Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 0.0e+00 1236.5 597 100.0
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 7.6e-293 1010.0 548 91.2
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 3.6e-290 1001.1 548 90.5
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 1.1e-280 969.5 548 87.2
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 1.7e-244 849.4 511 79.6
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 8.6e-244 847.0 538 77.7
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 1.6e-242 842.8 537 77.3
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 1.6e-242 842.8 587 72.7
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 6.1e-242 840.9 538 77.3
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 6.1e-242 840.9 543 77.0
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 1.4e-241 839.7 587 72.4
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 8.9e-241 837.0 550 76.4
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 2.6e-240 835.5 538 76.2
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 3.4e-240 835.1 538 77.1
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 4.4e-240 834.7 540 77.0
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 9.8e-240 833.6 548 76.6
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 1.7e-239 832.8 545 76.3
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 4.9e-239 831.2 471 87.9
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 8.3e-239 830.5 540 76.7
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 1.1e-238 830.1 540 76.7
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 3.2e-238 828.6 534 76.4
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 2.0e-237 825.9 565 73.3
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 1.3e-236 823.2 520 76.7
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 2.3e-236 822.4 549 74.7
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 6.6e-236 820.8 536 76.5
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 8.6e-236 820.5 517 78.3
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.5e-235 818.9 593 70.2
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 3.3e-235 818.5 527 76.3
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 1.4e-233 813.1 537 75.2
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 3.1e-233 812.0 534 74.5
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 4.0e-233 811.6 512 77.9
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 4.0e-233 811.6 541 75.0
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 2.0e-232 809.3 539 74.4
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 2.6e-232 808.9 549 73.6
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 2.6e-232 808.9 537 75.0
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 1.3e-231 806.6 549 73.2
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 2.2e-231 805.8 575 70.3
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 2.9e-231 805.4 575 70.4
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 2.4e-230 802.4 526 75.1
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 2.4e-230 802.4 537 73.4
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 4.1e-230 801.6 589 68.9
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 5.4e-230 801.2 517 77.0
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 5.4e-230 801.2 538 73.4
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 7.0e-230 800.8 534 74.3
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.2e-229 800.0 539 73.5
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 3.5e-229 798.5 569 70.5
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 3.5e-229 798.5 537 73.9
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 3.5e-229 798.5 550 72.7
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 7.8e-229 797.3 528 74.6
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 1.5e-227 793.1 591 68.4
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 5.6e-227 791.2 523 73.6
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 1.6e-226 789.6 539 72.9
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 2.1e-226 789.3 522 74.1
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.8e-226 788.9 532 74.2
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 1.1e-225 786.9 522 73.9
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 1.1e-225 786.9 528 73.1
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.8e-225 786.2 550 71.6
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 3.1e-225 785.4 525 73.7
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 1.5e-224 783.1 560 69.3
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 2.6e-224 782.3 521 74.3
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 3.4e-224 781.9 607 66.6
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 3.7e-223 778.5 537 70.9
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 1.4e-222 776.5 532 71.4
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 1.4e-222 776.5 522 73.0
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 1.9e-222 776.2 524 73.3
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 3.2e-222 775.4 523 72.3
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 3.2e-222 775.4 534 71.3
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 1.2e-221 773.5 550 70.4
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.7e-221 772.3 503 75.0
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.7e-221 772.3 523 73.4
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 2.7e-221 772.3 512 75.2
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 3.0e-220 768.8 536 70.7
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 6.6e-220 767.7 527 72.1
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 1.1e-219 766.9 557 68.9
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 1.5e-219 766.5 534 71.0
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 1.9e-219 766.1 515 73.2
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 8.1e-218 760.8 526 70.9
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 5.2e-217 758.1 534 70.2
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 5.2e-217 758.1 557 69.3
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 8.9e-217 757.3 530 71.3
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 8.9e-217 757.3 538 69.5
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 1.2e-216 756.9 570 66.3
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 2.6e-216 755.7 560 67.1
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 4.4e-216 755.0 523 71.5
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 5.8e-216 754.6 518 71.0
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 7.6e-216 754.2 518 70.8
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 2.2e-215 752.7 571 65.3
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 3.8e-215 751.9 552 69.9
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 1.4e-214 750.0 571 66.2
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 1.4e-214 750.0 511 72.4
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 3.2e-214 748.8 571 65.1
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 3.2e-214 748.8 526 68.1
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 7.1e-214 747.7 517 71.0
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 1.0e-212 743.8 527 70.8
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 1.7e-212 743.0 571 67.3
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 5.1e-212 741.5 571 66.9
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 8.6e-212 740.7 532 70.3
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 1.5e-211 740.0 529 69.6
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 4.3e-211 738.4 520 70.6
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 4.3e-211 738.4 527 70.0
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 4.3e-211 738.4 527 70.2
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 4.3e-211 738.4 527 70.0
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 9.6e-211 737.3 550 66.9
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 2.1e-210 736.1 534 68.4
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 2.8e-210 735.7 530 70.0
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 1.8e-209 733.0 525 68.0
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 3.1e-209 732.3 582 64.8
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 5.2e-209 731.5 582 65.3
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 1.2e-208 730.3 582 65.1
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 1.2e-208 730.3 582 65.1
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 1.5e-208 729.9 582 65.3
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 1.5e-208 729.9 532 68.6
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 2.0e-208 729.6 582 64.9
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 5.8e-208 728.0 472 75.6
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 7.6e-208 727.6 559 65.7
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 2.9e-207 725.7 537 68.0
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 1.7e-204 716.5 522 68.2
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 4.3e-203 711.8 530 68.1
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 3.4e-200 702.2 522 68.2
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.6e-194 683.3 518 68.1
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 4.5e-192 675.2 566 62.7
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 5.1e-188 661.8 495 66.9
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 4.9e-183 645.2 543 62.2
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 1.1e-174 617.5 527 59.6
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 2.6e-155 553.1 538 55.9
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 2.6e-155 553.1 561 54.2
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 4.8e-154 548.9 543 56.4
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 1.8e-153 547.0 561 54.5
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 2.9e-151 539.7 431 66.6
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 4.7e-133 479.2 354 69.2
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 4.1e-121 439.5 335 66.9
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 3.1e-116 423.3 264 81.4
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.9e-113 414.1 369 58.8
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 2.3e-108 397.1 237 80.2
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 2.2e-106 390.6 328 62.5
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.4e-92 344.0 205 82.0
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 4.4e-91 339.7 294 57.5
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 4.2e-89 333.2 545 43.1
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 5.8e-83 312.8 298 59.4
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 1.6e-77 294.7 285 54.7
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 4.0e-76 290.0 198 74.2
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 2.0e-75 287.7 184 71.2
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 9.3e-65 252.3 258 55.0
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 4.1e-60 236.9 145 73.8
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 7.7e-59 232.6 483 31.3
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 3.2e-57 227.3 212 55.2
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 1.9e-49 201.4 145 66.9
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 1.1e-46 192.2 277 37.9
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.0e-35 154.8 121 61.2
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 4.5e-35 153.7 196 43.4
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 7.7e-35 152.9 104 65.4
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 2.0e-30 138.3 138 48.6
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 8.3e-29 132.9 105 59.0
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 4.1e-28 130.6 100 65.0
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 3.8e-26 124.0 177 44.6
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 8.8e-23 112.8 121 51.2
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 1.1e-17 95.9 57 75.4
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 4.4e-14 84.0 67 59.7
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 3.2e-12 77.8 43 83.7
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 3.3e-09 67.8 41 70.7


User provided reference genes

Program Settings