Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 4.0e-154 548.1 293 100.0
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 3.9e-149 531.6 304 95.1
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 8.7e-149 530.4 304 94.7
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 8.5e-136 487.3 293 88.4
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 2.5e-135 485.7 273 87.5
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 9.4e-135 483.8 293 84.3
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 9.4e-135 483.8 275 88.4
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 3.6e-134 481.9 275 86.2
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 4.6e-134 481.5 305 86.6
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 6.1e-134 481.1 304 81.6
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 6.1e-134 481.1 304 81.6
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 6.1e-134 481.1 304 81.9
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 7.9e-134 480.7 274 88.3
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 1.4e-133 479.9 307 81.1
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 1.5e-132 476.5 273 87.5
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.5e-132 475.7 299 84.3
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 3.3e-132 475.3 304 83.9
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 3.3e-132 475.3 273 87.2
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 4.3e-132 474.9 304 80.6
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 5.7e-132 474.6 273 85.7
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 5.7e-132 474.6 273 86.8
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 7.4e-132 474.2 306 85.0
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 7.4e-132 474.2 304 85.9
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 9.7e-132 473.8 304 84.9
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 1.7e-131 473.0 272 86.4
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 2.2e-131 472.6 273 86.8
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 2.2e-131 472.6 304 80.3
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 2.2e-131 472.6 275 85.8
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 2.8e-131 472.2 274 86.9
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 4.8e-131 471.5 274 86.9
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 4.8e-131 471.5 307 86.0
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 6.3e-131 471.1 304 82.6
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 6.3e-131 471.1 304 85.2
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 4.1e-130 468.4 305 82.3
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 6.9e-130 467.6 273 86.1
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 6.9e-130 467.6 287 82.9
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 9.1e-130 467.2 306 84.6
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 4.5e-129 464.9 273 84.2
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 1.0e-128 463.8 273 85.3
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 1.0e-128 463.8 274 85.4
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 1.0e-128 463.8 272 85.7
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 3.8e-128 461.8 275 84.0
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 5.0e-128 461.5 307 82.1
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 6.5e-128 461.1 274 84.7
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.1e-127 460.3 300 79.0
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.4e-127 459.9 276 84.8
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 2.5e-127 459.1 275 82.9
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 4.2e-127 458.4 305 77.7
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 1.2e-126 456.8 273 84.2
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 1.6e-126 456.4 273 84.2
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 1.6e-126 456.4 273 84.2
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 6.1e-126 454.5 304 77.0
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 7.9e-126 454.1 273 83.5
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 7.9e-126 454.1 276 81.2
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 2.0e-124 449.5 267 84.3
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 2.0e-124 449.5 262 84.4
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 2.0e-124 449.5 304 75.7
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 3.3e-124 448.7 272 80.9
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 3.3e-124 448.7 273 81.0
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 3.3e-124 448.7 273 81.7
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 4.4e-124 448.4 304 76.3
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 5.7e-124 448.0 347 68.0
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 1.3e-123 446.8 273 81.0
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 2.8e-123 445.7 289 77.5
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 2.8e-123 445.7 275 81.1
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 8.2e-123 444.1 274 80.3
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 1.1e-122 443.7 275 81.8
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 1.8e-122 443.0 273 80.6
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 2.4e-122 442.6 276 79.3
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 1.2e-121 440.3 304 74.3
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 1.5e-121 439.9 288 77.8
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 4.5e-121 438.3 274 79.6
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 4.5e-121 438.3 277 79.8
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 1.7e-120 436.4 277 79.4
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 5.0e-120 434.9 273 77.3
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 8.5e-120 434.1 273 79.5
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 8.5e-120 434.1 304 76.3
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 1.1e-119 433.7 323 72.4
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 4.2e-119 431.8 277 78.3
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 7.2e-119 431.0 284 79.6
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 7.2e-119 431.0 273 78.8
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 3.6e-118 428.7 277 76.5
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 4.7e-118 428.3 274 78.1
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 4.7e-118 428.3 274 78.1
