Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G003170 Citrullus lanatus HOM05D006835 ORTHO05D008587 3.9e-106 389.0 360 100.0
CsaV3_7G002240 Cucumis sativus L. HOM05D006835 ORTHO05D008587 1.5e-78 297.4 328 92.4
MELO3C015685.2 Cucumis melo HOM05D006835 ORTHO05D008587 4.4e-78 295.8 328 92.4
Sed0006636 Sechium edule HOM05D006835 ORTHO05D008587 5.8e-70 268.9 328 88.7
Sed0026152 Sechium edule HOM05D006835 ORTHO05D008587 1.0e-66 258.1 328 87.8
CiPaw.06G113200 Carya illinoinensis HOM05D006835 ORTHO05D008587 1.4e-52 211.1 327 65.7
Thecc.02G149200 Theobroma cacao HOM05D006835 ORTHO05D008587 1.4e-52 211.1 327 81.0
Duzib132G0412 Durio zibethinus HOM05D006835 ORTHO05D008587 3.0e-50 203.4 327 77.4
QL11p057002 Quercus lobata HOM05D006835 ORTHO05D008587 5.1e-50 202.6 327 78.0
Haze_01949 Corylus avellana HOM05D006835 ORTHO05D008587 1.1e-49 201.4 327 76.8
Dinv41853 Davidia involucrata HOM05D006835 ORTHO05D008587 1.5e-49 201.1 326 67.5
COL.COLO4_04808 Corchorus olitorius HOM05D006835 ORTHO05D008587 2.1e-48 197.2 327 78.6
Gohir.A13G063900 Gossypium hirsutum HOM05D006835 ORTHO05D008587 2.8e-48 196.8 327 78.3
Potri.004G209400 Populus trichocarpa HOM05D006835 ORTHO05D008587 1.8e-47 194.1 329 76.3
Rhsim12G0002300 Rhododendron simsii HOM05D006835 ORTHO05D008587 1.8e-47 194.1 325 77.2
Gohir.D13G058000 Gossypium hirsutum HOM05D006835 ORTHO05D008587 4.1e-47 193.0 327 78.3
Lalb_Chr09g0328551 Lupinus albus HOM05D006835 ORTHO05D008587 4.1e-47 193.0 328 77.7
Gorai.013G065400 Gossypium raimondii HOM05D006835 ORTHO05D008587 6.9e-47 192.2 327 78.0
MBI15_g25631_MAGBIO Magnolia biondii HOM05D006835 ORTHO05D008587 1.2e-46 191.4 328 74.1
Manes.15G113100 Manihot esculenta HOM05D006835 ORTHO05D008587 1.0e-45 188.3 328 75.3
Oeu034382.1 Olea europaea HOM05D006835 ORTHO05D008587 1.0e-45 188.3 328 76.2
Ciclev10028825m.g Citrus clementina HOM05D006835 ORTHO05D008587 1.3e-45 188.0 327 76.1
PGR042G3426 Punica granatum HOM05D006835 ORTHO05D008587 1.3e-45 188.0 328 74.1
Sabra04G0141200 Salix brachista HOM05D006835 ORTHO05D008587 2.2e-45 187.2 329 76.0
FAN27G3385 Fragaria x ananassa HOM05D006835 ORTHO05D008587 4.2e-44 183.0 329 76.3
CANSAT25G2962 Cannabis sativa HOM05D006835 ORTHO05D008587 7.2e-44 182.2 326 75.5
CANSAT25G1616 Cannabis sativa HOM05D006835 ORTHO05D008587 9.3e-44 181.8 328 75.0
FvH4_2g17170 Fragaria vesca HOM05D006835 ORTHO05D008587 1.2e-43 181.4 316 78.8
RcHm_v2.0_Chr6g0281661 Rosa chinensis HOM05D006835 ORTHO05D008587 1.2e-43 181.4 328 75.6
Prupe.8G183100 Prunus persica HOM05D006835 ORTHO05D008587 1.6e-43 181.0 329 75.7
arahy.Tifrunner.gnm1.ann1.9A9DF4 Arachis hypogaea HOM05D006835 ORTHO05D008587 2.1e-43 180.6 328 76.2
arahy.Tifrunner.gnm1.ann1.N15UBW Arachis hypogaea HOM05D006835 ORTHO05D008587 2.1e-43 180.6 328 76.2
FAN24G3450 Fragaria x ananassa HOM05D006835 ORTHO05D008587 3.5e-43 179.9 329 76.3
Lj4g0005221 Lotus japonicus HOM05D006835 ORTHO05D008587 1.8e-42 177.6 328 75.0
MD10G1144800 Malus domestica HOM05D006835 ORTHO05D008587 3.0e-42 176.8 316 77.8
unitig_744.g24691 Utricularia gibba HOM05D006835 ORTHO05D008587 5.1e-42 176.0 327 74.9
Actinidia17982 Actinidia chinensis HOM05D006835 ORTHO05D008587 8.7e-42 175.3 321 75.4
ATR0605G237 Amborella trichopoda HOM05D006835 ORTHO05D008587 8.7e-42 175.3 326 70.9
arahy.Tifrunner.gnm1.ann1.ATV9YP Arachis hypogaea HOM05D006835 ORTHO05D008587 1.5e-41 174.5 328 76.2
