Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 0.0e+00 1394.0 730 100.0
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 0.0e+00 1299.6 801 86.4
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 0.0e+00 1157.1 809 77.0
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 6.3e-265 917.5 801 62.5
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 2.0e-258 896.0 801 61.3
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 1.1e-256 890.2 811 61.2
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 7.0e-256 887.5 809 62.2
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 1.0e-254 883.6 801 60.8
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 3.1e-248 862.1 811 60.0
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 4.5e-247 858.2 813 60.8
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 4.5e-247 858.2 803 59.3
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 5.9e-247 857.8 829 59.2
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 1.7e-246 856.3 801 59.2
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 3.3e-245 852.0 803 57.8
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.0e-243 847.0 805 60.1
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 2.3e-243 845.9 822 58.6
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.0e-243 845.1 807 58.9
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 2.6e-242 842.4 821 59.1
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.6e-242 842.4 805 58.6
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 4.4e-242 841.6 818 57.6
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 5.7e-242 841.3 805 58.5
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 5.4e-240 834.7 807 59.9
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 5.4e-240 834.7 801 58.4
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.2e-239 833.6 801 58.4
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 1.6e-239 833.2 806 57.2
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 5.9e-239 831.2 819 57.0
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 3.0e-238 828.9 808 58.0
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 1.9e-237 826.2 807 58.2
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 3.3e-237 825.5 819 59.1
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 1.6e-236 823.2 848 56.4
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 2.8e-236 822.4 808 56.7
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 1.1e-235 820.5 809 57.2
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.7e-233 813.1 801 57.3
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 2.2e-233 812.8 787 59.8
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 1.1e-232 810.4 806 57.6
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 1.2e-231 807.0 809 58.8
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 6.6e-230 801.2 809 58.5
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 1.5e-229 800.0 811 57.1
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 4.3e-229 798.5 801 56.7
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 1.9e-224 783.1 806 56.0
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 3.2e-224 782.3 809 56.2
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 5.4e-224 781.6 842 54.6
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 1.3e-222 776.9 445 95.7
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 3.0e-222 775.8 723 59.6
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 3.9e-222 775.4 828 54.5
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 2.8e-220 769.2 821 55.8
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 6.8e-219 764.6 716 60.6
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 8.9e-219 764.2 806 54.5
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 2.9e-217 759.2 807 56.5
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 3.3e-213 745.7 807 56.8
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 5.6e-213 745.0 815 52.8
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 1.8e-211 740.0 815 52.5
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 7.6e-210 734.6 862 49.9
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 3.2e-208 729.2 819 52.4
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 1.1e-205 720.7 829 52.6
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 5.6e-205 718.4 835 50.2
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 7.3e-205 718.0 843 50.7
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 2.4e-200 703.0 866 50.1
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.2e-199 700.7 810 52.5
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 4.6e-199 698.7 820 54.3
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 2.6e-194 682.9 854 49.8
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 3.5e-191 672.5 809 51.2
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 3.5e-191 672.5 831 49.0
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 6.0e-191 671.8 810 52.6
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.8e-190 670.2 779 52.8
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 1.6e-188 663.7 825 49.8
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 4.0e-187 659.1 806 51.4
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 9.0e-187 657.9 814 53.6
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 4.5e-186 655.6 914 46.8
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 1.0e-185 654.4 813 50.1
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 9.3e-184 647.9 913 47.0
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 3.0e-182 642.9 911 46.2
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.0e-182 642.9 628 58.4
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 2.4e-179 633.3 687 56.9
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 3.1e-179 632.9 922 45.6
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 5.3e-179 632.1 768 50.3
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 5.9e-178 628.6 973 43.9
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 2.2e-177 626.7 773 51.4
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 3.2e-176 622.9 922 45.6
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.8e-174 617.1 816 48.8
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.3e-172 610.9 829 46.1
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 8.2e-172 608.2 807 47.5
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 2.6e-170 603.2 900 46.2
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 7.7e-170 601.7 752 52.5
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 1.0e-169 601.3 795 49.8
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 4.2e-168 595.9 822 46.2
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 1.2e-167 594.3 811 48.6
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 2.1e-167 593.6 925 44.3
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 2.1e-167 593.6 907 45.4
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 4.7e-167 592.4 905 45.9
