Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 0.0e+00 1144.8 580 100.0
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 1.5e-309 1065.4 597 91.8
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 2.6e-306 1054.7 602 90.2
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 1.9e-296 1021.9 595 88.4
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 4.4e-237 824.7 602 71.3
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 5.8e-237 824.3 602 69.4
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 7.3e-232 807.4 612 68.1
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 4.7e-231 804.7 611 68.6
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 3.8e-228 795.0 595 68.4
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.7e-225 786.2 597 67.5
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 2.8e-223 778.9 603 65.7
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 6.2e-223 777.7 606 67.2
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 1.7e-220 769.6 591 68.4
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 2.2e-220 769.2 603 65.0
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 6.0e-218 761.1 590 66.8
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 1.3e-217 760.0 604 64.6
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 7.3e-216 754.2 600 66.5
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 9.0e-214 747.3 603 64.0
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 1.3e-209 733.4 603 62.2
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.0e-209 732.3 713 56.0
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 5.1e-209 731.5 603 63.2
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.4e-206 723.4 590 64.6
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 2.9e-204 715.7 604 62.6
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 7.1e-203 711.1 583 62.8
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 1.2e-202 710.3 600 62.8
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 1.6e-202 709.9 602 61.5
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 4.6e-202 708.4 604 60.3
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 6.0e-202 708.0 594 62.3
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 1.0e-201 707.2 599 60.8
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 1.8e-201 706.4 600 62.5
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 6.7e-201 704.5 602 61.3
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 2.0e-197 693.0 602 61.6
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 1.0e-196 690.6 624 58.5
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 4.9e-196 688.3 594 61.1
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 9.3e-195 684.1 525 66.1
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 1.6e-194 683.3 592 60.3
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 2.1e-194 682.9 592 61.1
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 2.1e-194 682.9 595 60.0
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 3.5e-194 682.2 596 60.6
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 6.7e-193 677.9 623 60.5
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 1.9e-192 676.4 596 60.1
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 1.6e-191 673.3 564 61.7
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 2.2e-191 672.9 599 61.1
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 3.7e-191 672.2 570 62.3
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 8.2e-191 671.0 575 63.0
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 3.1e-190 669.1 599 60.9
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 2.6e-189 666.0 729 52.7
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 5.9e-189 664.8 599 59.8
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 5.0e-188 661.8 601 59.2
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 6.5e-188 661.4 604 58.4
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 6.5e-188 661.4 592 59.5
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 7.2e-187 657.9 599 58.3
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 7.2e-187 657.9 599 59.3
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 9.4e-187 657.5 589 59.6
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 2.7e-186 656.0 555 62.7
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 6.1e-186 654.8 599 58.9
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 6.7e-185 651.4 603 59.0
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 7.4e-184 647.9 591 58.7
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 1.8e-182 643.3 604 58.9
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 6.9e-182 641.3 599 58.6
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 1.7e-180 636.7 599 58.3
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 1.9e-179 633.3 592 59.0
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 2.5e-179 632.9 616 54.7
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 5.5e-179 631.7 599 56.9
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 7.2e-179 631.3 694 51.3
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 1.6e-178 630.2 600 57.0
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 3.6e-178 629.0 597 57.1
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 6.1e-178 628.2 594 58.4
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.4e-177 627.1 607 55.5
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 2.3e-177 626.3 671 53.7
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 3.9e-177 625.5 609 58.0
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 5.1e-177 625.2 605 55.9
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 8.8e-177 624.4 604 56.5
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 2.0e-176 623.2 703 51.6
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 4.4e-176 622.1 551 60.6
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 5.7e-176 621.7 593 56.2
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 2.4e-174 616.3 594 56.9
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 1.0e-172 610.9 594 55.2
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 1.1e-171 607.4 595 55.6
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 6.1e-170 601.7 588 55.6
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 1.0e-169 600.9 620 54.2
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 3.0e-169 599.4 590 55.4
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 3.0e-169 599.4 590 55.4
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 3.0e-169 599.4 590 55.4
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 2.6e-168 596.3 590 55.3
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 4.4e-168 595.5 590 55.3
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 4.4e-168 595.5 598 53.5
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 2.2e-167 593.2 582 55.0
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 9.1e-166 587.8 608 53.9
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 8.5e-164 581.3 601 53.9
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 2.1e-162 576.6 584 56.2
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 3.6e-162 575.9 551 57.2
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 4.4e-160 568.9 604 54.3
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.7e-159 567.0 597 53.9
