Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 0.0e+00 1106.3 604 100.0
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 1.7e-263 912.5 526 93.0
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 1.7e-263 912.5 526 93.3
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 1.1e-254 883.2 523 90.8
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 9.3e-222 773.9 497 80.9
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 1.6e-221 773.1 508 80.1
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 1.8e-220 769.6 510 77.1
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 1.9e-219 766.1 505 83.2
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 2.5e-219 765.8 502 82.9
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 4.3e-219 765.0 502 82.7
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 1.4e-217 760.0 502 82.3
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 1.5e-216 756.5 512 77.9
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 4.5e-216 755.0 527 79.3
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 2.9e-215 752.3 502 80.5
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 1.9e-214 749.6 529 79.6
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 4.2e-214 748.4 502 78.5
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 9.3e-214 747.3 522 76.2
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 4.6e-213 745.0 506 77.7
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 6.1e-213 744.6 502 78.5
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 6.1e-213 744.6 501 76.8
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 3.9e-212 741.9 516 79.8
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 3.3e-211 738.8 510 75.1
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 5.7e-211 738.0 524 79.6
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 7.4e-211 737.6 508 78.1
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 7.4e-211 737.6 501 76.2
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 2.2e-210 736.1 518 76.3
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 3.7e-210 735.3 519 80.0
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 4.8e-210 734.9 518 76.6
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 1.1e-209 733.8 527 79.1
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 1.8e-209 733.0 510 77.6
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 2.4e-209 732.6 523 79.2
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 2.4e-209 732.6 518 76.4
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 3.1e-209 732.3 527 73.8
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 3.1e-209 732.3 542 76.9
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 3.1e-209 732.3 544 76.7
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 4.1e-209 731.9 536 74.3
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 5.3e-209 731.5 510 77.8
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 5.3e-209 731.5 525 77.9
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 9.1e-209 730.7 531 74.8
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 1.2e-208 730.3 529 77.1
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 1.2e-208 730.3 518 76.1
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 1.2e-208 730.3 525 76.0
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 1.5e-208 729.9 518 76.4
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 2.0e-208 729.6 515 76.9
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 7.7e-208 727.6 525 75.0
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 7.7e-208 727.6 505 77.8
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 7.7e-208 727.6 515 76.1
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 1.3e-207 726.9 510 77.6
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 8.5e-207 724.2 513 76.0
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 1.4e-206 723.4 506 77.1
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 1.4e-206 723.4 510 78.0
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 9.4e-206 720.7 508 77.4
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 2.1e-205 719.5 498 78.5
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 2.7e-205 719.2 508 77.2
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 3.6e-205 718.8 513 73.7
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 3.6e-205 718.8 533 73.7
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 3.6e-205 718.8 509 76.0
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 3.6e-205 718.8 510 77.3
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 6.1e-205 718.0 502 77.3
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 1.4e-204 716.8 506 77.9
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 1.8e-204 716.5 510 77.5
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 2.3e-204 716.1 520 75.2
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 7.4e-203 711.1 498 78.5
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 8.2e-202 707.6 516 75.0
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 1.8e-201 706.4 519 72.8
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 2.6e-200 702.6 508 75.2
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 1.0e-196 690.6 525 72.2
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 8.8e-196 687.6 502 76.9
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 2.0e-195 686.4 509 74.3
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 1.8e-193 679.9 561 70.1
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 2.4e-193 679.5 477 75.1
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 5.3e-193 678.3 507 72.8
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 9.1e-193 677.6 527 72.1
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 2.0e-192 676.4 504 73.4
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 2.9e-191 672.5 501 70.5
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 5.0e-191 671.8 451 76.7
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 1.9e-190 669.8 511 70.8
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 3.0e-188 662.5 503 66.6
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 1.3e-186 657.1 501 65.3
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 2.7e-184 649.4 504 67.7
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 1.7e-183 646.7 515 67.8
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 6.5e-183 644.8 513 69.2
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 1.0e-180 637.5 527 69.1
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 1.8e-180 636.7 500 67.0
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 5.9e-176 621.7 505 66.9
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 1.3e-175 620.5 501 70.5
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 1.5e-174 617.1 503 65.0
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 8.9e-172 607.8 461 73.1
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 6.3e-170 601.7 520 66.2
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.1e-161 574.3 418 72.5
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 2.5e-158 563.1 430 72.6
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 2.5e-158 563.1 430 72.6
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 2.7e-152 543.1 409 70.2
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 2.7e-144 516.5 512 59.4
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 3.5e-136 489.6 359 75.2
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 2.7e-128 463.4 524 51.1
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 2.6e-123 446.8 501 51.1
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 2.0e-107 394.0 506 46.4
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 7.6e-107 392.1 501 47.3
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 1.0e-98 365.2 294 73.8
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 2.5e-97 360.5 513 41.7
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 1.2e-96 358.2 209 85.2
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 1.4e-92 344.7 529 39.1
CiPaw.07G076900 Carya illinoinensis HOM05D002281 ORTHO05D006774 6.1e-88 329.3 207 81.2
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 1.7e-74 284.6 158 84.2
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 1.2e-70 271.9 155 83.9
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 7.5e-54 216.1 164 69.5
Actinidia39977 Actinidia chinensis HOM05D002281 ORTHO05D006774 2.0e-51 208.0 144 69.4
AL685U10020 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 1.6e-48 198.4 119 83.2
QL03p032920 Quercus lobata HOM05D002281 ORTHO05D006774 3.1e-39 167.5 102 84.3
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 1.5e-38 165.2 205 49.8
QL03p033074 Quercus lobata HOM05D002281 ORTHO05D006774 2.9e-37 161.0 94 88.3
Solyc01g015200.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 6.8e-23 113.2 167 41.3
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.9e-21 107.8 82 70.7
Solyc01g013970.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.1e-19 101.7 88 58.0
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 6.6e-18 96.7 69 69.6
Solyc01g014000.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 3.3e-17 94.4 70 67.1
Actinidia39976 Actinidia chinensis HOM05D002281 ORTHO05D006774 6.2e-16 90.1 59 79.7
BolC1t05755H Brassica oleracea HOM05D002281 ORTHO05D006774 6.2e-16 90.1 54 81.5
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 6.2e-16 90.1 53 84.9
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 5.4e-12 77.0 71 66.2
BraA01t04528Z Brassica rapa HOM05D002281 ORTHO05D006774 1.9e-09 68.6 49 75.5
BolC1t05758H Brassica oleracea HOM05D002281 ORTHO05D006774 4.3e-09 67.4 42 81.0


User provided reference genes

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