Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G000820 Citrullus lanatus HOM05D003521 ORTHO05D000476 0.0e+00 1723.8 993 100.0
MELO3C023279.2 Cucumis melo HOM05D003521 ORTHO05D000476 0.0e+00 1540.8 1023 88.5
CsaV3_2G017940 Cucumis sativus L. HOM05D003521 ORTHO05D000476 0.0e+00 1456.8 1016 85.0
Sed0014905 Sechium edule HOM05D003521 ORTHO05D000476 0.0e+00 1363.2 1016 81.0
Sed0003107 Sechium edule HOM05D003521 ORTHO05D000476 0.0e+00 1362.1 1021 79.9
QL05p021582 Quercus lobata HOM05D003521 ORTHO05D000476 6.3e-284 981.1 1034 63.4
CiPaw.02G148500 Carya illinoinensis HOM05D003521 ORTHO05D000476 2.9e-281 972.2 1035 60.9
Dinv30477 Davidia involucrata HOM05D003521 ORTHO05D000476 8.8e-278 960.7 1027 61.2
Hma1.2p1_1195F.1_g265855 Hydrangea macrophylla HOM05D003521 ORTHO05D000476 4.9e-276 954.9 1023 61.1
Duzib160G0549 Durio zibethinus HOM05D003521 ORTHO05D000476 2.7e-274 949.1 1031 61.0
Prupe.3G066400 Prunus persica HOM05D003521 ORTHO05D000476 1.3e-273 946.8 1024 62.4
Thecc.06G092900 Theobroma cacao HOM05D003521 ORTHO05D000476 1.9e-272 943.0 1030 61.8
Duzib235G1126 Durio zibethinus HOM05D003521 ORTHO05D000476 8.0e-271 937.6 1030 61.2
CiPaw.01G235400 Carya illinoinensis HOM05D003521 ORTHO05D000476 5.2e-270 934.9 1022 60.0
RcHm_v2.0_Chr2g0139071 Rosa chinensis HOM05D003521 ORTHO05D000476 5.2e-270 934.9 1054 58.3
CSS0047293 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 8.9e-270 934.1 1023 59.8
Ciclev10024803m.g Citrus clementina HOM05D003521 ORTHO05D000476 6.4e-268 927.9 1029 60.0
TAR626G0208 Trochodendron aralioides HOM05D003521 ORTHO05D000476 1.4e-267 926.8 1023 61.5
Lalb_Chr14g0373191 Lupinus albus HOM05D003521 ORTHO05D000476 1.6e-266 923.3 1028 59.2
Atru.chr1.3345 Acer truncatum HOM05D003521 ORTHO05D000476 2.3e-265 919.5 1024 59.4
VMungo1080G0951 Vigna mungo HOM05D003521 ORTHO05D000476 3.3e-264 915.6 1025 59.0
Potri.003G052100 Populus trichocarpa HOM05D003521 ORTHO05D000476 3.6e-263 912.1 1031 59.2
Lalb_Chr24g0395951 Lupinus albus HOM05D003521 ORTHO05D000476 4.7e-263 911.8 1032 58.5
FAN02G3342 Fragaria x ananassa HOM05D003521 ORTHO05D000476 7.5e-261 904.4 1045 58.4
Lj3g0009081 Lotus japonicus HOM05D003521 ORTHO05D000476 1.3e-260 903.7 1041 58.7
GSVIVG01038690001 Vitis vinifera HOM05D003521 ORTHO05D000476 3.7e-260 902.1 1022 59.4
FAN14G2596 Fragaria x ananassa HOM05D003521 ORTHO05D000476 5.0e-257 891.7 1050 57.5
Haze_16353 Corylus avellana HOM05D003521 ORTHO05D000476 1.1e-256 890.6 1185 53.0
FAN05G3380 Fragaria x ananassa HOM05D003521 ORTHO05D000476 1.9e-256 889.8 1062 57.1
TAR383G0706 Trochodendron aralioides HOM05D003521 ORTHO05D000476 1.9e-256 889.8 1016 59.2