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 2.3e-117 426.0 298 74.2
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 3.9e-117 425.2 344 70.6
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 6.7e-117 424.5 273 77.7
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 6.7e-117 424.5 282 77.7
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 8.8e-117 424.1 310 71.6
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 1.5e-116 423.3 274 77.0
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 2.0e-116 422.9 275 79.3
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 3.3e-116 422.2 310 70.6
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 7.4e-116 421.0 273 78.0
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 7.4e-116 421.0 274 77.4
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 2.8e-115 419.1 284 77.1
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 6.3e-115 417.9 257 90.7
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 1.1e-114 417.2 275 77.8
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 3.5e-113 412.1 309 69.3
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 7.7e-113 411.0 273 77.3
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 7.7e-113 411.0 273 77.3
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 5.0e-112 408.3 276 73.6
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.5e-111 406.8 266 72.2
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 9.4e-111 404.1 279 75.3
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 1.2e-110 403.7 278 73.0
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 1.2e-110 403.7 309 68.3
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 3.0e-109 399.1 276 72.8
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 7.5e-108 394.4 275 70.5
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 1.1e-103 380.6 264 75.0
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 1.1e-103 380.6 233 82.4
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 1.5e-103 380.2 222 85.6
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 1.4e-101 373.6 295 69.8
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.5e-97 359.0 264 67.4
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 3.6e-94 349.0 275 66.9
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 3.6e-94 349.0 275 66.9
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 2.6e-92 342.8 198 85.9
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.3e-88 329.7 241 66.8
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 3.3e-87 325.9 240 70.4
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 2.6e-84 316.2 190 83.2
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 4.4e-84 315.5 279 58.1
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 1.4e-82 310.5 181 86.7
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 1.9e-82 310.1 283 59.0
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 7.0e-82 308.1 281 56.9
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 1.0e-80 304.3 212 74.5
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 9.5e-79 297.7 187 81.3
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 2.1e-78 296.6 268 60.4
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.6e-78 295.8 246 62.6
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 8.0e-78 294.7 197 70.1
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 5.2e-77 292.0 181 80.1
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 2.9e-75 286.2 295 54.2
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 8.6e-72 274.6 246 65.4
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 3.6e-70 269.2 256 57.4
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 3.5e-65 252.7 190 67.9
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.0e-64 251.1 147 85.7
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 6.6e-48 195.3 116 84.5
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 1.8e-40 170.6 106 77.4
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 3.0e-40 169.9 127 70.1
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.1e-37 161.4 96 80.2
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 4.0e-37 159.5 260 38.1
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 9.0e-37 158.3 92 84.8
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 1.4e-34 151.0 106 70.8
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 7.1e-34 148.7 238 42.4
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 2.1e-33 147.1 126 61.1
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 1.8e-32 144.1 122 62.3
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.5e-31 140.2 69 92.8
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 9.6e-31 138.3 268 31.7
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 1.2e-28 131.3 118 62.7
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 1.2e-28 131.3 118 62.7
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 1.5e-28 131.0 178 44.4
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 3.4e-28 129.8 110 66.4
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 5.8e-28 129.0 105 68.6
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 5.8e-28 129.0 66 92.4
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 7.6e-28 128.6 101 65.3
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 2.2e-27 127.1 110 63.6
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 2.9e-27 126.7 110 64.5
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.4e-26 124.4 259 34.0
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 3.2e-26 123.2 110 63.6
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 5.5e-26 122.5 118 60.2
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 1.6e-25 120.9 94 79.8
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 6.1e-25 119.0 251 32.3
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 9.7e-23 111.7 155 42.6
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 1.3e-22 111.3 155 41.9
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 1.8e-21 107.5 155 41.9
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 1.0e-19 101.7 83 66.3
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.2e-17 94.7 47 95.7
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 6.7e-16 89.0 91 50.5
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 2.2e-14 84.0 45 86.7
TWI34G1190 Tripterygium wilfordii HOM05D004147 ORTHO05D414039 1.0e-11 75.1 246 31.3


User provided reference genes

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