Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 7.4e-240 833.6 450 100.0
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 7.4e-224 780.4 458 93.7
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 8.0e-210 733.8 452 87.6
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 6.0e-181 637.9 459 74.3
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 5.6e-179 631.3 458 74.2
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 1.6e-178 629.8 458 74.5
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 1.1e-177 627.1 460 74.1
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 3.1e-177 625.5 455 74.9
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 2.0e-176 622.9 439 76.5
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.7e-175 619.8 457 75.9
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 2.9e-175 619.0 457 75.5
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 6.4e-175 617.8 456 74.8
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 1.9e-174 616.3 461 73.5
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 2.1e-173 612.8 460 75.0
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 3.5e-173 612.1 461 74.4
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 3.5e-173 612.1 459 73.6
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 6.0e-173 611.3 458 74.5
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 7.8e-173 610.9 459 74.1
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 1.7e-172 609.8 447 74.9
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 3.9e-172 608.6 459 73.2
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 6.6e-172 607.8 460 74.8
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 4.7e-170 601.7 446 74.2
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 4.7e-170 601.7 447 73.8
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.1e-169 600.5 458 72.7
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 1.4e-169 600.1 459 72.8
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 1.8e-169 599.7 457 73.3
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 1.2e-168 597.0 455 71.6
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 2.0e-168 596.3 455 71.6
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 4.4e-168 595.1 449 72.6
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 4.4e-168 595.1 459 72.5
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 1.7e-167 593.2 460 71.5
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 3.7e-167 592.0 456 71.3
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 1.9e-166 589.7 454 71.6
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 1.9e-166 589.7 455 71.2
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 3.2e-166 589.0 458 71.0
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 3.2e-166 589.0 456 72.1
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 5.4e-166 588.2 456 70.8
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 9.2e-166 587.4 429 73.4
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 9.2e-166 587.4 456 70.6
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 2.1e-165 586.3 455 72.1
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 2.7e-165 585.9 429 73.2
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 3.5e-165 585.5 457 72.6
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 3.5e-165 585.5 461 70.7
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 3.5e-165 585.5 429 73.2
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 4.6e-165 585.1 464 69.4
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 4.6e-165 585.1 456 71.9
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 1.0e-164 583.9 457 72.2
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 3.9e-164 582.0 451 72.3
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 3.9e-164 582.0 450 72.0
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 5.1e-164 581.6 459 71.5
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 1.1e-163 580.5 459 71.0
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 9.5e-163 577.4 461 72.0
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 1.6e-162 576.6 456 70.0
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 2.1e-162 576.2 454 69.4
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 3.6e-162 575.5 456 67.8
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 4.7e-162 575.1 456 70.6
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 1.1e-161 573.9 447 70.5
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 2.4e-161 572.8 450 67.8
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 3.1e-161 572.4 457 67.6
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 5.2e-161 571.6 451 71.0
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 7.6e-160 567.8 456 68.4
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 1.7e-159 566.6 449 70.4
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 2.2e-159 566.2 459 68.2
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 2.2e-159 566.2 449 70.6
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 8.4e-159 564.3 375 78.4
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.9e-158 563.1 452 68.4
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 3.2e-158 562.4 462 68.2
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 4.2e-158 562.0 456 68.0
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 1.2e-157 560.5 307 98.0
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 1.6e-157 560.1 456 68.0
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 2.1e-157 559.7 456 68.0
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 3.5e-157 558.9 439 68.1
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 7.8e-157 557.8 450 68.2
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 1.3e-156 557.0 457 67.8
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 2.3e-156 556.2 439 67.7
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 9.6e-155 550.8 431 71.7
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 1.6e-154 550.1 436 68.1
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.6e-154 550.1 457 68.1
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 2.1e-154 549.7 436 67.9
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 8.1e-154 547.7 450 67.1
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 1.1e-153 547.4 436 67.9
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.4e-153 547.0 463 65.9
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.4e-153 547.0 463 65.9
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 3.1e-153 545.8 458 68.1
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 4.0e-153 545.4 451 67.8
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 5.3e-153 545.0 455 67.0
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 1.2e-152 543.9 451 67.8
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.2e-152 543.9 379 76.3
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 3.4e-152 542.3 461 68.1
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 3.4e-152 542.3 461 68.1
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 5.8e-152 541.6 439 69.0
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 7.6e-152 541.2 452 66.2
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 7.6e-152 541.2 452 66.2
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 7.6e-152 541.2 452 66.2
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 1.3e-151 540.4 462 66.9
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 2.7e-149 532.7 452 66.4
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 1.3e-148 530.4 362 77.6
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 3.0e-148 529.3 341 80.4
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 1.9e-147 526.6 365 73.7
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 4.8e-146 521.9 403 71.0
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.3e-140 503.8 455 62.9
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 3.9e-140 502.3 457 64.1
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.7e-138 495.7 461 61.8
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.5e-128 463.8 317 76.3
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 8.4e-127 458.0 311 78.1
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 4.3e-123 445.7 290 81.7
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 5.1e-116 422.2 391 59.1
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 9.7e-115 417.9 295 74.6
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 6.3e-114 415.2 373 59.5
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 9.1e-113 411.4 278 74.1
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.5e-112 410.6 282 76.6
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 2.6e-112 409.8 431 55.5
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 1.7e-111 407.1 368 58.7
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 1.7e-111 407.1 371 58.0
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 9.4e-110 401.4 279 77.1
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 9.7e-107 391.3 371 55.0
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 4.8e-98 362.5 364 56.6
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 4.1e-97 359.4 361 56.0
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 7.0e-97 358.6 300 65.3
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 4.7e-93 345.9 373 53.4
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 1.4e-92 344.4 361 52.9
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 1.8e-92 344.0 342 57.3
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 2.3e-92 343.6 381 51.2
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 5.9e-88 328.9 368 51.4
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 2.7e-85 320.1 388 47.9
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 5.0e-79 299.3 243 67.5
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 2.2e-66 257.3 332 49.1
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 9.2e-49 198.7 150 66.7
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 2.7e-48 197.2 345 40.3
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.7e-40 170.6 163 57.7
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 2.3e-39 167.5 222 46.8
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.1e-37 161.0 116 71.6
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 1.7e-34 151.4 138 57.2
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 7.8e-32 142.5 83 81.9
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.9e-31 140.2 115 64.3
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.1e-30 138.7 171 48.0
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 3.2e-25 120.6 73 86.3
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.2e-21 106.3 87 70.1
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 2.1e-13 81.3 102 46.1
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 2.4e-12 77.8 75 50.7
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.0e-07 62.4 58 62.1
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 1.3e-07 62.0 138 34.1


User provided reference genes

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