Hma1.2p1_0332F.1_g127850 Hydrangea macrophylla HOM05D006835 ORTHO05D008587 1.9e-41 174.1 326 76.4
Atru.chr5.3592 Acer truncatum HOM05D006835 ORTHO05D008587 3.3e-41 173.3 327 75.5
arahy.Tifrunner.gnm1.ann1.B8P5ZC Arachis hypogaea HOM05D006835 ORTHO05D008587 4.3e-41 172.9 328 75.9
Potri.009G170300 Populus trichocarpa HOM05D006835 ORTHO05D008587 5.7e-41 172.6 325 75.7
Ca_18740_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 1.3e-40 171.4 328 74.1
Ca_30877_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 1.3e-40 171.4 328 74.1
GSVIVG01023845001 Vitis vinifera HOM05D006835 ORTHO05D008587 1.3e-40 171.4 328 75.6
Nn6g31561 Nelumbo nucifera HOM05D006835 ORTHO05D008587 1.6e-40 171.0 328 75.6
Peaxi162Scf00078g00114 Petunia axillaris HOM05D006835 ORTHO05D008587 2.2e-40 170.6 328 75.0
TWI75G0734 Tripterygium wilfordii HOM05D006835 ORTHO05D008587 2.8e-40 170.2 326 75.2
Glyma.13G141500 Glycine max HOM05D006835 ORTHO05D008587 3.7e-40 169.9 328 74.7
Cc05_g09290 Coffea canephora HOM05D006835 ORTHO05D008587 4.8e-40 169.5 328 73.8
Migut.E01343 Erythranthe guttata HOM05D006835 ORTHO05D008587 4.8e-40 169.5 319 76.5
Eucgr.H05012 Eucalyptus grandis HOM05D006835 ORTHO05D008587 1.1e-39 168.3 328 74.4
Psat7g128400 Pisum sativum HOM05D006835 ORTHO05D008587 1.1e-39 168.3 328 71.3
Cpa.g.sc60.7 Carica papaya HOM05D006835 ORTHO05D008587 1.4e-39 167.9 326 73.6
Lsat_1_v5_gn_1_20201 Lactuca sativa HOM05D006835 ORTHO05D008587 1.4e-39 167.9 328 74.1
Medtr4g084630 Medicago truncatula HOM05D006835 ORTHO05D008587 9.0e-39 165.2 328 72.3
ECA247G0195 Erigeron canadensis HOM05D006835 ORTHO05D008587 1.2e-38 164.9 325 72.0
MSTRG.1776 Avicennia marina HOM05D006835 ORTHO05D008587 3.4e-38 163.3 325 75.1
Hund06347 Selenicereus undatus HOM05D006835 ORTHO05D008587 5.9e-38 162.5 326 72.1
PGSC0003DMG400023133 Solanum tuberosum HOM05D006835 ORTHO05D008587 5.9e-38 162.5 328 73.8
Sc08g0001990 Simmondsia chinensis HOM05D006835 ORTHO05D008587 7.7e-38 162.2 327 70.3
EL10Ac9g21569 Beta vulgaris HOM05D006835 ORTHO05D008587 1.3e-37 161.4 326 72.1
Sopen11g019950 Solanum pennellii HOM05D006835 ORTHO05D008587 1.3e-37 161.4 328 73.5
CAN.G430.3 Capsicum annuum HOM05D006835 ORTHO05D008587 1.7e-37 161.0 328 73.5
SalBow8G5127 Salvia bowleyana HOM05D006835 ORTHO05D008587 2.9e-37 160.2 316 72.8
AUR62010216 Chenopodium quinoa HOM05D006835 ORTHO05D008587 6.5e-37 159.1 327 72.2
AUR62013212 Chenopodium quinoa HOM05D006835 ORTHO05D008587 1.1e-36 158.3 327 72.2
TPR.G31217 Trifolium pratense HOM05D006835 ORTHO05D008587 1.4e-36 157.9 369 61.5
Solyc11g044360.3 Solanum lycopersicum HOM05D006835 ORTHO05D008587 1.9e-36 157.5 316 74.7
Aqoxy6G03057 Aquilegia oxysepala HOM05D006835 ORTHO05D008587 2.5e-36 157.1 328 73.5
Phvul.007G148200 Phaseolus vulgaris HOM05D006835 ORTHO05D008587 9.4e-36 155.2 329 72.6
Atru.BG.81.p Acer truncatum HOM05D006835 ORTHO05D008587 6.1e-35 152.5 312 76.6
Ah.01g010510 Amaranthus hybridus HOM05D006835 ORTHO05D008587 7.9e-35 152.1 326 71.2
ClCG02G010730 Citrullus lanatus HOM05D006835 ORTHO05D008587 1.1e-33 148.3 296 43.2
PSO541G0957 Papaver somniferum HOM05D006835 ORTHO05D008587 5.7e-33 146.0 338 71.0
SGA_v2.0_scaffold144G35876 Striga asiatica HOM05D006835 ORTHO05D008587 5.7e-33 146.0 325 71.7