Eucgr.F03041 Eucalyptus grandis HOM05D003521 ORTHO05D000476 2.5e-256 889.4 1032 57.7
Ca_01135_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 5.6e-256 888.3 1047 58.0
FvH4_6g31822 Fragaria vesca HOM05D003521 ORTHO05D000476 4.7e-255 885.2 1056 57.1
CSS0015824 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 6.8e-254 881.3 1025 57.4
MD09G1208900 Malus domestica HOM05D003521 ORTHO05D000476 8.9e-254 880.9 1033 57.5
THA.LOC104812525 Tarenaya hassleriana HOM05D003521 ORTHO05D000476 8.9e-254 880.9 1023 58.2
Manes.11G037600 Manihot esculenta HOM05D003521 ORTHO05D000476 2.0e-253 879.8 1027 58.8
Phvul.005G169100 Phaseolus vulgaris HOM05D003521 ORTHO05D000476 4.4e-253 878.6 1022 57.7
Medtr2g101700 Medicago truncatula HOM05D003521 ORTHO05D000476 9.8e-253 877.5 1024 57.7
Dinv38015 Davidia involucrata HOM05D003521 ORTHO05D000476 1.7e-252 876.7 737 71.6
Nitab4.5_0010600g0010 Nicotiana tabacum HOM05D003521 ORTHO05D000476 4.9e-252 875.2 1055 55.9
TWI12G1038 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 9.2e-251 870.9 1025 57.9
Gohir.A10G081600 Gossypium hirsutum HOM05D003521 ORTHO05D000476 3.0e-249 865.9 1032 57.8
Nn2g11676 Nelumbo nucifera HOM05D003521 ORTHO05D000476 1.5e-248 863.6 1057 56.4
Rhsim08G0223900 Rhododendron simsii HOM05D003521 ORTHO05D000476 2.5e-248 862.8 1035 55.7
Actinidia21685 Actinidia chinensis HOM05D003521 ORTHO05D000476 5.6e-248 861.7 1043 56.2
Glyma.15G016700 Glycine max HOM05D003521 ORTHO05D000476 7.3e-248 861.3 1023 56.5
AUR62011668 Chenopodium quinoa HOM05D003521 ORTHO05D000476 1.6e-247 860.1 1033 56.3
MD17G1190500 Malus domestica HOM05D003521 ORTHO05D000476 1.6e-247 860.1 1029 57.3
Thhalv10018077m.g Eutrema salsugineum HOM05D003521 ORTHO05D000476 1.4e-246 857.1 1013 56.4
Gohir.D05G131500 Gossypium hirsutum HOM05D003521 ORTHO05D000476 1.4e-246 857.1 1023 58.1
Aqoxy7G01582 Aquilegia oxysepala HOM05D003521 ORTHO05D000476 3.1e-246 855.9 1023 57.5
Potri.001G185050 Populus trichocarpa HOM05D003521 ORTHO05D000476 3.1e-246 855.9 1033 56.9
Sc18g0003130 Simmondsia chinensis HOM05D003521 ORTHO05D000476 6.8e-246 854.7 1025 57.0
Nitab4.5_0000351g0100 Nicotiana tabacum HOM05D003521 ORTHO05D000476 1.2e-245 854.0 1035 55.6
CANSAT56G3073 Cannabis sativa HOM05D003521 ORTHO05D000476 1.5e-245 853.6 1027 56.2
Gorai.009G135200 Gossypium raimondii HOM05D003521 ORTHO05D000476 1.5e-245 853.6 1023 58.0
Gohir.D10G069800 Gossypium hirsutum HOM05D003521 ORTHO05D000476 2.0e-245 853.2 1021 57.6
TWI18G0852 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 3.4e-245 852.4 1026 57.0
Nn3g18099 Nelumbo nucifera HOM05D003521 ORTHO05D000476 1.7e-244 850.1 1022 57.3