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 5.3e-158 562.0 599 52.3
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 1.2e-157 560.8 610 53.3
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 8.0e-154 548.1 542 56.6
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 1.7e-151 540.4 582 53.6
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 1.2e-149 534.3 535 54.6
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 1.6e-146 523.9 598 50.0
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 2.8e-146 523.1 576 51.2
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 3.6e-146 522.7 479 59.3
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 6.1e-146 521.9 654 47.4
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 2.3e-140 503.4 383 67.1
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 2.0e-136 490.3 345 71.6
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 5.4e-134 482.3 490 54.3
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 5.4e-134 482.3 370 64.6
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 1.2e-133 481.1 609 48.9
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 5.8e-128 462.2 404 59.7
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.4e-126 457.6 359 65.2
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 7.6e-120 435.3 605 43.0
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 8.3e-119 431.8 442 55.2
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 2.1e-117 427.2 599 42.2
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 1.0e-116 424.9 464 50.4
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 1.7e-116 424.1 470 53.0
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 2.6e-112 410.2 605 39.8
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 3.4e-112 409.8 408 55.6
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.1e-110 404.8 367 60.8
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 1.1e-105 388.3 570 43.7
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 3.1e-105 386.7 368 57.3
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 4.4e-104 382.9 468 50.0
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.0e-100 371.7 467 49.3
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 2.8e-98 363.6 367 56.7
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 8.1e-98 362.1 440 51.4
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.1e-97 360.1 404 52.5
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 4.0e-97 359.8 531 44.3
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 4.1e-81 306.6 487 41.9
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 5.3e-81 306.2 591 35.2
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 9.0e-81 305.4 217 68.7
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.6e-80 303.9 288 58.0
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 2.3e-76 290.8 232 65.1
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 6.7e-76 289.3 225 67.6
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 5.0e-71 273.1 331 49.2
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 9.4e-70 268.9 187 71.7
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 5.1e-68 263.1 201 66.2
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 5.1e-68 263.1 205 64.4
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 1.7e-63 248.1 200 63.5
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 1.9e-62 244.6 165 73.9
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 2.5e-62 244.2 431 41.3
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 7.9e-61 239.2 280 47.1
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.3e-58 231.9 340 45.3
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.5e-56 223.4 564 32.4
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 1.3e-55 221.9 208 60.1
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 6.1e-53 213.0 247 52.2
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 5.9e-48 196.4 191 58.1
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 4.8e-42 176.8 232 45.3
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 2.5e-38 164.5 244 41.8
Actinidia03659 Actinidia chinensis HOM05D003810 ORTHO05D004416 7.2e-38 162.9 138 62.3
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 6.1e-37 159.8 194 49.5
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 1.8e-36 158.3 212 44.3
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 1.1e-30 139.0 169 49.7
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 1.1e-30 139.0 169 49.7
Oeu005536.2 Olea europaea HOM05D003810 ORTHO05D004416 1.9e-30 138.3 165 48.5
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 1.2e-29 135.6 183 45.9
TPR.G30194 Trifolium pratense HOM05D003810 ORTHO05D004416 7.5e-27 126.3 192 42.7
ClCG09G022970 Citrullus lanatus HOM05D003810 ORTHO05D004416 2.2e-26 124.8 70 90.0
SMO031G0001 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 1.4e-25 122.1 122 45.9
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 1.5e-22 112.1 76 72.4
SHI21692 Sapria himalayana HOM05D003810 ORTHO05D004416 3.3e-22 110.9 105 55.2
SalBow3G3831 Salvia bowleyana HOM05D003810 ORTHO05D004416 1.0e-20 105.9 132 46.2
TAR629G2180 Trochodendron aralioides HOM05D003810 ORTHO05D004416 4.0e-20 104.0 65 73.8
Sabra05G0051600 Salix brachista HOM05D003810 ORTHO05D004416 8.9e-20 102.8 253 37.2
SHI21696 Sapria himalayana HOM05D003810 ORTHO05D004416 8.3e-18 96.3 108 52.8
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 5.4e-17 93.6 166 41.0
CDE07G1690 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 9.2e-17 92.8 136 43.4
Hund08475 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.9e-14 85.1 58 67.2
SalBow3G0229 Salvia bowleyana HOM05D003810 ORTHO05D004416 2.8e-13 81.3 78 53.8
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 4.7e-13 80.5 168 37.5
CAN.G1077.9 Capsicum annuum HOM05D000222 ORTHO05D012343 1.8e-12 78.6 115 40.9
CAN.G1034.2 Capsicum annuum HOM05D000222 ORTHO05D011077 5.2e-12 77.0 201 31.3
MD08G1246200 Malus domestica HOM05D003810 ORTHO05D004416 8.9e-12 76.3 151 37.1
CAN.G11.19 Capsicum annuum HOM05D003810 ORTHO05D004416 2.0e-11 75.1 56 62.5
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 7.5e-11 73.2 56 62.5
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 7.5e-11 73.2 53 64.2
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 4.9e-10 70.5 56 58.9
TPR.G30768 Trifolium pratense HOM05D003810 ORTHO05D004416 6.4e-10 70.1 66 57.6
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 2.4e-09 68.2 53 62.3
Nitab4.5_0001303g0160 Nicotiana tabacum HOM05D003810 ORTHO05D004416 9.2e-09 66.2 181 32.0
Hund17711 Selenicereus undatus HOM05D003810 ORTHO05D004416 6.0e-08 63.5 50 62.0
A07p35570 Brassica napus HOM05D003810 ORTHO05D004416 1.3e-07 62.4 70 50.0
MD08G1246500 Malus domestica HOM05D003810 ORTHO05D004416 1.3e-07 62.4 42 71.4
BraA07t31145Z Brassica rapa HOM05D003810 ORTHO05D004416 1.7e-07 62.0 50 64.0
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 6.6e-07 60.1 170 32.4
SEGI_40538 Sequoiadendron giganteum HOM05D003810 ORTHO05D004416 6.6e-07 60.1 56 57.1
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 8.6e-07 59.7 76 38.2
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 1.1e-06 59.3 640 20.5
Mapoly0063s0044 Marchantia polymorpha HOM05D003810 ORTHO05D004416 7.3e-06 56.6 64 50.0


User provided reference genes

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