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 2.3e-166 590.1 468 68.2
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 5.1e-166 589.0 916 44.9
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 5.7e-165 585.5 532 60.5
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 4.8e-164 582.4 1013 41.4
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 3.1e-163 579.7 549 58.5
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 2.9e-161 573.2 810 45.8
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 2.5e-160 570.1 806 45.9
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 2.1e-159 567.0 794 46.0
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.1e-157 561.2 807 45.1
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 2.0e-157 560.5 813 45.1
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 5.5e-152 542.3 845 45.2
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 5.2e-150 535.8 905 44.0
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 2.0e-149 533.9 807 45.8
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 1.8e-147 527.3 905 43.5
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 2.4e-147 526.9 797 44.4
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 1.2e-143 514.6 638 49.2
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 1.3e-140 504.6 609 52.7
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 2.8e-140 503.4 803 44.0
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 1.1e-139 501.5 809 45.0
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 1.2e-130 471.5 407 62.4
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 2.0e-125 454.1 785 41.5
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 4.9e-124 449.5 448 57.4
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.1e-123 448.4 638 46.1
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 4.6e-122 443.0 347 65.7
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 3.9e-121 439.9 1086 34.8
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.9e-120 437.6 334 67.7
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 1.2e-119 434.9 353 65.2
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 3.5e-114 416.8 339 65.8
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 4.1e-107 393.3 393 55.0
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 9.5e-104 382.1 351 58.4
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 5.2e-102 376.3 440 50.7
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 5.8e-101 372.9 373 56.3
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 2.1e-98 364.4 335 58.5
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.0e-97 362.1 474 45.4
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 6.6e-97 359.4 468 45.7
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 3.6e-95 353.6 357 59.1
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 3.1e-94 350.5 460 47.4
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.0e-93 347.8 241 75.9
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 9.9e-93 345.5 375 52.3
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 1.4e-91 341.7 455 48.1
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 4.2e-91 340.1 345 53.3
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 9.3e-91 339.0 405 51.4
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 3.9e-89 333.6 598 40.1
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.1e-88 332.0 473 50.3
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 9.6e-88 328.9 407 47.2
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 2.9e-84 317.4 367 50.4
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 1.6e-82 311.6 314 56.1
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 4.6e-82 310.1 291 58.1
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 5.6e-80 303.1 592 43.2
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 7.4e-80 302.8 351 50.1
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.0e-76 292.4 422 42.2
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 5.1e-73 280.0 270 57.8
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.5e-72 278.5 664 33.7
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 4.8e-71 273.5 447 40.3
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.1e-70 272.3 255 58.0
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 1.1e-70 272.3 416 44.0
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.8e-70 271.6 433 39.7
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.3e-68 265.4 423 39.2
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 6.1e-66 256.5 468 43.8
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 4.8e-63 246.9 490 38.2
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 1.4e-62 245.4 429 37.1
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 2.6e-61 241.1 450 41.1
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 8.5e-60 236.1 426 39.4
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 9.4e-51 206.1 184 60.9
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 3.7e-47 194.1 180 56.7
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 4.4e-40 170.6 313 35.1
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 3.7e-39 167.5 189 48.1
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.7e-36 158.7 101 81.2
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.9e-35 155.2 110 70.0
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 9.4e-35 152.9 281 35.2
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 5.2e-33 147.1 219 42.9
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 5.7e-32 143.7 433 29.6
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 4.8e-31 140.6 109 59.6
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 2.9e-28 131.3 110 57.3
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 4.2e-27 127.5 441 29.0
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 9.4e-27 126.3 85 72.9
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 1.6e-26 125.6 190 43.7
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 4.7e-26 124.0 292 30.8
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 9.8e-24 116.3 203 40.4
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 6.6e-20 103.6 116 55.2
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 1.1e-19 102.8 65 76.9
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.4e-17 95.9 63 73.0
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.8e-14 85.5 43 90.7
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 5.9e-13 80.5 50 80.0
Ca_09910_v3 Cicer arietinum L. HOM05D003095 ORTHO05D003517 4.3e-11 74.3 79 55.7
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 6.1e-10 70.5 64 60.9
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 7.5e-08 63.5 46 67.4
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 7.5e-08 63.5 32 84.4
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 3.7e-07 61.2 46 67.4
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.9e-07 60.8 56 58.9


User provided reference genes

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