Psat5g297520 Pisum sativum HOM05D003521 ORTHO05D000476 2.2e-244 849.7 1038 56.3
Gorai.011G074100 Gossypium raimondii HOM05D003521 ORTHO05D000476 2.9e-244 849.4 1024 57.0
AL2G41720 Arabidopsis lyrata HOM05D003521 ORTHO05D000476 1.4e-243 847.0 1015 56.9
Peaxi162Scf00207g01030 Petunia axillaris HOM05D003521 ORTHO05D000476 5.4e-243 845.1 1047 55.3
Gohir.A05G132400 Gossypium hirsutum HOM05D003521 ORTHO05D000476 4.6e-242 842.0 1026 57.6
AT1G79830 Arabidopsis thaliana HOM05D003521 ORTHO05D000476 6.0e-242 841.6 1024 55.2
arahy.Tifrunner.gnm1.ann1.ZR40ID Arachis hypogaea HOM05D003521 ORTHO05D000476 2.3e-241 839.7 1023 55.9
Migut.I00939 Erythranthe guttata HOM05D003521 ORTHO05D000476 3.3e-240 835.9 1034 56.7
CARHR143590 Cardamine hirsuta HOM05D003521 ORTHO05D000476 5.6e-240 835.1 1014 55.4
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 5.6e-240 835.1 1100 53.2
COL.COLO4_30440 Corchorus olitorius HOM05D003521 ORTHO05D000476 1.8e-238 830.1 1021 57.3
vmacro18884 Vaccinium macrocarpon HOM05D003521 ORTHO05D000476 2.4e-238 829.7 1060 54.2
Hund00648 Selenicereus undatus HOM05D003521 ORTHO05D000476 4.0e-238 828.9 1061 55.6
SGA_v2.0_scaffold68G22978 Striga asiatica HOM05D003521 ORTHO05D000476 5.2e-238 828.6 1036 56.7
C06p28740 Brassica napus HOM05D003521 ORTHO05D000476 2.6e-237 826.2 1013 55.9
SGA_v2.0_scaffold4G02009 Striga asiatica HOM05D003521 ORTHO05D000476 3.4e-237 825.9 1049 55.4
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 1.7e-236 823.5 1152 50.5
Carub.0002s2767 Capsella rubella HOM05D003521 ORTHO05D000476 1.7e-236 823.5 1012 55.6
SalBow7G4780 Salvia bowleyana HOM05D003521 ORTHO05D000476 2.2e-236 823.2 1061 54.8
BolC6t38043H Brassica oleracea HOM05D003521 ORTHO05D000476 8.4e-236 821.2 1015 55.5
Sp5g35930 Schrenkiella parvula HOM05D003521 ORTHO05D000476 2.4e-235 819.7 1018 54.4
Glyma.13G356900 Glycine max HOM05D003521 ORTHO05D000476 4.2e-235 818.9 1023 54.9
Cc04_g03000 Coffea canephora HOM05D003521 ORTHO05D000476 5.4e-235 818.5 1034 55.8
Sabra03G0027000 Salix brachista HOM05D003521 ORTHO05D000476 5.4e-235 818.5 1057 54.2
BraA07t30279Z Brassica rapa HOM05D003521 ORTHO05D000476 3.5e-234 815.8 1032 54.6
PGR102G1144 Punica granatum HOM05D003521 ORTHO05D000476 3.9e-233 812.4 1021 55.9
AUR62016491 Chenopodium quinoa HOM05D003521 ORTHO05D000476 7.3e-232 808.1 1033 54.4
EL10Ac9g22035 Beta vulgaris HOM05D003521 ORTHO05D000476 1.3e-231 807.4 993 54.9
A07p26350 Brassica napus HOM05D003521 ORTHO05D000476 1.6e-231 807.0 1011 54.6
Aa31LG4G110 Aethionema arabicum HOM05D003521 ORTHO05D000476 1.8e-230 803.5 1043 53.6
