Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G013420 Citrullus lanatus HOM05D004419 ORTHO05D005480 1.5e-58 229.2 109 100.0
MELO3C015209.2 Cucumis melo HOM05D004419 ORTHO05D005480 7.7e-50 200.3 97 96.9
CsaV3_1G042600 Cucumis sativus L. HOM05D004419 ORTHO05D005480 7.7e-50 200.3 97 96.9
Sed0001509 Sechium edule HOM05D004419 ORTHO05D005480 1.4e-46 189.5 94 93.6
GSVIVG01025322001 Vitis vinifera HOM05D004419 ORTHO05D005480 4.1e-43 177.9 87 94.3
FvH4_3g43600 Fragaria vesca HOM05D004419 ORTHO05D005480 4.5e-42 174.5 93 87.1
FAN21G0217 Fragaria x ananassa HOM05D004419 ORTHO05D005480 1.0e-41 173.3 93 86.0
FAN25G0488 Fragaria x ananassa HOM05D004419 ORTHO05D005480 1.3e-41 172.9 95 84.2
RcHm_v2.0_Chr5g0078171 Rosa chinensis HOM05D004419 ORTHO05D005480 1.3e-41 172.9 93 84.9
Dinv36300 Davidia involucrata HOM05D004419 ORTHO05D005480 1.7e-41 172.6 93 86.0
Cpa.g.sc84.102 Carica papaya HOM05D004419 ORTHO05D005480 2.2e-41 172.2 86 90.7
FAN11G1953 Fragaria x ananassa HOM05D004419 ORTHO05D005480 3.8e-41 171.4 93 86.0
RcHm_v2.0_Chr5g0078291 Rosa chinensis HOM05D004419 ORTHO05D005480 3.8e-41 171.4 93 84.9
Lj3g0003248 Lotus japonicus HOM05D004419 ORTHO05D005480 6.5e-41 170.6 94 83.0
Prupe.6G015700 Prunus persica HOM05D004419 ORTHO05D005480 3.2e-40 168.3 85 90.6
CANSAT54G1224 Cannabis sativa HOM05D004419 ORTHO05D005480 4.2e-40 167.9 94 85.1
A05p27970 Brassica napus HOM05D004419 ORTHO05D005480 5.5e-40 167.5 93 82.8
Haze_23057 Corylus avellana HOM05D004419 ORTHO05D005480 5.5e-40 167.5 93 84.9
TWI60G0085 Tripterygium wilfordii HOM05D004419 ORTHO05D005480 5.5e-40 167.5 94 83.0
TAR623G0092 Trochodendron aralioides HOM05D004419 ORTHO05D005480 5.5e-40 167.5 93 81.7
Medtr4g066020 Medicago truncatula HOM05D004419 ORTHO05D005480 7.2e-40 167.2 93 81.7
Haze_23052 Corylus avellana HOM05D004419 ORTHO05D005480 1.2e-39 166.4 93 83.9
Lj2C654G2 Lonicera japonica HOM05D004419 ORTHO05D005480 1.2e-39 166.4 85 89.4
Aa31LG8G7630 Aethionema arabicum HOM05D004419 ORTHO05D005480 1.6e-39 166.0 93 81.7
BcaB06g26154 Brassica carinata HOM05D004419 ORTHO05D005480 1.6e-39 166.0 93 81.7
BraA05t21680Z Brassica rapa HOM05D004419 ORTHO05D005480 1.6e-39 166.0 93 81.7
MD03G1020700 Malus domestica HOM05D004419 ORTHO05D005480 1.6e-39 166.0 85 90.6
BcaC05g28278 Brassica carinata HOM05D004419 ORTHO05D005480 2.1e-39 165.6 93 81.7
Cfa009704 Carpinus fangiana HOM05D004419 ORTHO05D005480 2.1e-39 165.6 93 83.9
Potri.001G016200 Populus trichocarpa HOM05D004419 ORTHO05D005480 2.1e-39 165.6 93 79.6
AT3G20810 Arabidopsis thaliana HOM05D004419 ORTHO05D005480 3.6e-39 164.9 93 81.7
BcaC05g28276 Brassica carinata HOM05D004419 ORTHO05D005480 3.6e-39 164.9 93 80.6
