Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 2110.9 1052 100.0
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1993.8 1052 94.3
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1964.1 1052 93.1
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1892.1 1054 89.1
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1595.1 1053 74.2
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1586.2 1053 73.8
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1581.6 1056 73.6
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1577.8 1054 74.3
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1575.5 1053 73.1
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1569.3 1052 73.5
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1564.7 1055 73.1
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1564.7 1056 73.8
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1560.0 1053 72.4
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1553.5 1054 73.2
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1552.0 1054 72.9
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1542.3 1057 71.5
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1532.3 1054 72.1
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1529.6 1052 71.3
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1529.2 1056 72.3
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1526.9 1057 71.2
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1523.8 1053 71.6
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1521.5 1052 71.4
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1518.8 1054 71.6
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1514.6 1053 71.0
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1514.2 1054 71.2
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1512.3 1055 70.0
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1512.3 1056 70.8
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1509.6 1054 71.5
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1509.2 1061 70.3
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1499.6 1053 70.6
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1496.9 1054 70.3
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1496.5 1054 70.6
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1492.6 1054 70.4
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1491.9 1146 66.7
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1489.9 1039 71.6
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1486.9 1119 66.8
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1485.7 1055 69.5
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1482.6 1054 70.1
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1482.6 1057 69.6
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1479.9 1044 70.0
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1479.2 1073 69.2
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1478.0 1073 69.2
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1476.1 1140 66.1
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1466.4 1052 68.6
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1465.3 1061 69.0
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1462.2 1061 68.9
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1462.2 1052 70.1
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1458.0 1053 69.6
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1455.3 1055 67.9
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1454.5 1053 69.3
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1454.1 1057 67.8
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1453.7 1053 67.5
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1451.0 1057 67.6
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1449.9 1053 69.8
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1444.5 1054 67.8
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1442.9 1061 68.4
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1441.8 1054 67.0
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1440.6 959 74.7
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1440.2 1054 67.6
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1439.1 1055 68.3
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1435.2 1055 67.3
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1432.2 1053 67.8
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1431.0 1040 68.4
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1429.5 1054 66.6
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1426.8 1054 66.4
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1426.4 1050 68.3
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1426.0 1054 67.1
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1423.7 1056 67.9
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1418.7 1054 67.4
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1413.7 1054 67.2
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1412.1 1054 66.1
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1408.7 1054 67.0
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1403.3 1055 66.7
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1401.7 1131 64.1
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1395.2 1061 66.1
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1394.0 1092 63.8
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1391.3 1053 67.1
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1383.2 977 69.9
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1382.5 1063 66.3
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1380.2 1055 65.8
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1377.1 1056 64.6
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1375.9 1060 64.4
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1368.2 1261 56.4
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1366.7 1066 64.1
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1364.0 1068 64.1
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1350.1 946 71.9
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1268.1 864 73.1
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1246.1 1053 60.2
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1241.1 845 72.2
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1216.1 852 69.5
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1201.8 801 73.9
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1093.6 790 67.5
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 0.0e+00 1082.8 1079 52.5
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 3.0e-308 1062.0 958 58.5
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 3.8e-303 1045.0 1057 50.8
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 1.2e-301 1040.0 788 66.0
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 6.1e-285 984.6 1074 49.8
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 2.1e-261 906.4 778 60.2
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 5.3e-257 891.7 632 70.9
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 2.9e-247 859.4 947 50.9
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 4.7e-237 825.5 658 62.8
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 1.3e-234 817.4 518 76.3
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 1.7e-231 807.0 517 73.3
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 3.2e-209 733.0 450 75.6
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 5.4e-209 732.3 481 72.1
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 7.1e-209 731.9 450 75.3
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 6.6e-207 725.3 453 74.8
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 8.7e-207 724.9 470 71.9
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 3.4e-203 713.0 496 68.5
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.9e-202 709.9 694 53.6
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 1.9e-201 707.2 450 72.9
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 1.5e-198 697.6 452 72.1
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 3.3e-198 696.4 449 73.7
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 6.7e-191 672.2 452 70.1
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 1.1e-190 671.4 450 71.6
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 1.4e-185 654.4 471 66.7
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 3.6e-168 596.7 450 64.9
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 1.5e-166 591.3 427 68.1
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 9.7e-166 588.6 461 62.9
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 1.2e-163 581.6 450 62.4
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 2.4e-156 557.4 399 69.7
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 7.2e-153 545.8 366 71.0
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 7.4e-150 535.8 405 66.4
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 2.2e-149 534.3 366 69.7
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 7.2e-145 519.2 612 48.7
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 8.0e-136 489.2 1119 31.3
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 5.0e-122 443.4 267 78.3
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 6.6e-114 416.4 238 84.0
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 4.7e-112 410.2 286 69.2
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 9.2e-108 396.0 271 72.3
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 8.1e-104 382.9 250 74.4
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 4.9e-101 373.6 213 84.0
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 5.4e-100 370.2 266 69.9
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 5.4e-100 370.2 236 77.5
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 9.2e-100 369.4 318 60.7
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 1.8e-71 275.4 156 81.4
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 1.4e-63 249.2 209 61.2
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 1.9e-60 238.8 205 62.4
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 2.8e-56 224.9 286 43.7
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 1.1e-44 186.4 121 70.2
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 5.5e-44 184.1 161 59.0
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 7.2e-44 183.7 182 54.9
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.3e-42 178.7 155 58.1
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 6.3e-40 170.6 185 52.4
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 3.3e-33 148.3 109 65.1
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 1.7e-29 136.0 106 66.0
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 8.5e-29 133.7 137 52.6
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 2.5e-28 132.1 96 65.6
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 3.6e-27 128.3 137 51.1
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 1.0e-26 126.7 83 67.5
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 2.6e-25 122.1 85 61.2
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 2.7e-22 112.1 54 94.4
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 4.5e-22 111.3 96 55.2
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 4.2e-20 104.8 96 53.1
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 2.7e-19 102.1 106 51.9
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 1.8e-18 99.4 85 60.0
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 1.2e-17 96.7 62 74.2
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 1.7e-16 92.8 83 51.8
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 1.8e-15 89.4 58 63.8
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 4.1e-15 88.2 74 60.8
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 2.0e-14 85.9 56 66.1
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 1.5e-12 79.7 53 73.6
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 1.2e-11 76.6 77 54.5
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 1.6e-11 76.3 74 54.1
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 1.5e-09 69.7 71 54.9
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 2.6e-09 68.9 44 65.9
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 2.2e-08 65.9 41 65.9
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 1.1e-07 63.5 44 68.2
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 1.8e-07 62.8 49 63.3
AUR62036524 Chenopodium quinoa HOM05D000030 ORTHO05D000009 2.7e-06 58.9 47 57.4


User provided reference genes

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