Migut.D01015 Erythranthe guttata HOM05D003521 ORTHO05D000476 3.1e-230 802.7 1029 54.0
Sabra01G0155200 Salix brachista HOM05D003521 ORTHO05D000476 2.0e-229 800.0 1051 53.5
Sopen06g024880 Solanum pennellii HOM05D003521 ORTHO05D000476 8.4e-228 794.7 1038 54.1
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 1.4e-227 793.9 1163 49.7
Lalb_Chr04g0262811 Lupinus albus HOM05D003521 ORTHO05D000476 1.9e-227 793.5 1026 53.0
MSTRG.22661 Avicennia marina HOM05D003521 ORTHO05D000476 9.3e-227 791.2 1024 56.0
Lsat_1_v5_gn_1_35300 Lactuca sativa HOM05D003521 ORTHO05D000476 1.3e-225 787.3 1026 55.3
HanXRQChr04g0096181 Helianthus annuus HOM05D003521 ORTHO05D000476 2.3e-225 786.6 1028 54.1
PSO386G0042 Papaver somniferum HOM05D003521 ORTHO05D000476 6.7e-225 785.0 1047 53.4
HanXRQChr10g0313461 Helianthus annuus HOM05D003521 ORTHO05D000476 5.6e-224 781.9 1024 53.7
CAN.G1152.8 Capsicum annuum HOM05D003521 ORTHO05D000476 7.4e-224 781.6 1043 53.5
Hund06634 Selenicereus undatus HOM05D003521 ORTHO05D000476 6.2e-223 778.5 1057 52.7
ECA247G0039 Erigeron canadensis HOM05D003521 ORTHO05D000476 1.5e-221 773.9 1053 51.4
Solyc06g066610.4 Solanum lycopersicum HOM05D003521 ORTHO05D000476 2.6e-221 773.1 1035 53.6
ECA234G0658 Erigeron canadensis HOM05D003521 ORTHO05D000476 1.7e-220 770.4 1020 53.2
DCAR_016209 Daucus carota HOM05D003521 ORTHO05D000476 1.0e-217 761.1 1020 54.3
PSO210G6795 Papaver somniferum HOM05D003521 ORTHO05D000476 1.5e-216 757.3 1048 52.3
Actinidia24741 Actinidia chinensis HOM05D003521 ORTHO05D000476 2.1e-215 753.4 998 54.3
CDE02G1875 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 8.4e-212 741.5 1024 52.5
unitig_62.g23765 Utricularia gibba HOM05D003521 ORTHO05D000476 2.3e-209 733.4 1016 52.4
arahy.Tifrunner.gnm1.ann1.M6JGC2 Arachis hypogaea HOM05D003521 ORTHO05D000476 6.7e-209 731.9 1023 51.9
HanXRQChr12g0360801 Helianthus annuus HOM05D003521 ORTHO05D000476 1.5e-205 720.7 1024 50.3
Lsat_1_v5_gn_5_130960 Lactuca sativa HOM05D003521 ORTHO05D000476 3.2e-203 713.0 1027 50.5
ATR0315G089 Amborella trichopoda HOM05D003521 ORTHO05D000476 1.6e-199 700.7 1021 51.1
Zm00001eb295600 Zea mays HOM05D003521 ORTHO05D000476 1.0e-193 681.4 1047 46.9
SHI10997 Sapria himalayana HOM05D003521 ORTHO05D000476 7.4e-192 675.2 1113 45.1
Os05g0559900 Oryza sativa ssp. japonica HOM05D003521 ORTHO05D000476 1.0e-185 654.8 1061 46.6
Lj5C57T13 Lonicera japonica HOM05D003521 ORTHO05D000476 1.4e-182 644.4 1054 47.5
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 1.4e-174 617.8 1025 46.0
Cpa.g.sc1513.1 Carica papaya HOM05D003521 ORTHO05D000476 3.8e-172 609.8 481 77.3