C05p43260 Brassica napus HOM05D004419 ORTHO05D005480 3.6e-39 164.9 93 80.6
BolC5t33056H Brassica oleracea HOM05D004419 ORTHO05D005480 3.6e-39 164.9 93 80.6
Carub.0003s2077 Capsella rubella HOM05D004419 ORTHO05D005480 4.7e-39 164.5 93 79.6
Nitab4.5_0003250g0020 Nicotiana tabacum HOM05D004419 ORTHO05D005480 4.7e-39 164.5 88 84.1
Sp3g18830 Schrenkiella parvula HOM05D004419 ORTHO05D005480 4.7e-39 164.5 93 80.6
Hund22076 Selenicereus undatus HOM05D004419 ORTHO05D005480 4.7e-39 164.5 99 76.8
Migut.D00562 Erythranthe guttata HOM05D004419 ORTHO05D005480 6.1e-39 164.1 86 86.0
Eucgr.J00814 Eucalyptus grandis HOM05D004419 ORTHO05D005480 6.1e-39 164.1 93 78.5
Solyc01g006680.4 Solanum lycopersicum HOM05D004419 ORTHO05D005480 6.1e-39 164.1 89 82.0
Sopen01g002670 Solanum pennellii HOM05D004419 ORTHO05D005480 6.1e-39 164.1 89 82.0
PGSC0003DMG400021346 Solanum tuberosum HOM05D004419 ORTHO05D005480 6.1e-39 164.1 89 82.0
Nitab4.5_0000175g0140 Nicotiana tabacum HOM05D004419 ORTHO05D005480 8.0e-39 163.7 88 84.1
Oeu024454.3 Olea europaea HOM05D004419 ORTHO05D005480 8.0e-39 163.7 85 88.2
Ciclev10015488m.g Citrus clementina HOM05D004419 ORTHO05D005480 1.0e-38 163.3 96 80.2
Thecc.09G224700 Theobroma cacao HOM05D004419 ORTHO05D005480 1.0e-38 163.3 93 80.6
TPR.G13661 Trifolium pratense HOM05D004419 ORTHO05D005633 1.0e-38 163.3 93 80.6
arahy.Tifrunner.gnm1.ann1.6DX332 Arachis hypogaea HOM05D004419 ORTHO05D005480 1.4e-38 162.9 85 87.1
arahy.Tifrunner.gnm1.ann1.LD2WL8 Arachis hypogaea HOM05D004419 ORTHO05D005480 1.4e-38 162.9 85 87.1
Nn7g36075 Nelumbo nucifera HOM05D004419 ORTHO05D005480 1.4e-38 162.9 86 84.9
AL3G34730 Arabidopsis lyrata HOM05D004419 ORTHO05D005480 1.8e-38 162.5 102 73.5
DCAR_002041 Daucus carota HOM05D004419 ORTHO05D005480 1.8e-38 162.5 100 76.0
SGA_v2.0_scaffold1G00802 Striga asiatica HOM05D004419 ORTHO05D005480 2.3e-38 162.2 86 84.9
Gohir.A06G108900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 3.0e-38 161.8 94 80.9
Gohir.D06G112900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 4.0e-38 161.4 94 79.8
EL10Ac4g10313 Beta vulgaris HOM05D004419 ORTHO05D005480 5.2e-38 161.0 88 81.8
Hma1.2p1_0143F.1_g064490 Hydrangea macrophylla HOM05D004419 ORTHO05D005480 8.8e-38 160.2 93 79.6
QL01p006124 Quercus lobata HOM05D004419 ORTHO05D005480 8.8e-38 160.2 86 87.2
Atru.chr3.2519_Atru.chr3.2520 Acer truncatum HOM05D004419 ORTHO05D005480 1.2e-37 159.8 93 78.5
Aqoxy2G00106 Aquilegia oxysepala HOM05D004419 ORTHO05D005480 1.2e-37 159.8 85 82.4
Cc01_g04260 Coffea canephora HOM05D004419 ORTHO05D005480 1.2e-37 159.8 93 78.5
CSS0021936 Camellia sinensis var. sinensis HOM05D004419 ORTHO05D005480 3.3e-37 158.3 86 84.9
VMungo1127G0574 Vigna mungo HOM05D004419 ORTHO05D005480 3.3e-37 158.3 93 78.5
