121.3 158 39.9
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 3.7e-24 117.5 152 42.8
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 2.4e-23 114.8 467 24.2
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 2.1e-22 111.7 100 51.0
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 2.3e-21 108.2 103 46.6
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 1.5e-20 105.5 80 56.2
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 1.6e-19 102.1 171 40.9
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.8e-19 101.3 148 37.8
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 6.2e-19 100.1 90 48.9
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 8.9e-18 96.3 85 43.5
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 9.9e-17 92.8 125 40.8
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 4.9e-16 90.5 154 33.8
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 1.1e-15 89.4 83 50.6
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 7.1e-15 86.7 69 53.6
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 3.5e-14 84.3 67 52.2
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 3.5e-14 84.3 109 44.0
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 2.5e-12 78.2 135 31.9
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 3.3e-12 77.8 87 43.7
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.1e-11 75.1 71 42.3
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.6e-11 74.3 105 37.1
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.6e-11 74.3 105 37.1
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 4.7e-11 73.9 75 41.3
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 1.5e-09 68.9 63 52.4
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.4e-09 67.8 71 39.4
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 9.9e-09 66.2 47 66.0
Glyma.07G162100 Glycine max HOM05D003568 ORTHO05D004104 2.2e-08 65.1 57 52.6
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 2.9e-08 64.7 53 58.5
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 4.9e-08 63.9 45 57.8
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 8.4e-08 63.2 72 38.9
SEGI_17091 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 8.4e-08 63.2 191 27.7
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 4.2e-07 60.8 38 57.9
Glyma.19G185100 Glycine max HOM05D004644 ORTHO05D005700 1.2e-06 59.3 54 50.0
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.6e-06 58.9 106 27.4


User provided reference genes

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