TPR.G38303 Trifolium pratense HOM05D006835 ORTHO05D008587 4.8e-32 142.9 329 69.3
THA.LOC104806593 Tarenaya hassleriana HOM05D006835 ORTHO05D008587 1.1e-31 141.7 317 42.9
Lsat_1_v5_gn_8_70721 Lactuca sativa HOM05D006835 ORTHO05D008587 4.1e-31 139.8 310 73.5
MD05G1145000 Malus domestica HOM05D006835 ORTHO05D008587 6.9e-31 139.0 304 76.3
Nitab4.5_0000079g0110 Nicotiana tabacum HOM05D006835 ORTHO05D008587 1.5e-30 137.9 328 72.0
Nitab4.5_0004387g0030 Nicotiana tabacum HOM05D006835 ORTHO05D008587 2.6e-30 137.1 328 71.6
Glyma.10G054400 Glycine max HOM05D006835 ORTHO05D008587 1.7e-29 134.4 302 75.5
Sp7g37590 Schrenkiella parvula HOM05D006835 ORTHO05D008587 1.7e-29 134.4 318 62.3
Aa31LG6G16920 Aethionema arabicum HOM05D006835 ORTHO05D008587 2.9e-29 133.7 322 60.9
CARHR293940 Cardamine hirsuta HOM05D006835 ORTHO05D008587 3.8e-29 133.3 327 60.6
Thhalv10004546m.g Eutrema salsugineum HOM05D006835 ORTHO05D008587 6.5e-29 132.5 317 62.8
TAR381G0995 Trochodendron aralioides HOM05D006835 ORTHO05D008587 6.5e-29 132.5 95 67.4
AT4G38160 Arabidopsis thaliana HOM05D006835 ORTHO05D008587 7.2e-28 129.0 317 67.8
DCAR_006210 Daucus carota HOM05D006835 ORTHO05D008587 9.4e-28 128.6 328 62.8
Carub.0007s0005 Capsella rubella HOM05D006835 ORTHO05D008587 1.6e-27 127.9 333 58.9
AL7G10060 Arabidopsis lyrata HOM05D006835 ORTHO05D008587 1.8e-26 124.4 317 60.3
CSS0014591 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 3.0e-26 123.6 305 73.1
CDE04G0383 Ceratophyllum demersum HOM05D006835 ORTHO05D008587 4.4e-25 119.8 323 51.1
VMungo1309G0603 Vigna mungo HOM05D006835 ORTHO05D008587 5.7e-25 119.4 286 76.6
A03p48790 Brassica napus HOM05D006835 ORTHO05D008587 9.7e-25 118.6 335 65.1
Ah.02g121760 Amaranthus hybridus HOM05D006835 ORTHO05D008587 2.8e-24 117.1 87 59.8
C07p46880 Brassica napus HOM05D006835 ORTHO05D008587 3.7e-24 116.7 319 66.8
BolC7t45204H Brassica oleracea HOM05D006835 ORTHO05D008587 3.7e-24 116.7 319 66.8
FAN15G1646 Fragaria x ananassa HOM05D006835 ORTHO05D008587 6.3e-24 115.9 80 67.5
BraA03t13979Z Brassica rapa HOM05D006835 ORTHO05D008587 1.8e-23 114.4 330 64.8
vmacro17000 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 3.2e-20 103.6 318 42.5
Os08g0515800 Oryza sativa ssp. japonica HOM05D006835 ORTHO05D008587 4.7e-19 99.8 330 53.9
SalBow3G3248 Salvia bowleyana HOM05D006835 ORTHO05D008587 8.0e-19 99.0 280 73.2
SalBow8G1833 Salvia bowleyana HOM05D006835 ORTHO05D008587 8.8e-18 95.5 64 67.2
CSS0013930 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 2.0e-17 94.4 64 65.6
SalBow4G0758 Salvia bowleyana HOM05D006835 ORTHO05D008587 5.7e-17 92.8 280 72.5
TAR381G1325 Trochodendron aralioides HOM05D006835 ORTHO05D008587 1.1e-15 88.6 57 70.2
SEGI_34779 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 7.2e-12 75.9 60 53.3
AagrBONN_evm.TU.Sc2ySwM_344.3279 Anthoceros agrestis HOM05D006835 ORTHO05D008587 6.1e-11 72.8 74 51.4
HPP92_022026 Vanilla planifolia HOM05D006835 ORTHO05D008587 1.2e-09 68.6 59 52.5
vmacro17002 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 5.7e-09 66.2 95 42.1
Mapoly0015s0200 Marchantia polymorpha HOM05D006835 ORTHO05D008587 1.7e-08 64.7 89 41.6
SEGI_18890 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 1.6e-06 58.2 44 56.8
vmacro17159 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 5.9e-06 56.2 42 59.5


User provided reference genes

Program Settings