Glyma.12G055000 Glycine max HOM05D004419 ORTHO05D005480 4.4e-37 157.9 93 79.6
Duzib168G0032 Durio zibethinus HOM05D004419 ORTHO05D005480 5.7e-37 157.5 86 83.7
Glyma.11G130600 Glycine max HOM05D004419 ORTHO05D005480 7.5e-37 157.1 93 79.6
Phvul.011G056900 Phaseolus vulgaris HOM05D004419 ORTHO05D005480 7.5e-37 157.1 93 78.5
Actinidia39384 Actinidia chinensis HOM05D004419 ORTHO05D005480 1.3e-36 156.4 87 80.5
ECA233G0260 Erigeron canadensis HOM05D004419 ORTHO05D005480 2.2e-36 155.6 92 77.2
MBI01_g41296_MAGBIO Magnolia biondii HOM05D004419 ORTHO05D005480 2.2e-36 155.6 87 79.3
Ca_20582_v3 Cicer arietinum L. HOM05D004419 ORTHO05D005480 3.7e-36 154.8 93 77.4
Lsat_1_v5_gn_6_50061 Lactuca sativa HOM05D004419 ORTHO05D005480 3.7e-36 154.8 84 84.5
PSO384G0662 Papaver somniferum HOM05D004419 ORTHO05D005480 6.3e-36 154.1 90 75.6
AUR62019254 Chenopodium quinoa HOM05D004419 ORTHO05D005480 8.2e-36 153.7 86 80.2
AUR62043680 Chenopodium quinoa HOM05D004419 ORTHO05D005480 8.2e-36 153.7 86 80.2
FAN16G1269 Fragaria x ananassa HOM05D004419 ORTHO05D005480 1.4e-35 152.9 80 90.0
THA.LOC104816908 Tarenaya hassleriana HOM05D004419 ORTHO05D005480 1.4e-35 152.9 95 72.6
HanXRQChr02g0056491 Helianthus annuus HOM05D004419 ORTHO05D005480 1.8e-35 152.5 93 76.3
AUR62000082 Chenopodium quinoa HOM05D004419 ORTHO05D005480 2.4e-35 152.1 86 80.2
vmacro12711 Vaccinium macrocarpon HOM05D004419 ORTHO05D005480 2.4e-35 152.1 93 74.2
Lalb_Chr01g0003291 Lupinus albus HOM05D004419 ORTHO05D005480 3.1e-35 151.8 90 77.8
Ah.04g161770 Amaranthus hybridus HOM05D004419 ORTHO05D005480 9.1e-35 150.2 94 74.5
HanXRQChr13g0403921 Helianthus annuus HOM05D004419 ORTHO05D005480 9.1e-35 150.2 93 74.2
Rhsim01G0189600 Rhododendron simsii HOM05D004419 ORTHO05D005480 1.2e-34 149.8 93 74.2
Os09g0489200 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 1.6e-34 149.4 86 75.6
HPP92_017970 Vanilla planifolia HOM05D004419 ORTHO05D005480 1.5e-32 142.9 84 73.8
MD11G1022000 Malus domestica HOM05D004419 ORTHO05D005480 4.2e-32 141.4 90 73.3
SHI30509 Sapria himalayana HOM05D004419 ORTHO05D005480 2.1e-31 139.0 84 75.0
Os08g0508500 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 8.0e-31 137.1 84 72.6
Ah.06g193530 Amaranthus hybridus HOM05D004419 ORTHO05D005480 5.2e-30 134.4 70 84.3
Pp3c17_10850 Physcomitrium patens HOM05D004419 ORTHO05D005480 1.2e-29 133.3 84 69.0
AagrBONN_evm.TU.Sc2ySwM_117.3437 Anthoceros agrestis HOM05D004419 ORTHO05D005480 3.4e-29 131.7 84 70.2
RcHm_v2.0_Chr5g0076021 Rosa chinensis HOM05D004419 ORTHO05D005480 2.2e-28 129.0 69 81.2
Lalb_Chr19g0138221 Lupinus albus HOM05D004419 ORTHO05D005480 5.4e-27 124.4 73 79.5