Mapoly0013s0180 Marchantia polymorpha HOM05D003521 ORTHO05D000476 1.5e-160 571.2 1032 43.5
Pp3c12_5050 Physcomitrium patens HOM05D003521 ORTHO05D000476 1.5e-155 554.7 1032 43.8
HanXRQChr16g0500841 Helianthus annuus HOM05D003521 ORTHO05D000476 6.2e-146 522.7 929 44.2
HPP92_003835 Vanilla planifolia HOM05D003521 ORTHO05D000476 1.5e-139 501.5 549 60.8
CDE08G0748 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 1.6e-138 498.0 808 48.8
AagrBONN_evm.TU.Sc2ySwM_344.1927 Anthoceros agrestis HOM05D003521 ORTHO05D000476 8.9e-137 492.3 732 50.3
Pp3c4_15860 Physcomitrium patens HOM05D003521 ORTHO05D000476 3.0e-124 450.7 910 41.5
CBR_g16051 Chara braunii HOM05D003521 ORTHO05D000476 6.2e-98 363.2 1022 34.7
Zm00001eb343520 Zea mays HOM05D003521 ORTHO05D000476 2.0e-96 358.2 391 58.3
unitig_46.g18558 Utricularia gibba HOM05D003521 ORTHO05D000476 6.5e-63 246.9 409 46.7
Oeu024073.1 Olea europaea HOM05D003521 ORTHO05D000476 2.5e-62 245.0 551 40.1
CAN.G395.28 Capsicum annuum HOM05D003521 ORTHO05D000476 7.7e-56 223.4 345 49.9
CDE08G0544 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 1.8e-49 202.2 207 59.9
Lsat_1_v5_gn_4_102620 Lactuca sativa HOM05D003521 ORTHO05D000476 8.6e-47 193.4 164 70.1
Ca_01143_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.1e-46 193.0 290 51.7
TPR.G5155 Trifolium pratense HOM05D003521 ORTHO05D000476 2.5e-38 165.2 122 82.0
MELO3C034685.2 Cucumis melo HOM05D003521 ORTHO05D000476 7.5e-35 153.7 88 94.3
Cre03.g187000 Chlamydomonas reinhardtii HOM05D003521 ORTHO05D000476 2.7e-32 145.2 322 37.3
Lsat_1_v5_gn_4_178240 Lactuca sativa HOM05D003521 ORTHO05D000476 3.5e-32 144.8 120 72.5
Cpa.g.c29821 Carica papaya HOM05D003521 ORTHO05D000476 1.9e-30 139.0 118 68.6
CAN.G135.35 Capsicum annuum HOM05D003521 ORTHO05D000476 3.3e-30 138.3 101 77.2
Cpa.g.c33209.1 Carica papaya HOM05D003521 ORTHO05D000476 2.1e-29 135.6 429 36.4
PRCOL_00000677 Prasinoderma coloniale HOM05D003521 ORTHO05D000476 2.8e-29 135.2 652 28.1
Zm00001eb343530 Zea mays HOM05D003521 ORTHO05D000476 8.0e-29 133.7 513 32.6
SEGI_27505 Sequoiadendron giganteum HOM05D003521 ORTHO05D000476 5.2e-28 131.0 487 30.4
HanXRQChr16g0500831 Helianthus annuus HOM05D003521 ORTHO05D000476 3.7e-26 124.8 87 78.2
Actinidia32725 Actinidia chinensis HOM05D003521 ORTHO05D000476 1.2e-24 119.8 102 66.7
SMO298G0028 Selaginella moellendorffii HOM05D003521 ORTHO05D000476 2.1e-24 119.0 348 34.2
Lsat_1_v5_gn_4_102580 Lactuca sativa HOM05D003521 ORTHO05D000476 1.0e-23 116.7 474 30.6
arahy.Tifrunner.gnm1.ann1.J2PPD0 Arachis hypogaea HOM05D003521 ORTHO05D000476 1.3e-23 116.3 99 70.7
Mapoly0111s0038 Marchantia polymorpha HOM05D003521 ORTHO05D000476 1.1e-22 113.2 642 25.5