SMO364G0845 Selaginella moellendorffii HOM05D004419 ORTHO05D005480 1.6e-26 122.9 86 62.8
RcHm_v2.0_Chr5g0078201 Rosa chinensis HOM05D004419 ORTHO05D005480 6.5e-25 117.5 64 82.8
ATR0605G084 Amborella trichopoda HOM05D004419 ORTHO05D005480 1.1e-24 116.7 70 72.9
Mapoly0036s0149 Marchantia polymorpha HOM05D004419 ORTHO05D005480 1.9e-24 115.9 84 63.1
PGR119G1205 Punica granatum HOM05D004419 ORTHO05D005480 4.2e-24 114.8 64 78.1
CBR_g68529 Chara braunii HOM05D004419 ORTHO05D005480 2.8e-23 112.1 102 49.0
CDE05G0158 Ceratophyllum demersum HOM05D004419 ORTHO05D005480 4.0e-22 108.2 62 77.4
CARHR096670 Cardamine hirsuta HOM05D004419 ORTHO05D005480 8.9e-22 107.1 59 79.7
FvH4_3g43632 Fragaria vesca HOM05D004419 ORTHO05D005480 2.2e-20 102.4 54 90.7
FAN11G3211 Fragaria x ananassa HOM05D004419 ORTHO05D005480 2.2e-20 102.4 54 90.7
C03p51290 Brassica napus HOM05D004419 ORTHO05D005480 4.9e-20 101.3 59 72.9
Manes.06G168600 Manihot esculenta HOM05D004419 ORTHO05D005480 8.3e-20 100.5 93 58.1
CiPaw.13G165000 Carya illinoinensis HOM05D004419 ORTHO05D005480 1.2e-18 96.7 57 84.2
Peaxi162Scf00559g00213 Petunia axillaris HOM05D004419 ORTHO05D005480 1.2e-18 96.7 57 80.7
PRCOL_00002632 Prasinoderma coloniale HOM05D004419 ORTHO05D005480 2.1e-15 85.9 85 45.9
Pp3c5_1010 Physcomitrium patens HOM05D004419 ORTHO05D005480 4.7e-15 84.7 87 50.6
MCO01G020 Micromonas commoda HOM05D004419 ORTHO05D005480 2.6e-13 79.0 86 44.2
MCO01G585 Micromonas commoda HOM05D004419 ORTHO05D005480 2.6e-13 79.0 86 44.2
Gorai.010G128800 Gossypium raimondii HOM05D004419 ORTHO05D005480 3.4e-13 78.6 44 84.1
MBI01_g05106_MAGBIO Magnolia biondii HOM05D004419 ORTHO05D005480 3.4e-13 78.6 45 68.9
Duzib150G1622 Durio zibethinus HOM05D004419 ORTHO05D005480 9.8e-13 77.0 44 84.1
Cre11.g467768 Chlamydomonas reinhardtii HOM05D004419 ORTHO05D005480 6.0e-10 67.8 46 63.0
MCO01G088 Micromonas commoda HOM05D004419 ORTHO05D005480 1.0e-09 67.0 96 39.6
MCO11G675 Micromonas commoda HOM05D004419 ORTHO05D005480 1.1e-08 63.5 84 40.5
PRCOL_00002851 Prasinoderma coloniale HOM05D004419 ORTHO05D005480 3.3e-08 62.0 88 36.4
Actinidia06326 Actinidia chinensis HOM05D004419 ORTHO05D005480 4.3e-08 61.6 45 64.4
CAN.G388.54 Capsicum annuum HOM05D004419 ORTHO05D005480 2.8e-07 58.9 32 81.2
MCO05G292 Micromonas commoda HOM05D004419 ORTHO05D005480 4.7e-07 58.2 84 36.9
Psat7g213880 Pisum sativum HOM05D004419 ORTHO05D005480 4.7e-07 58.2 32 87.5
BcaC05g28277 Brassica carinata HOM05D004419 ORTHO05D005480 8.0e-07 57.4 32 78.1
MSTRG.21407 Avicennia marina HOM05D004419 ORTHO05D005480 2.3e-06 55.8 31 83.9
Medtr1g071300 Medicago truncatula HOM05D004978 ORTHO05D005621 3.1e-06 55.5 91 38.5


User provided reference genes

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