Ca_25389_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.9e-22 112.5 242 38.8
Medtr2g043010 Medicago truncatula HOM05D003521 ORTHO05D000476 7.3e-22 110.5 158 52.5
Oeu024072.1 Olea europaea HOM05D003521 ORTHO05D000476 9.5e-22 110.2 421 31.8
Dinv38016 Davidia involucrata HOM05D003521 ORTHO05D000476 1.2e-21 109.8 134 52.2
CARHR143550 Cardamine hirsuta HOM05D003521 ORTHO05D000476 1.4e-20 106.3 249 36.9
arahy.Tifrunner.gnm1.ann1.SA7FDN Arachis hypogaea HOM05D003521 ORTHO05D000476 2.0e-19 102.4 63 87.3
Ca_25015_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 2.2e-18 99.0 90 66.7
unitig_52.g17085 Utricularia gibba HOM05D003521 ORTHO05D000476 3.7e-18 98.2 200 41.5
MCO14G500 Micromonas commoda HOM05D003521 ORTHO05D000476 2.4e-17 95.5 579 27.5
Ca_16259_v3 Cicer arietinum L. HOM05D001034 ORTHO05D000476 3.2e-17 95.1 80 66.2
AagrBONN_evm.TU.Sc2ySwM_344.1934 Anthoceros agrestis HOM05D003521 ORTHO05D000476 5.4e-17 94.4 333 30.0
CBR_g37651 Chara braunii HOM05D003521 ORTHO05D000476 9.2e-17 93.6 673 23.8
Lsat_1_v5_gn_4_102600 Lactuca sativa HOM05D003521 ORTHO05D000476 2.3e-15 89.0 74 70.3
BolC1t05061H Brassica oleracea HOM05D003521 ORTHO05D000476 8.6e-15 87.0 88 64.8
CARHR212390 Cardamine hirsuta HOM05D003521 ORTHO05D000476 8.6e-15 87.0 97 58.8
Thecc.08G046800 Theobroma cacao HOM05D003521 ORTHO05D000476 1.1e-14 86.7 71 74.6
Lsat_1_v5_gn_2_62580 Lactuca sativa HOM05D003521 ORTHO05D000476 1.9e-14 85.9 60 80.0
C09p10740 Brassica napus HOM05D003521 ORTHO05D000476 8.9e-12 77.0 88 60.2
Ca_25011_v3 Cicer arietinum L. HOM05D010632 ORTHO05D000013 2.4e-09 68.9 55 72.7
Ca_31247_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 4.2e-09 68.2 91 50.5
MELO3C027912.2 Cucumis melo HOM05D000030 ORTHO05D000031 4.2e-09 68.2 40 82.5
TPR.G19044 Trifolium pratense HOM05D003521 ORTHO05D000476 2.7e-08 65.5 59 71.2
HanXRQChr11g0325911 Helianthus annuus HOM05D003521 ORTHO05D000476 6.0e-08 64.3 69 59.4
AagrBONN_evm.TU.Sc2ySwM_344.1936 Anthoceros agrestis HOM05D003521 ORTHO05D000476 7.8e-08 63.9 154 36.4
MBI19_g34543_MAGBIO Magnolia biondii HOM05D003521 ORTHO05D000476 7.8e-08 63.9 47 74.5
HanXRQChr07g0187491 Helianthus annuus HOM05D003521 ORTHO05D000476 1.3e-07 63.2 79 50.6
TPR.G7293 Trifolium pratense HOM05D003521 ORTHO05D000476 3.0e-07 62.0 94 47.9
HanXRQChr01g0011031 Helianthus annuus HOM05D003521 ORTHO05D000476 3.9e-07 61.6 45 68.9
EL10Ac6g13433 Beta vulgaris HOM05D000200 ORTHO05D000262 5.6e-06 57.8 44 65.9
GSVIVG01038696001 Vitis vinifera HOM05D000906 ORTHO05D000713 5.6e-06 57.8 35 85.7


User provided reference genes

Program Settings